Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/ad185525d9a45aaf9b25d22aca9b40/659_bIB-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/c76f61aa33855edd62741d21802f3a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/11/c76f61aa33855edd62741d21802f3a/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 293531238
unpaired = 4685734
MERGED PAIRED END READS = 293531238
MATES PROCESSED = 591748210
TOTAL READS     = 298216972
DISTINCT READS  = 1.66384e+08
DISTINCT COUNTS = 1064
MAX COUNT       = 979434
COUNTS OF 1     = 1.11482e+08
MAX TERMS       = 100
OBSERVED COUNTS (979435)
1	111482038
2	32095220
3	11092922
4	4639870
5	2295197
6	1296338
7	812547
8	544667
9	384534
10	285153
11	216983
12	169956
13	135748
14	110043
15	91222
16	75974
17	64606
18	54952
19	47464
20	41144
21	35891
22	31452
23	27873
24	24816
25	22273
26	19731
27	18092
28	16437
29	14916
30	13524
31	12281
32	11205
33	10258
34	9689
35	9039
36	8301
37	7522
38	7018
39	6482
40	6128
41	5740
42	5359
43	5027
44	4718
45	4479
46	4265
47	3907
48	3713
49	3477
50	3355
51	3253
52	2882
53	2871
54	2598
55	2589
56	2432
57	2282
58	2219
59	2140
60	2052
61	1936
62	1841
63	1790
64	1608
65	1635
66	1590
67	1401
68	1392
69	1335
70	1278
71	1302
72	1195
73	1172
74	1112
75	1044
76	1083
77	999
78	981
79	918
80	924
81	838
82	876
83	851
84	762
85	742
86	751
87	715
88	655
89	658
90	646
91	651
92	649
93	607
94	580
95	541
96	561
97	513
98	502
99	482
100	492
101	484
102	452
103	453
104	403
105	405
106	403
107	430
108	370
109	394
110	357
111	369
112	364
113	331
114	334
115	338
116	316
117	311
118	319
119	288
120	284
121	293
122	278
123	232
124	282
125	256
126	232
127	209
128	222
129	227
130	242
131	217
132	201
133	216
134	213
135	200
136	199
137	204
138	189
139	181
140	176
141	171
142	175
143	172
144	160
145	169
146	162
147	166
148	149
149	150
150	155
151	149
152	147
153	153
154	148
155	131
156	138
157	147
158	119
159	121
160	135
161	120
162	130
163	130
164	131
165	119
166	121
167	114
168	115
169	113
170	90
171	113
172	103
173	105
174	85
175	108
176	92
177	71
178	121
179	75
180	96
181	102
182	96
183	79
184	90
185	81
186	86
187	78
188	97
189	81
190	67
191	94
192	70
193	92
194	64
195	76
196	66
197	66
198	80
199	79
200	61
201	88
202	62
203	50
204	68
205	62
206	50
207	59
208	57
209	42
210	57
211	42
212	63
213	49
214	62
215	55
216	45
217	48
218	43
219	53
220	38
221	40
222	62
223	40
224	42
225	49
226	39
227	48
228	45
229	41
230	42
231	42
232	54
233	44
234	43
235	42
236	47
237	32
238	36
239	37
240	45
241	34
242	36
243	42
244	29
245	37
246	33
247	30
248	37
249	33
250	36
251	34
252	43
253	27
254	34
255	28
256	34
257	31
258	39
259	31
260	32
261	24
262	35
263	33
264	21
265	34
266	24
267	26
268	24
269	22
