Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/e7c68c59ed2dd6e56035981fb157f3/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/09bc545c4dfefcab14787a880df03c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/09bc545c4dfefcab14787a880df03c/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 291939103
unpaired = 5329634
MERGED PAIRED END READS = 291939103
MATES PROCESSED = 589207840
TOTAL READS     = 297268737
DISTINCT READS  = 1.52095e+08
DISTINCT COUNTS = 1560
MAX COUNT       = 1342946
COUNTS OF 1     = 9.83641e+07
MAX TERMS       = 100
OBSERVED COUNTS (1342947)
1	98364058
2	30132087
3	10919379
4	4755300
5	2440270
6	1421813
7	907705
8	618650
9	443755
10	330638
11	253779
12	199207
13	159347
14	130296
15	108086
16	91035
17	76890
18	66014
19	56966
20	49243
21	43342
22	38178
23	33897
24	30158
25	27247
26	24269
27	21886
28	19861
29	17954
30	16574
31	15126
32	13897
33	12774
34	11775
35	10847
36	10051
37	9213
38	8868
39	8161
40	7552
41	7156
42	6667
43	6312
44	5929
45	5660
46	5325
47	5032
48	4807
49	4593
50	4354
51	4040
52	3794
53	3604
54	3567
55	3312
56	3219
57	2925
58	2824
59	2721
60	2576
61	2610
62	2447
63	2341
64	2242
65	2260
66	2096
67	1982
68	1907
69	1782
70	1764
71	1659
72	1609
73	1639
74	1557
75	1471
76	1444
77	1450
78	1388
79	1293
80	1264
81	1229
82	1204
83	1098
84	1085
85	1071
86	1023
87	1025
88	954
89	970
90	827
91	965
92	939
93	856
94	863
95	863
96	794
97	725
98	764
99	686
100	705
101	747
102	659
103	627
104	678
105	660
106	619
107	588
108	606
109	572
110	562
111	544
112	575
113	510
114	526
115	512
116	483
117	516
118	466
119	471
120	478
121	450
122	440
123	442
124	427
125	379
126	428
127	417
128	367
129	382
130	347
131	393
132	320
133	301
134	323
135	334
136	329
137	288
138	316
139	303
140	309
141	276
142	295
143	309
144	286
145	273
146	276
147	275
148	255
149	269
150	251
151	248
152	283
153	258
154	249
155	242
156	252
157	229
158	233
159	235
160	236
161	214
162	212
163	214
164	217
165	198
166	177
167	189
168	229
169	171
170	178
171	202
172	181
173	200
174	206
175	159
176	155
177	160
178	163
179	168
180	177
181	152
182	148
183	157
184	140
185	140
186	166
187	134
188	151
189	145
190	142
191	160
192	141
193	143
194	153
195	149
196	143
197	132
198	105
199	128
200	120
201	148
202	120
203	114
204	104
205	109
206	115
207	101
208	113
209	119
210	126
211	107
212	95
213	86
214	105
215	97
216	116
217	105
218	112
219	83
220	106
221	93
222	106
223	93
224	87
225	75
226	87
227	91
228	109
229	72
230	93
231	89
232	75
233	72
234	83
235	97
236	83
237	91
238	71
239	76
240	69
241	74
242	76
243	65
244	70
245	70
246	88
247	61
248	77
249	75
250	57
251	70
252	69
253	53
254	68
255	67
256	54
257	76
258	52
259	70
260	57
261	61
262	52
263	58
264	48
265	49
266	65
267	65
268	54
269	62
270	59
271	49
272	57
273	50
274	52
275	47
276	46
277	67
278	45
279	57
280	56
281	50
282	63
283	61
284	59
285	52
286	74
287	33
288	50
289	46
290	49
291	40
292	46
293	38
294	46
295	51
296	49
297	38
298	54
299	42
300	49
301	42
302	38
303	47
304	41
305	43
306	45
307	36
308	49
309	39
310	30
311	42
312	44
313	44
314	36
315	46
316	40
317	25
318	33
319	31
320	34
321	34
322	31
323	33
324	25
325	27
326	42
327	30
328	36
329	47
330	30
331	31
332	41
333	38
334	33
335	24
336	30
337	39
338	24
339	46
340	35
341	19
342	31
343	31
344	33
345	23
346	29
347	26
348	27
349	33
350	30
351	32
352	27
353	28
354	27
355	36
356	26
357	33
358	25
359	21
360	28
361	21
362	28
363	21
364	37
365	24
366	32
367	20
368	27
369	24
370	23
371	21
372	28
373	24
374	24
375	20
376	23
377	32
378	14
379	22
380	26
381	15
382	15
383	36
384	17
385	26
386	15
387	16
388	23
389	27
390	21
391	26
392	20
393	16
394	19
395	20
396	10
397	21
398	26
399	21
400	15
401	27
402	21
403	15
404	23
405	24
406	22
407	15
408	16
409	16
410	25
411	18
412	13
413	24
414	21
415	19
416	21
417	20
418	15
419	21
420	13
421	9
422	17
423	16
424	15
425	19
426	25
427	14
428	17
429	27
430	19
431	14
432	17
433	19
434	16
435	18
436	19
437	19
438	20
439	25
440	17
441	13
442	14
443	20
444	16
445	17
446	8
447	17
448	17
449	22
450	14
451	15
452	11
453	17
454	24
455	11
456	17
457	17
458	19
459	5
460	15
461	10
462	19
463	16
464	11
465	12
466	17
467	13
468	14
469	10
470	16
471	10
472	9
473	19
474	10
475	13
476	13
477	14
478	10
479	8
480	7
481	11
482	6
483	12
484	18
485	9
486	7
487	10
488	11
489	12
490	7
491	12
492	9
493	15
494	8
495	14
496	8
497	10
498	19
499	11
500	6
501	10
502	6
503	10
504	10
505	6
506	12
507	5
508	17
509	10
510	12
511	10
512	9
513	12
514	7
515	9
516	14
517	12
518	11
519	6
520	17
521	7
522	10
523	14
524	5
525	13
526	7
527	7
528	8
529	7
530	10
531	11
532	8
533	6
534	14
535	14
536	11
537	5
538	10
539	7
540	9
541	7
542	8
543	7
544	14
545	7
546	8
547	9
548	12
549	8
550	7
551	12
552	5
553	9
554	6
555	6
556	17
557	8
558	6
559	11
560	3
561	7
562	7
563	7
564	9
565	7
566	7
567	9
568	6
569	9
570	8
571	7
572	7
573	6
574	5
575	2
576	11
577	8
578	5
579	12
580	8
581	8
582	7
583	9
584	9
585	8
586	8
587	7
588	9
589	5
590	6
591	3
592	8
593	9
594	6
595	2
596	5
597	4
598	7
599	9
600	5
601	2
602	4
603	5
604	7
605	8
606	6
607	5
608	9
609	4
610	6
611	3
612	7
613	6
614	6
615	7
616	5
617	8
618	5
619	6
620	9
621	2
622	6
623	5
624	5
625	6
626	3
627	7
628	7
629	7
630	7
631	2
632	7
633	2
634	5
635	7
636	4
637	3
638	3
639	6
640	3
641	8
642	9
643	3
644	2
645	3
646	6
647	7
648	4
649	3
650	9
651	9
652	5
653	4
654	6
655	5
656	1
657	4
658	10
659	2
660	6
661	8
662	7
663	3
664	5
665	5
667	4
668	5
669	4
670	6
671	5
672	6
673	10
674	9
675	4
676	7
677	2
678	3
679	5
680	7
681	4
682	9
683	5
684	5
685	4
686	4
687	7
688	1
690	6
691	5
692	5
693	5
694	6
695	5
696	7
697	1
698	6
699	7
700	5
701	3
702	6
703	5
704	2
705	3
706	3
707	2
708	4
709	4
710	4
711	4
712	3
713	7
714	9
715	1
716	4
717	3
718	7
719	5
720	6
721	2
722	2
723	5
724	5
725	3
726	7
727	4
728	3
729	7
730	5
731	7
732	3
733	2
734	4
735	4
736	2
737	2
738	5
739	3
740	1
741	3
742	5
743	3
744	4
745	3
746	6
747	4
748	3
749	5
750	3
751	5
752	7
753	6
754	5
755	2
756	2
757	7
758	7
759	2
760	5
761	1
762	1
763	6
764	5
765	5
766	4
767	5
768	3
769	1
770	2
771	4
772	1
773	1
774	3
775	3
776	4
777	5
778	6
779	2
780	2
781	3
782	3
783	5
784	1
785	3
786	4
787	2
788	3
790	5
791	10
792	2
793	5
794	5
795	2
796	6
797	4
798	2
799	5
803	3
804	8
805	3
806	1
807	1
808	3
809	2
811	1
812	2
813	3
814	3
815	4
816	2
817	1
818	4
820	3
821	1
822	6
823	3
824	6
825	6
826	3
827	2
828	2
829	2
830	2
831	1
832	1
833	3
834	3
835	3
836	5
837	3
838	4
839	1
840	2
841	1
842	1
843	2
844	6
845	1
846	2
847	3
848	5
849	7
850	4
852	2
853	1
854	2
855	1
856	2
857	3
858	2
859	2
860	2
861	3
862	5
863	1
864	3
865	6
866	2
868	3
869	3
870	2
871	2
873	2
874	4
875	1
876	2
877	1
878	1
879	1
880	1
881	2
882	1
883	4
885	3
886	4
887	1
888	2
889	7
890	1
891	1
892	2
893	2
894	3
895	3
896	1
897	2
899	2
900	1
901	7
902	1
903	2
904	3
905	1
907	3
909	2
910	2
911	3
912	3
913	2
914	3
915	3
916	3
917	2
919	6
920	1
921	1
922	4
924	1
926	2
927	2
928	1
929	2
930	2
932	6
933	2
934	3
935	2
936	2
937	3
938	2
939	6
940	3
941	1
942	1
943	2
944	1
945	3
946	4
947	5
948	3
949	3
950	2
951	2
953	1
954	1
955	1
956	3
958	5
959	1
961	2
962	1
964	3
967	4
968	1
969	2
971	1
973	2
976	3
977	2
979	1
980	1
982	3
983	3
985	4
986	1
987	1
988	2
989	5
990	1
991	1
993	2
994	2
995	3
996	1
997	2
999	2
1000	2
1002	1
1004	3
1005	2
1006	2
1007	2
1008	1
1009	1
1010	1
1011	1
1013	1
1014	2
1016	3
1017	3
1019	2
1020	2
1021	2
1023	1
1026	1
1027	2
1031	1
1033	3
1034	2
1035	1
1036	3
1037	1
1039	2
1040	2
1041	4
1042	1
1045	1
1046	2
1048	1
1050	1
1051	3
1052	1
1053	1
1054	2
1058	1
1059	1
1060	1
1061	1
1062	1
1063	1
1065	2
1066	1
1070	1
1074	2
1076	1
1079	2
1080	1
1081	1
1082	3
1084	1
1086	2
1088	3
1090	2
1092	1
1093	3
1095	2
1096	1
1097	2
1099	1
1101	2
1102	1
1103	1
1105	1
1108	1
1110	1
1114	2
1115	3
1117	1
1118	2
1120	1
1122	5
1123	2
1124	1
1125	2
1126	1
1127	1
1130	2
1132	2
1133	2
1135	1
1136	2
1137	2
1138	2
1139	1
1140	1
1142	1
1143	2
1144	1
1145	1
1146	1
1147	1
1148	2
1153	4
1154	2
1155	1
1156	2
1157	1
1158	1
1160	1
1161	2
1162	1
1163	1
1164	2
1165	1
1168	1
1169	1
1170	1
1171	1
1173	2
1174	1
1175	3
1176	1
1178	3
1181	1
1182	1
1184	2
1185	2
1186	3
1187	2
1189	2
1190	2
1191	1
1192	2
1194	1
1195	2
1196	2
1198	1
1199	1
1201	1
1204	2
1206	1
1210	1
1211	1
1212	2
1213	2
1214	2
1216	1
1217	1
1218	1
1221	2
1222	2
1226	1
1227	1
1229	1
1230	1
1231	1
1232	1
1235	1
1237	1
1238	2
1239	1
1243	1
1244	2
1247	1
1249	2
1252	1
1253	1
1254	1
1255	1
1256	1
1257	1
1258	1
1266	1
1267	1
1268	1
1274	1
1275	1
1277	1
1278	1
1279	2
1280	3
1281	2
1282	2
1285	1
1289	1
1290	1
1291	1
1292	1
1293	3
1294	1
1295	1
1296	1
1298	1
1299	2
1302	1
1303	2
1305	2
1306	1
1311	1
1313	1
1314	1
1316	1
1317	2
1321	2
1324	3
1327	2
1328	2
1329	2
1333	1
1335	1
1337	1
1338	1
1339	1
1342	1
1343	1
1345	1
1349	1
1351	1
1359	1
1361	2
1363	1
1368	1
1370	2
1372	1
1375	1
1376	2
1379	1
1381	1
1382	4
1383	1
1385	1
1388	1
1390	1
1394	1
1396	1
1397	2
1398	2
1399	1
1400	1
1401	1
1402	1
1403	1
1407	1
1410	2
1413	1
1415	1
1416	1
1417	2
1418	1
1420	1
1421	1
1422	1
1423	1
1424	1
1427	1
1428	1
1432	1
1433	1
1434	1
1437	2
1438	1
1439	2
1440	1
1444	1
1445	1
1446	1
1452	1
1453	1
1454	1
1455	1
1459	1
1460	1
1467	1
1469	1
1471	1
1474	1
1475	1
1476	1
1478	1
1479	1
1480	4
1484	1
1489	1
1490	1
1493	1
1495	1
1497	1
1498	1
1501	2
1502	1
1508	1
1510	1
1511	1
1513	1
1516	1
1519	1
1526	1
1530	1
1532	1
1534	1
1535	1
1536	1
1539	2
1540	1
1542	1
1543	1
1545	1
1546	1
1549	1
1550	1
1553	1
1554	1
1559	1
1560	1
1569	2
1570	1
1571	2
1573	1
1574	1
1576	1
1578	2
1579	1
1587	2
1592	1
1596	1
1597	2
1599	2
1603	1
1609	1
1610	1
1615	1
1616	1
1617	1
1618	1
1619	1
1621	1
1623	1
1627	1
1630	1
1640	1
1642	1
1643	2
1644	2
1646	1
1647	1
1653	1
1654	1
1655	1
1659	2
1662	1
1664	1
1669	1
1670	1
1672	1
1674	1
1687	1
1688	1
1689	1
1690	1
1697	2
1699	2
1702	1
1705	1
1708	1
1711	1
1715	1
1718	1
1719	2
1720	1
1721	1
1722	1
1726	1
1727	1
1738	1
1741	1
1744	2
1746	1
1748	1
1751	1
1753	1
1756	1
1760	2
1761	1
1766	1
1777	1
1782	1
1785	1
1788	1
1789	2
1790	2
1794	1
1796	2
1803	1
1807	1
1810	1
1811	1
1812	1
1813	2
1814	1
1839	1
1845	1
1847	2
1849	1
1857	1
1861	2
1867	1
1876	1
1877	1
1884	1
1885	1
1891	1
1893	1
1897	1
1898	1
1899	1
1905	1
1906	1
1912	1
1913	1
1920	1
1922	1
1923	1
1927	1
1930	1
1939	1
1957	1
1960	1
1965	1
1966	1
1978	1
1985	1
1986	1
1995	1
2000	2
2006	1
2011	1
2023	1
2027	1
2034	1
2044	1
2048	1
2052	1
2054	1
2059	1
2061	1
2062	1
2092	1
2099	1
2100	1
2102	1
2103	1
2106	1
2107	1
2113	1
2115	1
2116	1
2117	1
2118	2
2130	1
2136	1
2141	1
2142	1
2150	1
2157	1
2163	1
2178	1
2187	1
2191	1
2199	1
2206	1
2214	1
2215	1
2216	1
2220	2
2233	1
2241	1
2242	1
2244	2
2247	1
2255	1
2260	1
2269	1
2307	1
2317	1
2328	1
2334	2
2340	1
2344	1
2391	1
2393	1
2397	1
2404	1
2405	1
2410	1
2429	1
2439	1
2454	2
2480	1
2487	1
2517	1
2523	1
2536	1
2556	1
2560	1
2596	1
2606	1
2673	1
2690	1
2738	1
2743	1
2754	1
2761	1
2769	1
2776	1
2789	1
2799	1
2845	1
2858	1
2867	1
2898	1
2906	1
2917	1
2943	1
2948	1
2955	1
2968	1
2973	1
2989	2
3001	1
3007	1
3034	1
3045	1
3055	1
3056	1
3066	1
3080	1
3099	1
3102	1
3115	1
3155	1
3158	1
3176	1
3266	1
3283	1
3285	1
3293	1
3301	1
3309	1
3346	1
3348	1
3372	1
3381	1
3580	1
3625	1
3643	1
3676	1
3699	1
3700	1
3719	1
3732	1
3762	1
3795	1
3821	1
3882	1
3971	1
4044	1
4057	1
4130	1
4231	1
4376	1
4418	2
4487	1
4498	1
4528	1
4530	1
4550	1
4615	1
4643	1
4693	1
4772	1
4816	1
4905	1
4918	1
5166	1
5265	1
5517	1
5862	1
6104	1
6491	1
6734	1
7504	1
7519	1
8746	1
8893	1
9626	1
9696	1
10130	1
10676	1
13233	1
29672	1
1342946	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
........_........................__.._.._..............._..._....._.....
__..._..._._......._............._.........
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]