Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/83acd15904a456e451d79f51b52ec7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/3890fa91286a6918704a491051759f/659_bGW-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/83acd15904a456e451d79f51b52ec7/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/35/18b1decae41e9bc03974590c50c365/659_bGW-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bGW-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (15820921) splicing reads. 262505 splicing junctions. 186235 known splicing junctions. 76270 novel splicing junctions.
sampling 10% (31641843) splicing reads. 325224 splicing junctions. 199512 known splicing junctions. 125712 novel splicing junctions.
sampling 15% (47462765) splicing reads. 371570 splicing junctions. 206865 known splicing junctions. 164705 novel splicing junctions.
sampling 20% (63283687) splicing reads. 408914 splicing junctions. 211812 known splicing junctions. 197102 novel splicing junctions.
sampling 25% (79104609) splicing reads. 440488 splicing junctions. 215491 known splicing junctions. 224997 novel splicing junctions.
sampling 30% (94925531) splicing reads. 467311 splicing junctions. 218256 known splicing junctions. 249055 novel splicing junctions.
sampling 35% (110746453) splicing reads. 491113 splicing junctions. 220499 known splicing junctions. 270614 novel splicing junctions.
sampling 40% (126567375) splicing reads. 511824 splicing junctions. 222310 known splicing junctions. 289514 novel splicing junctions.
sampling 45% (142388297) splicing reads. 530348 splicing junctions. 223906 known splicing junctions. 306442 novel splicing junctions.
sampling 50% (158209219) splicing reads. 546647 splicing junctions. 225273 known splicing junctions. 321374 novel splicing junctions.
sampling 55% (174030141) splicing reads. 561010 splicing junctions. 226414 known splicing junctions. 334596 novel splicing junctions.
sampling 60% (189851063) splicing reads. 573652 splicing junctions. 227305 known splicing junctions. 346347 novel splicing junctions.
sampling 65% (205671985) splicing reads. 584856 splicing junctions. 228152 known splicing junctions. 356704 novel splicing junctions.
sampling 70% (221492907) splicing reads. 594719 splicing junctions. 228831 known splicing junctions. 365888 novel splicing junctions.
sampling 75% (237313829) splicing reads. 603414 splicing junctions. 229467 known splicing junctions. 373947 novel splicing junctions.
sampling 80% (253134751) splicing reads. 610783 splicing junctions. 229970 known splicing junctions. 380813 novel splicing junctions.
sampling 85% (268955673) splicing reads. 617084 splicing junctions. 230405 known splicing junctions. 386679 novel splicing junctions.
sampling 90% (284776595) splicing reads. 622443 splicing junctions. 230727 known splicing junctions. 391716 novel splicing junctions.
sampling 95% (300597517) splicing reads. 626899 splicing junctions. 231013 known splicing junctions. 395886 novel splicing junctions.
sampling 100% (316418439) splicing reads. 630461 splicing junctions. 231257 known splicing junctions. 399204 novel splicing junctions.
null device 
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