270	17
271	32
272	32
273	22
274	30
275	18
276	22
277	29
278	21
279	20
280	29
281	24
282	21
283	32
284	26
285	28
286	17
287	26
288	33
289	23
290	23
291	28
292	21
293	24
294	23
295	20
296	19
297	20
298	18
299	29
300	13
301	15
302	19
303	23
304	15
305	17
306	19
307	22
308	22
309	28
310	13
311	22
312	12
313	16
314	17
315	12
316	16
317	20
318	13
319	8
320	9
321	19
322	15
323	11
324	12
325	11
326	18
327	13
328	17
329	11
330	13
331	14
332	17
333	15
334	17
335	16
336	5
337	13
338	13
339	10
340	13
341	14
342	10
343	12
344	5
345	11
346	13
347	15
348	14
349	17
350	10
351	15
352	14
353	13
354	11
355	14
356	14
357	13
358	8
359	10
360	12
361	7
362	7
363	12
364	14
365	8
366	13
367	8
368	9
369	8
370	8
371	8
372	17
373	8
374	9
375	10
376	11
377	11
378	9
379	10
380	9
381	12
382	8
383	17
384	11
385	5
386	8
387	10
388	10
389	8
390	7
391	6
392	7
393	5
394	12
395	11
396	4
397	11
398	9
399	4
400	8
401	9
402	9
403	13
404	8
405	8
406	15
407	11
408	8
409	3
410	12
411	10
412	8
413	6
414	7
415	8
416	5
417	5
418	5
419	8
420	9
421	8
422	7
423	8
424	6
425	8
426	8
427	6
428	9
429	4
430	3
431	9
432	8
433	4
434	7
435	4
436	6
437	11
438	5
439	4
440	6
441	3
442	1
443	6
444	6
445	7
446	7
447	7
448	6
449	4
450	2
451	10
452	5
453	1
454	3
455	4
456	7
457	4
458	5
459	7
460	3
461	4
462	3
463	2
464	8
465	10
466	8
467	8
468	1
469	1
470	8
471	3
472	7
473	6
474	5
475	4
476	2
477	6
478	4
479	6
480	5
481	4
482	3
483	5
484	1
485	2
486	7
487	2
488	2
489	4
490	2
491	4
492	4
493	3
494	4
495	3
496	4
497	3
498	3
499	4
500	2
501	8
502	5
503	5
504	2
505	5
506	3
507	3
508	5
509	3
510	3
511	5
512	1
513	4
514	6
515	4
516	5
517	7
518	7
519	4
520	1
521	3
522	4
523	7
524	1
526	6
527	2
528	3
529	2
530	2
531	7
532	1
533	2
534	3
536	6
538	4
539	6
540	4
541	2
542	3
543	3
544	3
545	3
546	4
547	7
548	1
549	4
550	6
551	5
553	1
554	4
555	3
556	2
557	4
558	3
559	2
560	1
563	2
564	6
565	6
566	1
567	2
568	3
569	7
570	4
571	3
572	6
573	3
574	2
575	4
576	6
577	5
578	4
579	6
580	3
581	6
582	1
583	3
584	2
585	4
586	4
587	3
588	3
589	2
590	3
591	2
592	1
593	4
594	5
595	1
596	1
597	2
598	3
599	1
600	4
601	2
602	1
603	1
604	2
605	2
606	1
607	1
608	3
609	2
610	3
611	6
612	3
613	5
614	1
615	3
616	1
618	1
619	3
620	4
621	1
622	2
623	1
624	4
625	2
626	2
627	1
629	3
630	6
632	3
634	3
635	1
636	1
638	4
639	2
640	1
642	1
643	2
644	4
645	3
646	2
647	1
648	5
649	2
650	1
651	4
652	2
653	2
654	2
656	2
657	4
658	4
659	3
660	2
663	2
664	2
665	2
667	3
668	3
669	1
671	5
673	2
674	1
675	1
677	1
678	1
679	1
680	1
681	3
682	2
684	4
685	2
686	1
687	1
688	3
689	2
690	2
691	2
692	3
693	3
694	2
695	1
697	2
698	1
700	1
702	2
703	3
705	2
706	3
707	1
708	2
709	1
710	1
712	2
714	2
715	1
716	3
717	3
719	2
720	1
722	4
723	1
724	1
725	2
727	1
729	2
730	2
731	1
732	2
733	6
734	2
738	2
740	3
741	2
742	1
743	1
744	1
746	1
748	3
749	1
750	5
751	2
756	1
757	2
759	1
760	2
763	1
764	2
766	1
767	4
768	2
769	3
770	1
771	1
772	1
773	1
776	1
777	1
778	1
779	1
781	2
782	3
784	1
785	1
787	1
790	2
791	1
792	3
794	1
795	1
797	1
798	2
800	2
801	4
802	1
805	1
809	1
811	2
812	1
816	1
818	1
819	3
820	1
821	1
823	1
825	1
826	1
830	2
831	1
833	3
834	1
836	1
838	1
839	1
843	1
844	1
846	1
847	2
848	1
849	1
856	2
857	1
858	2
859	2
862	1
863	1
865	1
868	1
869	2
875	1
876	1
877	1
878	1
879	1
884	1
885	3
887	2
889	1
892	1
895	1
896	4
897	1
898	1
900	1
901	1
905	1
911	1
913	2
914	1
922	2
924	1
925	1
928	4
929	1
930	1
933	3
935	1
936	1
939	1
940	2
943	3
944	2
946	3
949	1
953	1
955	1
957	1
958	1
959	1
960	1
961	1
964	1
965	2
966	1
967	1
968	1
969	1
979	1
985	1
986	3
987	1
991	1
993	1
997	1
998	1
1001	1
1002	1
1006	2
1013	2
1019	1
1022	1
1023	1
1024	1
1031	2
1035	1
1037	1
1038	1
1041	2
1044	1
1049	1
1059	2
1060	1
1066	1
1069	1
1074	1
1075	1
1076	1
1077	1
1082	1
1084	1
1089	1
1092	1
1094	1
1096	1
1097	1
1099	1
1100	1
1103	1
1105	1
1111	2
1113	1
1115	1
1116	1
1117	1
1118	2
1124	1
1127	1
1131	1
1134	1
1136	1
1141	1
1144	1
1150	1
1152	1
1154	1
1156	1
1160	1
1163	1
1167	1
1170	1
1171	1
1173	2
1179	1
1181	1
1182	1
1183	1
1189	1
1193	1
1198	1
1204	1
1218	1
1219	1
1221	1
1223	1
1224	1
1235	3
1236	1
1238	1
1243	3
1247	1
1249	1
1254	1
1258	2
1260	1
1262	1
1269	1
1277	1
1278	1
1281	1
1284	1
1287	2
1297	1
1302	1
1309	1
1310	1
1314	1
1322	1
1323	1
1326	2
1329	2
1335	1
1337	1
1346	1
1349	1
1354	1
1357	1
1360	2
1362	1
1363	1
1366	1
1372	1
1376	1
1382	1
1388	1
1389	1
1392	1
1393	1
1402	1
1404	1
1405	1
1407	1
1409	2
1413	1
1416	2
1425	1
1429	1
1434	1
1435	1
1439	1
1440	1
1445	1
1448	1
1449	2
1453	1
1457	1
1461	1
1471	1
1472	1
1503	1
1506	2
1507	1
1536	1
1540	1
1543	1
1550	1
1569	1
1571	1
1578	1
1581	1
1587	2
1595	1
1608	1
1611	1
1623	1
1636	1
1654	1
1671	1
1701	1
1716	1
1722	1
1744	1
1745	1
1757	1
1759	1
1774	1
1777	1
1787	1
1791	1
1801	1
1805	1
1814	1
1816	1
1819	1
1829	1
1831	1
1842	1
1844	1
1845	1
1850	1
1874	1
1880	1
1913	1
1930	1
1949	1
1950	1
1973	1
1982	1
2038	1
2044	1
2047	1
2060	1
2073	1
2143	1
2147	1
2186	1
2199	1
2218	1
2271	1
2318	1
2330	1
2345	1
2362	1
2383	1
2392	1
2445	1
2565	1
2578	1
2579	1
2617	1
2638	1
2672	1
2692	1
2786	1
2842	1
2860	1
2953	1
2992	1
3073	1
3108	1
3142	1
3674	1
3909	1
4127	1
4289	1
5305	1
5652	1
6662	1
7188	1
8174	1
21731	1
979434	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
_..........._..__.._._...___.__.._....._......__...........___........_.
_._.__.__.__...._._...__...___......._.......__......_._._.......__...
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]