Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/a204245ef07bff9da1e1435d816352/659_bGW-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/d08a06cff70759838d5e9a8accd5f4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/d08a06cff70759838d5e9a8accd5f4/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/d290db45e5ac389e334978fe6ad452/659_bGW-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
PTPRK--RSPO3
starfusion
arriba
DLG5--KCNMA1
starfusion
arriba
WDR19--ATP8A1
starfusion
arriba
POLR2E--KEAP1
starfusion
arriba
RFC1--GPRC5A
starfusion
arriba
GPRC5A--RFC1
starfusion
arriba
DIP2B--PTRHD1
starfusion
arriba
NDUFA9--C12orf4
starfusion
BORCS5--LIMA1
starfusion
SULT1B1--TBC1D1
arriba
SULT1B1--AC098680.2
arriba
PKP2--PKP2
arriba
PKP2--ASS1P14
arriba
PCDHGA5--PCDHGA8
arriba
PCDHGA5--PCDHGB6
arriba
TYK2--SBNO2
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGA5--PCDHGC4
arriba
PCDHGA5--PCDHGB7
arriba
PCDHGA5--PCDHGA12
arriba
PCDHGA5--PCDHGC3
arriba
JMJD1C--LINC00841
arriba
JMJD1C--AL137026.2
arriba
MRPS6--RUNX1
arriba
SLC5A3--RUNX1
arriba
GTF2A1L--STON1-GTF2A1L
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHA13
arriba
ANKRD24--KEAP1
arriba
CRYZL2P--SEC16B
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba

  0%|          | 0/37 [00:00<?, ?it/s]
Processing PTPRK--RSPO3:   0%|          | 0/37 [00:00<?, ?it/s]
Processing PTPRK--RSPO3:   3%|▎         | 1/37 [00:00<00:03,  9.25it/s]
Processing DLG5--KCNMA1:   3%|▎         | 1/37 [00:00<00:03,  9.25it/s]
Processing DLG5--KCNMA1:   5%|▌         | 2/37 [00:00<00:03,  9.48it/s]
Processing WDR19--ATP8A1:   5%|▌         | 2/37 [00:00<00:03,  9.48it/s]
Processing WDR19--ATP8A1:   8%|▊         | 3/37 [00:00<00:03,  9.56it/s]
Processing POLR2E--KEAP1:   8%|▊         | 3/37 [00:00<00:03,  9.56it/s]
Processing POLR2E--KEAP1:  11%|█         | 4/37 [00:00<00:03,  9.59it/s]
Processing RFC1--GPRC5A:  11%|█         | 4/37 [00:00<00:03,  9.59it/s] 
Processing RFC1--GPRC5A:  14%|█▎        | 5/37 [00:00<00:03,  9.61it/s]
Processing GPRC5A--RFC1:  14%|█▎        | 5/37 [00:00<00:03,  9.61it/s]
Processing GPRC5A--RFC1:  16%|█▌        | 6/37 [00:00<00:03,  9.62it/s]
Processing DIP2B--PTRHD1:  16%|█▌        | 6/37 [00:00<00:03,  9.62it/s]
Processing DIP2B--PTRHD1:  19%|█▉        | 7/37 [00:00<00:03,  9.63it/s]
Processing NDUFA9--C12orf4:  19%|█▉        | 7/37 [00:00<00:03,  9.63it/s]
Processing NDUFA9--C12orf4:  22%|██▏       | 8/37 [00:00<00:03,  9.63it/s]
Processing BORCS5--LIMA1:  22%|██▏       | 8/37 [00:00<00:03,  9.63it/s]  
Processing BORCS5--LIMA1:  24%|██▍       | 9/37 [00:00<00:02,  9.63it/s]
Processing SULT1B1--TBC1D1:  24%|██▍       | 9/37 [00:00<00:02,  9.63it/s]
Processing SULT1B1--TBC1D1:  27%|██▋       | 10/37 [00:01<00:02,  9.64it/s]
Processing SULT1B1--AC098680.2:  27%|██▋       | 10/37 [00:01<00:02,  9.64it/s]
Processing SULT1B1--AC098680.2:  30%|██▉       | 11/37 [00:01<00:02,  9.64it/s]
Processing PKP2--PKP2:  30%|██▉       | 11/37 [00:01<00:02,  9.64it/s]         
Processing PKP2--PKP2:  32%|███▏      | 12/37 [00:01<00:02,  9.64it/s]
Processing PKP2--ASS1P14:  32%|███▏      | 12/37 [00:01<00:02,  9.64it/s]
Processing PKP2--ASS1P14:  35%|███▌      | 13/37 [00:01<00:02,  9.64it/s]
Processing PCDHGA5--PCDHGA8:  35%|███▌      | 13/37 [00:01<00:02,  9.64it/s]
Processing PCDHGA5--PCDHGA8:  38%|███▊      | 14/37 [00:01<00:02,  9.63it/s]
Processing PCDHGA5--PCDHGB6:  38%|███▊      | 14/37 [00:01<00:02,  9.63it/s]
Processing PCDHGA5--PCDHGB6:  41%|████      | 15/37 [00:01<00:02,  9.63it/s]
Processing TYK2--SBNO2:  41%|████      | 15/37 [00:01<00:02,  9.63it/s]     
Processing TYK2--SBNO2:  43%|████▎     | 16/37 [00:01<00:02,  9.63it/s]
Processing PCDHGA5--PCDHGC5:  43%|████▎     | 16/37 [00:01<00:02,  9.63it/s]
Processing PCDHGA5--PCDHGC5:  46%|████▌     | 17/37 [00:01<00:02,  9.63it/s]
Processing PCDHGA5--PCDHGA9:  46%|████▌     | 17/37 [00:01<00:02,  9.63it/s]
Processing PCDHGA5--PCDHGA9:  49%|████▊     | 18/37 [00:01<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGA11:  49%|████▊     | 18/37 [00:01<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGA11:  51%|█████▏    | 19/37 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA10:  51%|█████▏    | 19/37 [00:01<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA10:  54%|█████▍    | 20/37 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGC4:  54%|█████▍    | 20/37 [00:02<00:01,  9.64it/s] 
Processing PCDHGA5--PCDHGC4:  57%|█████▋    | 21/37 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGB7:  57%|█████▋    | 21/37 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGB7:  59%|█████▉    | 22/37 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGA12:  59%|█████▉    | 22/37 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGA12:  62%|██████▏   | 23/37 [00:02<00:01,  9.64it/s]
Processing PCDHGA5--PCDHGC3:  62%|██████▏   | 23/37 [00:02<00:01,  9.64it/s] 
Processing PCDHGA5--PCDHGC3:  65%|██████▍   | 24/37 [00:02<00:01,  9.64it/s]
Processing JMJD1C--LINC00841:  65%|██████▍   | 24/37 [00:02<00:01,  9.64it/s]
Processing JMJD1C--LINC00841:  68%|██████▊   | 25/37 [00:02<00:01,  9.64it/s]
Processing JMJD1C--AL137026.2:  68%|██████▊   | 25/37 [00:02<00:01,  9.64it/s]
Processing JMJD1C--AL137026.2:  70%|███████   | 26/37 [00:02<00:01,  9.65it/s]
Processing MRPS6--RUNX1:  70%|███████   | 26/37 [00:02<00:01,  9.65it/s]      
Processing MRPS6--RUNX1:  73%|███████▎  | 27/37 [00:02<00:01,  9.65it/s]
Processing SLC5A3--RUNX1:  73%|███████▎  | 27/37 [00:02<00:01,  9.65it/s]
Processing SLC5A3--RUNX1:  76%|███████▌  | 28/37 [00:02<00:00,  9.65it/s]
Processing GTF2A1L--STON1-GTF2A1L:  76%|███████▌  | 28/37 [00:02<00:00,  9.65it/s]
Processing GTF2A1L--STON1-GTF2A1L:  78%|███████▊  | 29/37 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC1:  78%|███████▊  | 29/37 [00:03<00:00,  9.65it/s]      
Processing PCDHA10--PCDHAC1:  81%|████████  | 30/37 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  81%|████████  | 30/37 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHAC2:  84%|████████▍ | 31/37 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  84%|████████▍ | 31/37 [00:03<00:00,  9.65it/s]
Processing PCDHA10--PCDHA13:  86%|████████▋ | 32/37 [00:03<00:00,  9.65it/s]
Processing ANKRD24--KEAP1:  86%|████████▋ | 32/37 [00:03<00:00,  9.65it/s]  
Processing ANKRD24--KEAP1:  89%|████████▉ | 33/37 [00:03<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B:  89%|████████▉ | 33/37 [00:03<00:00,  9.65it/s]
Processing CRYZL2P--SEC16B:  92%|█████████▏| 34/37 [00:03<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC1:  92%|█████████▏| 34/37 [00:03<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC1:  95%|█████████▍| 35/37 [00:03<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  95%|█████████▍| 35/37 [00:03<00:00,  9.65it/s]
Processing PCDHA4--PCDHAC2:  97%|█████████▋| 36/37 [00:03<00:00,  9.65it/s]
Processing PCDHA4--PCDHA13:  97%|█████████▋| 36/37 [00:03<00:00,  9.65it/s]
Processing PCDHA4--PCDHA13: 100%|██████████| 37/37 [00:03<00:00,  9.65it/s]
Processing PCDHA4--PCDHA13: 100%|██████████| 37/37 [00:03<00:00,  9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory