File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/3776eee1b3f02799bb7b63ed44f0c0/.command.log
Size
11.2 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bNS-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/7f90f4395412b2f2d06947aa90ea3d/659_bNS-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/3776eee1b3f02799bb7b63ed44f0c0/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/3776eee1b3f02799bb7b63ed44f0c0/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5d/9d1211467e4eadbd5475aa7ec3dec9/659_bNS-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
EML4--ALK
starfusion
arriba
SNTB2--TANGO6
starfusion
arriba
FBXO25--AL669831.1
starfusion
AC091132.4--AC103810.6
starfusion
TMEM120B--ORAI1
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGC3
arriba
IGFL1P2--HIF3A
arriba
TVP23C--CDRT4
arriba
PCDHGA6--PCDHGA8
arriba
PCDHGA6--PCDHGA10
arriba
PCDHGA6--PCDHGC5
arriba
PCDHGA6--PCDHGB6
arriba
PCDHGA6--PCDHGC4
arriba
PCDHGA6--PCDHGB7
arriba
PCDHGA6--PCDHGA11
arriba
PCDHGA6--PCDHGA12
arriba
PCDHGA6--PCDHGA9
arriba
PCDHGA6--PCDHGC3
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHA13
arriba
PCDHA6--PCDHAC1
arriba
PCDHGA5--PCDHGA8
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGC4
arriba
PCDHGA5--PCDHGB7
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA5--PCDHGA12
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGA5--PCDHGC3
arriba
PCDHGA2--PCDHGA8
arriba
PCDHGA2--PCDHGA10
arriba
PCDHGA2--PCDHGC5
arriba
PCDHGA2--PCDHGB6
arriba
PCDHGA2--PCDHGC4
arriba
PCDHGA2--PCDHGB7
arriba
PCDHGA2--PCDHGA11
arriba
PCDHGA2--PCDHGA12
arriba
PCDHGA2--PCDHGA9
arriba
PCDHGA2--PCDHGC3
arriba
AC092807.3--DDAH1
arriba
KLRC4--KLRK1
arriba

  0%|          | 0/52 [00:00<?, ?it/s]
Processing EML4--ALK:   0%|          | 0/52 [00:00<?, ?it/s]
Processing EML4--ALK:   2%|▏         | 1/52 [00:00<00:05,  9.22it/s]
Processing SNTB2--TANGO6:   2%|▏         | 1/52 [00:00<00:05,  9.22it/s]
Processing SNTB2--TANGO6:   4%|▍         | 2/52 [00:00<00:05,  9.45it/s]
Processing FBXO25--AL669831.1:   4%|▍         | 2/52 [00:00<00:05,  9.45it/s]
Processing FBXO25--AL669831.1:   6%|▌         | 3/52 [00:00<00:05,  9.53it/s]
Processing AC091132.4--AC103810.6:   6%|▌         | 3/52 [00:00<00:05,  9.53it/s]
Processing AC091132.4--AC103810.6:   8%|▊         | 4/52 [00:00<00:05,  9.57it/s]
Processing TMEM120B--ORAI1:   8%|▊         | 4/52 [00:00<00:05,  9.57it/s]       
Processing TMEM120B--ORAI1:  10%|▉         | 5/52 [00:00<00:04,  9.59it/s]
Processing PCDHGB2--PCDHGA8:  10%|▉         | 5/52 [00:00<00:04,  9.59it/s]
Processing PCDHGB2--PCDHGA8:  12%|█▏        | 6/52 [00:00<00:04,  9.61it/s]
Processing PCDHGB2--PCDHGA10:  12%|█▏        | 6/52 [00:00<00:04,  9.61it/s]
Processing PCDHGB2--PCDHGA10:  13%|█▎        | 7/52 [00:00<00:04,  9.61it/s]
Processing PCDHGB2--PCDHGC5:  13%|█▎        | 7/52 [00:00<00:04,  9.61it/s] 
Processing PCDHGB2--PCDHGC5:  15%|█▌        | 8/52 [00:00<00:04,  9.62it/s]
Processing PCDHGB2--PCDHGB6:  15%|█▌        | 8/52 [00:00<00:04,  9.62it/s]
Processing PCDHGB2--PCDHGB6:  17%|█▋        | 9/52 [00:00<00:04,  9.62it/s]
Processing PCDHGB2--PCDHGC4:  17%|█▋        | 9/52 [00:00<00:04,  9.62it/s]
Processing PCDHGB2--PCDHGC4:  19%|█▉        | 10/52 [00:01<00:04,  9.62it/s]
Processing PCDHGB2--PCDHGB7:  19%|█▉        | 10/52 [00:01<00:04,  9.62it/s]
Processing PCDHGB2--PCDHGB7:  21%|██        | 11/52 [00:01<00:04,  9.62it/s]
Processing PCDHGB2--PCDHGA11:  21%|██        | 11/52 [00:01<00:04,  9.62it/s]
Processing PCDHGB2--PCDHGA11:  23%|██▎       | 12/52 [00:01<00:04,  9.62it/s]
Processing PCDHGB2--PCDHGA12:  23%|██▎       | 12/52 [00:01<00:04,  9.62it/s]
Processing PCDHGB2--PCDHGA12:  25%|██▌       | 13/52 [00:01<00:04,  9.63it/s]
Processing PCDHGB2--PCDHGA9:  25%|██▌       | 13/52 [00:01<00:04,  9.63it/s] 
Processing PCDHGB2--PCDHGA9:  27%|██▋       | 14/52 [00:01<00:03,  9.63it/s]
Processing PCDHGB2--PCDHGC3:  27%|██▋       | 14/52 [00:01<00:03,  9.63it/s]
Processing PCDHGB2--PCDHGC3:  29%|██▉       | 15/52 [00:01<00:03,  9.63it/s]
Processing IGFL1P2--HIF3A:  29%|██▉       | 15/52 [00:01<00:03,  9.63it/s]  
Processing IGFL1P2--HIF3A:  31%|███       | 16/52 [00:01<00:03,  9.63it/s]
Processing TVP23C--CDRT4:  31%|███       | 16/52 [00:01<00:03,  9.63it/s] 
Processing TVP23C--CDRT4:  33%|███▎      | 17/52 [00:01<00:03,  9.63it/s]
Processing PCDHGA6--PCDHGA8:  33%|███▎      | 17/52 [00:01<00:03,  9.63it/s]
Processing PCDHGA6--PCDHGA8:  35%|███▍      | 18/52 [00:01<00:03,  9.63it/s]
Processing PCDHGA6--PCDHGA10:  35%|███▍      | 18/52 [00:01<00:03,  9.63it/s]
Processing PCDHGA6--PCDHGA10:  37%|███▋      | 19/52 [00:01<00:03,  9.63it/s]
Processing PCDHGA6--PCDHGC5:  37%|███▋      | 19/52 [00:01<00:03,  9.63it/s] 
Processing PCDHGA6--PCDHGC5:  38%|███▊      | 20/52 [00:02<00:03,  9.63it/s]
Processing PCDHGA6--PCDHGB6:  38%|███▊      | 20/52 [00:02<00:03,  9.63it/s]
Processing PCDHGA6--PCDHGB6:  40%|████      | 21/52 [00:02<00:03,  9.63it/s]
Processing PCDHGA6--PCDHGC4:  40%|████      | 21/52 [00:02<00:03,  9.63it/s]
Processing PCDHGA6--PCDHGC4:  42%|████▏     | 22/52 [00:02<00:03,  9.63it/s]
Processing PCDHGA6--PCDHGB7:  42%|████▏     | 22/52 [00:02<00:03,  9.63it/s]
Processing PCDHGA6--PCDHGB7:  44%|████▍     | 23/52 [00:02<00:03,  9.63it/s]
Processing PCDHGA6--PCDHGA11:  44%|████▍     | 23/52 [00:02<00:03,  9.63it/s]
Processing PCDHGA6--PCDHGA11:  46%|████▌     | 24/52 [00:02<00:02,  9.63it/s]
Processing PCDHGA6--PCDHGA12:  46%|████▌     | 24/52 [00:02<00:02,  9.63it/s]
Processing PCDHGA6--PCDHGA12:  48%|████▊     | 25/52 [00:02<00:02,  9.62it/s]
Processing PCDHGA6--PCDHGA9:  48%|████▊     | 25/52 [00:02<00:02,  9.62it/s] 
Processing PCDHGA6--PCDHGA9:  50%|█████     | 26/52 [00:02<00:02,  9.63it/s]
Processing PCDHGA6--PCDHGC3:  50%|█████     | 26/52 [00:02<00:02,  9.63it/s]
Processing PCDHGA6--PCDHGC3:  52%|█████▏    | 27/52 [00:02<00:02,  9.62it/s]
Processing PCDHA6--PCDHAC2:  52%|█████▏    | 27/52 [00:02<00:02,  9.62it/s] 
Processing PCDHA6--PCDHAC2:  54%|█████▍    | 28/52 [00:02<00:02,  9.63it/s]
Processing PCDHA6--PCDHA13:  54%|█████▍    | 28/52 [00:02<00:02,  9.63it/s]
Processing PCDHA6--PCDHA13:  56%|█████▌    | 29/52 [00:03<00:02,  9.63it/s]
Processing PCDHA6--PCDHAC1:  56%|█████▌    | 29/52 [00:03<00:02,  9.63it/s]
Processing PCDHA6--PCDHAC1:  58%|█████▊    | 30/52 [00:03<00:02,  9.62it/s]
Processing PCDHGA5--PCDHGA8:  58%|█████▊    | 30/52 [00:03<00:02,  9.62it/s]
Processing PCDHGA5--PCDHGA8:  60%|█████▉    | 31/52 [00:03<00:02,  9.63it/s]
Processing PCDHGA5--PCDHGA10:  60%|█████▉    | 31/52 [00:03<00:02,  9.63it/s]
Processing PCDHGA5--PCDHGA10:  62%|██████▏   | 32/52 [00:03<00:02,  9.63it/s]
Processing PCDHGA5--PCDHGC5:  62%|██████▏   | 32/52 [00:03<00:02,  9.63it/s] 
Processing PCDHGA5--PCDHGC5:  63%|██████▎   | 33/52 [00:03<00:01,  9.62it/s]
Processing PCDHGA5--PCDHGB6:  63%|██████▎   | 33/52 [00:03<00:01,  9.62it/s]
Processing PCDHGA5--PCDHGB6:  65%|██████▌   | 34/52 [00:03<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGC4:  65%|██████▌   | 34/52 [00:03<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGC4:  67%|██████▋   | 35/52 [00:03<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGB7:  67%|██████▋   | 35/52 [00:03<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGB7:  69%|██████▉   | 36/52 [00:03<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA11:  69%|██████▉   | 36/52 [00:03<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA11:  71%|███████   | 37/52 [00:03<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA12:  71%|███████   | 37/52 [00:03<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA12:  73%|███████▎  | 38/52 [00:03<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGA9:  73%|███████▎  | 38/52 [00:03<00:01,  9.63it/s] 
Processing PCDHGA5--PCDHGA9:  75%|███████▌  | 39/52 [00:04<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGC3:  75%|███████▌  | 39/52 [00:04<00:01,  9.63it/s]
Processing PCDHGA5--PCDHGC3:  77%|███████▋  | 40/52 [00:04<00:01,  9.63it/s]
Processing PCDHGA2--PCDHGA8:  77%|███████▋  | 40/52 [00:04<00:01,  9.63it/s]
Processing PCDHGA2--PCDHGA8:  79%|███████▉  | 41/52 [00:04<00:01,  9.63it/s]
Processing PCDHGA2--PCDHGA10:  79%|███████▉  | 41/52 [00:04<00:01,  9.63it/s]
Processing PCDHGA2--PCDHGA10:  81%|████████  | 42/52 [00:04<00:01,  9.63it/s]
Processing PCDHGA2--PCDHGC5:  81%|████████  | 42/52 [00:04<00:01,  9.63it/s] 
Processing PCDHGA2--PCDHGC5:  83%|████████▎ | 43/52 [00:04<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGB6:  83%|████████▎ | 43/52 [00:04<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGB6:  85%|████████▍ | 44/52 [00:04<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGC4:  85%|████████▍ | 44/52 [00:04<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGC4:  87%|████████▋ | 45/52 [00:04<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGB7:  87%|████████▋ | 45/52 [00:04<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGB7:  88%|████████▊ | 46/52 [00:04<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGA11:  88%|████████▊ | 46/52 [00:04<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGA11:  90%|█████████ | 47/52 [00:04<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGA12:  90%|█████████ | 47/52 [00:04<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGA12:  92%|█████████▏| 48/52 [00:04<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGA9:  92%|█████████▏| 48/52 [00:04<00:00,  9.63it/s] 
Processing PCDHGA2--PCDHGA9:  94%|█████████▍| 49/52 [00:05<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGC3:  94%|█████████▍| 49/52 [00:05<00:00,  9.63it/s]
Processing PCDHGA2--PCDHGC3:  96%|█████████▌| 50/52 [00:05<00:00,  9.63it/s]
Processing AC092807.3--DDAH1:  96%|█████████▌| 50/52 [00:05<00:00,  9.63it/s]
Processing AC092807.3--DDAH1:  98%|█████████▊| 51/52 [00:05<00:00,  9.63it/s]
Processing KLRC4--KLRK1:  98%|█████████▊| 51/52 [00:05<00:00,  9.63it/s]     
Processing KLRC4--KLRK1: 100%|██████████| 52/52 [00:05<00:00,  9.63it/s]
Processing KLRC4--KLRK1: 100%|██████████| 52/52 [00:05<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory