Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/ce342ec72a56a63b3c624087e67a95/659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/b3a6f238ce2819f01c6028b0ae215e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/b3a6f238ce2819f01c6028b0ae215e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/9742a23f2a3c7761b1ce7d9ad23ac5/659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 279985322
[W::hts_idx_load3] The index file is older than the data file: 659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	279985322
Known Splicing Events:	277313700
Partial Novel Splicing Events:	1405564
Novel Splicing Events:	1190910
Filtered Splicing Events:	75148

Total splicing  Junctions:	510597
Known Splicing Junctions:	272697
Partial Novel Splicing Junctions:	141061
Novel Splicing Junctions:	96839

===================================================================
Create BED file ...
Create Interact file ...