[W::hts_idx_load3] The index file is older than the data file: 659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	279985322
Known Splicing Events:	277313700
Partial Novel Splicing Events:	1405564
Novel Splicing Events:	1190910
Filtered Splicing Events:	75148

Total splicing  Junctions:	510597
Known Splicing Junctions:	272697
Partial Novel Splicing Junctions:	141061
Novel Splicing Junctions:	96839

===================================================================
Create BED file ...
Create Interact file ...