Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/3031ce369eb4b7b6408e85a1de9326/659_Dd-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/9c94c49ed5f9d472c233dc3e04b3b8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/9c94c49ed5f9d472c233dc3e04b3b8/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory