Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 4933
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 4933
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:4933
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 1 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC015911.9--SLFN12L HAVANA mRNA 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^ENST00000260908.12" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC020637.1--TMEM243 HAVANA gene 12778 19800 . + . FI_gene_label "TMEM243^ENSG00000135185.12" ; ID "AC020637.1--TMEM243^TMEM243^ENSG00000135185.12" ; ccdsid "CCDS5602.1" ; exon_id "ENSE00001207780.5" ; exon_number 1 ; gene_id "AC020637.1--TMEM243^TMEM243^ENSG00000135185.12" ; gene_name TMEM243 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130823.8" ; havana_transcript "OTTHUMT00000253377.4" ; hgnc_id "HGNC:21707" ; level 2 ; orig_coord_info "chr7,87219426,87219503,-" ; protein_id "ENSP00000257637.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC020637.1--TMEM243^ENST00000257637.8" ; transcript_name "TMEM243-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC020637.1--TMEM243 HAVANA mRNA 12778 19800 . + . FI_gene_label "TMEM243^ENSG00000135185.12" ; ID "AC020637.1--TMEM243^ENST00000257637.8" ; Parent "AC020637.1--TMEM243^TMEM243^ENSG00000135185.12" ; ccdsid "CCDS5602.1" ; exon_id "ENSE00001207780.5" ; exon_number 1 ; gene_id "AC020637.1--TMEM243^TMEM243^ENSG00000135185.12" ; gene_name TMEM243 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130823.8" ; havana_transcript "OTTHUMT00000253377.4" ; hgnc_id "HGNC:21707" ; level 2 ; orig_coord_info "chr7,87219426,87219503,-" ; protein_id "ENSP00000257637.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC020637.1--TMEM243^ENST00000257637.8" ; transcript_name "TMEM243-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC083805.1--EEF1AKMT3 HAVANA gene 14982 19922 . + . FI_gene_label "EEF1AKMT3^ENSG00000123427.17" ; ID "AC083805.1--EEF1AKMT3^EEF1AKMT3^ENSG00000123427.17" ; ccdsid "CCDS8957.1" ; exon_id "ENSE00002301479.2" ; exon_number 1 ; gene_id "AC083805.1--EEF1AKMT3^EEF1AKMT3^ENSG00000123427.17" ; gene_name EEF1AKMT3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170459.2" ; havana_transcript "OTTHUMT00000409268.2" ; hgnc_id "HGNC:24936" ; level 2 ; orig_coord_info "chr12,57772725,57772901,+" ; protein_id "ENSP00000300209.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC083805.1--EEF1AKMT3^ENST00000300209.13" ; transcript_name "EEF1AKMT3-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC083805.1--EEF1AKMT3 HAVANA mRNA 14982 19922 . + . FI_gene_label "EEF1AKMT3^ENSG00000123427.17" ; ID "AC083805.1--EEF1AKMT3^ENST00000300209.13" ; Parent "AC083805.1--EEF1AKMT3^EEF1AKMT3^ENSG00000123427.17" ; ccdsid "CCDS8957.1" ; exon_id "ENSE00002301479.2" ; exon_number 1 ; gene_id "AC083805.1--EEF1AKMT3^EEF1AKMT3^ENSG00000123427.17" ; gene_name EEF1AKMT3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170459.2" ; havana_transcript "OTTHUMT00000409268.2" ; hgnc_id "HGNC:24936" ; level 2 ; orig_coord_info "chr12,57772725,57772901,+" ; protein_id "ENSP00000300209.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC083805.1--EEF1AKMT3^ENST00000300209.13" ; transcript_name "EEF1AKMT3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC083805.1--TSFM HAVANA gene 13875 20936 . + . FI_gene_label "TSFM^ENSG00000123297.20" ; ID "AC083805.1--TSFM^TSFM^ENSG00000123297.20" ; ccdsid "CCDS53809.1" ; exon_id "ENSE00001479920.3" ; exon_number 1 ; gene_id "AC083805.1--TSFM^TSFM^ENSG00000123297.20" ; gene_name TSFM ; gene_type protein_coding ; havana_gene "OTTHUMG00000153042.13" ; havana_transcript "OTTHUMT00000329193.1" ; hgnc_id "HGNC:12367" ; level 2 ; orig_coord_info "chr12,57782802,57782858,+" ; protein_id "ENSP00000313877.8" ; tag basic appris_alternative_2 CCDS ; transcript_id "AC083805.1--TSFM^ENST00000323833.12" ; transcript_name "TSFM-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC083805.1--TSFM HAVANA mRNA 13875 20936 . + . FI_gene_label "TSFM^ENSG00000123297.20" ; ID "AC083805.1--TSFM^ENST00000323833.12" ; Parent "AC083805.1--TSFM^TSFM^ENSG00000123297.20" ; ccdsid "CCDS53809.1" ; exon_id "ENSE00001479920.3" ; exon_number 1 ; gene_id "AC083805.1--TSFM^TSFM^ENSG00000123297.20" ; gene_name TSFM ; gene_type protein_coding ; havana_gene "OTTHUMG00000153042.13" ; havana_transcript "OTTHUMT00000329193.1" ; hgnc_id "HGNC:12367" ; level 2 ; orig_coord_info "chr12,57782802,57782858,+" ; protein_id "ENSP00000313877.8" ; tag basic appris_alternative_2 CCDS ; transcript_id "AC083805.1--TSFM^ENST00000323833.12" ; transcript_name "TSFM-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^ENST00000239859.8" ; Parent "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^ENST00000317764.6" ; Parent "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCNY--AL353600.1 ENSEMBL gene 7867 24173 . + . FI_gene_label "CCNY^ENSG00000108100.18" ; ID "CCNY--AL353600.1^CCNY^ENSG00000108100.18" ; ccdsid "CCDS7190.1" ; exon_id "ENSE00003652968.1" ; exon_number 3 ; gene_id "CCNY--AL353600.1^CCNY^ENSG00000108100.18" ; gene_name CCNY ; gene_type protein_coding ; havana_gene "OTTHUMG00000017955.5" ; hgnc_id "HGNC:23354" ; level 3 ; orig_coord_info "chr10,35483412,35483478,+" ; protein_id "ENSP00000265375.9" ; tag basic CCDS ; transcript_id "CCNY--AL353600.1^ENST00000265375.13" ; transcript_name "CCNY-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCNY--AL353600.1 ENSEMBL mRNA 7867 24173 . + . FI_gene_label "CCNY^ENSG00000108100.18" ; ID "CCNY--AL353600.1^ENST00000265375.13" ; Parent "CCNY--AL353600.1^CCNY^ENSG00000108100.18" ; ccdsid "CCDS7190.1" ; exon_id "ENSE00003652968.1" ; exon_number 3 ; gene_id "CCNY--AL353600.1^CCNY^ENSG00000108100.18" ; gene_name CCNY ; gene_type protein_coding ; havana_gene "OTTHUMG00000017955.5" ; hgnc_id "HGNC:23354" ; level 3 ; orig_coord_info "chr10,35483412,35483478,+" ; protein_id "ENSP00000265375.9" ; tag basic CCDS ; transcript_id "CCNY--AL353600.1^ENST00000265375.13" ; transcript_name "CCNY-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCNY--AL353600.2 ENSEMBL gene 7867 24173 . + . FI_gene_label "CCNY^ENSG00000108100.18" ; ID "CCNY--AL353600.2^CCNY^ENSG00000108100.18" ; ccdsid "CCDS7190.1" ; exon_id "ENSE00003652968.1" ; exon_number 3 ; gene_id "CCNY--AL353600.2^CCNY^ENSG00000108100.18" ; gene_name CCNY ; gene_type protein_coding ; havana_gene "OTTHUMG00000017955.5" ; hgnc_id "HGNC:23354" ; level 3 ; orig_coord_info "chr10,35483412,35483478,+" ; protein_id "ENSP00000265375.9" ; tag basic CCDS ; transcript_id "CCNY--AL353600.2^ENST00000265375.13" ; transcript_name "CCNY-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCNY--AL353600.2 ENSEMBL mRNA 7867 24173 . + . FI_gene_label "CCNY^ENSG00000108100.18" ; ID "CCNY--AL353600.2^ENST00000265375.13" ; Parent "CCNY--AL353600.2^CCNY^ENSG00000108100.18" ; ccdsid "CCDS7190.1" ; exon_id "ENSE00003652968.1" ; exon_number 3 ; gene_id "CCNY--AL353600.2^CCNY^ENSG00000108100.18" ; gene_name CCNY ; gene_type protein_coding ; havana_gene "OTTHUMG00000017955.5" ; hgnc_id "HGNC:23354" ; level 3 ; orig_coord_info "chr10,35483412,35483478,+" ; protein_id "ENSP00000265375.9" ; tag basic CCDS ; transcript_id "CCNY--AL353600.2^ENST00000265375.13" ; transcript_name "CCNY-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CPSF6--TMBIM4 HAVANA gene 1048 12978 . + . FI_gene_label "CPSF6^ENSG00000111605.18" ; ID "CPSF6--TMBIM4^CPSF6^ENSG00000111605.18" ; ccdsid "CCDS73494.1" ; exon_id "ENSE00002424959.1" ; exon_number 1 ; gene_id "CPSF6--TMBIM4^CPSF6^ENSG00000111605.18" ; gene_name CPSF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169340.4" ; havana_transcript "OTTHUMT00000403613.1" ; hgnc_id "HGNC:13871" ; level 2 ; orig_coord_info "chr12,69239647,69239706,+" ; protein_id "ENSP00000266679.8" ; tag basic appris_alternative_1 CCDS ; transcript_id "CPSF6--TMBIM4^ENST00000266679.8" ; transcript_name "CPSF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
CPSF6--TMBIM4 HAVANA mRNA 1048 12978 . + . FI_gene_label "CPSF6^ENSG00000111605.18" ; ID "CPSF6--TMBIM4^ENST00000266679.8" ; Parent "CPSF6--TMBIM4^CPSF6^ENSG00000111605.18" ; ccdsid "CCDS73494.1" ; exon_id "ENSE00002424959.1" ; exon_number 1 ; gene_id "CPSF6--TMBIM4^CPSF6^ENSG00000111605.18" ; gene_name CPSF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169340.4" ; havana_transcript "OTTHUMT00000403613.1" ; hgnc_id "HGNC:13871" ; level 2 ; orig_coord_info "chr12,69239647,69239706,+" ; protein_id "ENSP00000266679.8" ; tag basic appris_alternative_1 CCDS ; transcript_id "CPSF6--TMBIM4^ENST00000266679.8" ; transcript_name "CPSF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CPSF6--TMBIM4 HAVANA gene 20508 31252 . + . FI_gene_label "TMBIM4^ENSG00000155957.18" ; ID "CPSF6--TMBIM4^TMBIM4^ENSG00000155957.18" ; ccdsid "CCDS61187.1" ; exon_id "ENSE00002285776.1" ; exon_number 1 ; gene_id "CPSF6--TMBIM4^TMBIM4^ENSG00000155957.18" ; gene_name TMBIM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168973.5" ; havana_transcript "OTTHUMT00000401833.3" ; hgnc_id "HGNC:24257" ; level 1 ; orig_coord_info "chr12,66169855,66169951,-" ; protein_id "ENSP00000286424.9" ; tag basic exp_conf CCDS ; transcript_id "CPSF6--TMBIM4^ENST00000286424.12" ; transcript_name "TMBIM4-201" ; transcript_support_level 5 ; transcript_type protein_coding
CPSF6--TMBIM4 HAVANA mRNA 20508 31252 . + . FI_gene_label "TMBIM4^ENSG00000155957.18" ; ID "CPSF6--TMBIM4^ENST00000286424.12" ; Parent "CPSF6--TMBIM4^TMBIM4^ENSG00000155957.18" ; ccdsid "CCDS61187.1" ; exon_id "ENSE00002285776.1" ; exon_number 1 ; gene_id "CPSF6--TMBIM4^TMBIM4^ENSG00000155957.18" ; gene_name TMBIM4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168973.5" ; havana_transcript "OTTHUMT00000401833.3" ; hgnc_id "HGNC:24257" ; level 1 ; orig_coord_info "chr12,66169855,66169951,-" ; protein_id "ENSP00000286424.9" ; tag basic exp_conf CCDS ; transcript_id "CPSF6--TMBIM4^ENST00000286424.12" ; transcript_name "TMBIM4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
EEF1AKMT3--CTDSP2 HAVANA gene 2123 7063 . + . FI_gene_label "EEF1AKMT3^ENSG00000123427.17" ; ID "EEF1AKMT3--CTDSP2^EEF1AKMT3^ENSG00000123427.17" ; ccdsid "CCDS8957.1" ; exon_id "ENSE00002301479.2" ; exon_number 1 ; gene_id "EEF1AKMT3--CTDSP2^EEF1AKMT3^ENSG00000123427.17" ; gene_name EEF1AKMT3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170459.2" ; havana_transcript "OTTHUMT00000409268.2" ; hgnc_id "HGNC:24936" ; level 2 ; orig_coord_info "chr12,57772725,57772901,+" ; protein_id "ENSP00000300209.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EEF1AKMT3--CTDSP2^ENST00000300209.13" ; transcript_name "EEF1AKMT3-201" ; transcript_support_level 1 ; transcript_type protein_coding
EEF1AKMT3--CTDSP2 HAVANA mRNA 2123 7063 . + . FI_gene_label "EEF1AKMT3^ENSG00000123427.17" ; ID "EEF1AKMT3--CTDSP2^ENST00000300209.13" ; Parent "EEF1AKMT3--CTDSP2^EEF1AKMT3^ENSG00000123427.17" ; ccdsid "CCDS8957.1" ; exon_id "ENSE00002301479.2" ; exon_number 1 ; gene_id "EEF1AKMT3--CTDSP2^EEF1AKMT3^ENSG00000123427.17" ; gene_name EEF1AKMT3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170459.2" ; havana_transcript "OTTHUMT00000409268.2" ; hgnc_id "HGNC:24936" ; level 2 ; orig_coord_info "chr12,57772725,57772901,+" ; protein_id "ENSP00000300209.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EEF1AKMT3--CTDSP2^ENST00000300209.13" ; transcript_name "EEF1AKMT3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EEF1AKMT3--CTDSP2 HAVANA gene 10064 20364 . + . FI_gene_label "CTDSP2^ENSG00000175215.11" ; ID "EEF1AKMT3--CTDSP2^CTDSP2^ENSG00000175215.11" ; ccdsid "CCDS41801.1" ; exon_id "ENSE00001377388.4" ; exon_number 1 ; gene_id "EEF1AKMT3--CTDSP2^CTDSP2^ENSG00000175215.11" ; gene_name CTDSP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170483.3" ; havana_transcript "OTTHUMT00000409353.2" ; hgnc_id "HGNC:17077" ; level 2 ; orig_coord_info "chr12,57846372,57846435,-" ; protein_id "ENSP00000381148.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EEF1AKMT3--CTDSP2^ENST00000398073.7" ; transcript_name "CTDSP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
EEF1AKMT3--CTDSP2 HAVANA mRNA 10064 20364 . + . FI_gene_label "CTDSP2^ENSG00000175215.11" ; ID "EEF1AKMT3--CTDSP2^ENST00000398073.7" ; Parent "EEF1AKMT3--CTDSP2^CTDSP2^ENSG00000175215.11" ; ccdsid "CCDS41801.1" ; exon_id "ENSE00001377388.4" ; exon_number 1 ; gene_id "EEF1AKMT3--CTDSP2^CTDSP2^ENSG00000175215.11" ; gene_name CTDSP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170483.3" ; havana_transcript "OTTHUMT00000409353.2" ; hgnc_id "HGNC:17077" ; level 2 ; orig_coord_info "chr12,57846372,57846435,-" ; protein_id "ENSP00000381148.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EEF1AKMT3--CTDSP2^ENST00000398073.7" ; transcript_name "CTDSP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MARCHF9--AC023141.7 HAVANA gene 1001 6266 . + . FI_gene_label "MARCHF9^ENSG00000139266.6" ; ID "MARCHF9--AC023141.7^MARCHF9^ENSG00000139266.6" ; ccdsid "CCDS31847.1" ; exon_id "ENSE00001336994.4" ; exon_number 1 ; gene_id "MARCHF9--AC023141.7^MARCHF9^ENSG00000139266.6" ; gene_name MARCHF9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170456.2" ; havana_transcript "OTTHUMT00000409244.2" ; hgnc_id "HGNC:25139" ; level 2 ; orig_coord_info "chr12,57755529,57755885,+" ; protein_id "ENSP00000266643.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MARCHF9--AC023141.7^ENST00000266643.6" ; transcript_name "MARCHF9-201" ; transcript_support_level 1 ; transcript_type protein_coding
MARCHF9--AC023141.7 HAVANA mRNA 1001 6266 . + . FI_gene_label "MARCHF9^ENSG00000139266.6" ; ID "MARCHF9--AC023141.7^ENST00000266643.6" ; Parent "MARCHF9--AC023141.7^MARCHF9^ENSG00000139266.6" ; ccdsid "CCDS31847.1" ; exon_id "ENSE00001336994.4" ; exon_number 1 ; gene_id "MARCHF9--AC023141.7^MARCHF9^ENSG00000139266.6" ; gene_name MARCHF9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170456.2" ; havana_transcript "OTTHUMT00000409244.2" ; hgnc_id "HGNC:25139" ; level 2 ; orig_coord_info "chr12,57755529,57755885,+" ; protein_id "ENSP00000266643.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MARCHF9--AC023141.7^ENST00000266643.6" ; transcript_name "MARCHF9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MARCHF9--AC128676.1 HAVANA gene 1001 6266 . + . FI_gene_label "MARCHF9^ENSG00000139266.6" ; ID "MARCHF9--AC128676.1^MARCHF9^ENSG00000139266.6" ; ccdsid "CCDS31847.1" ; exon_id "ENSE00001336994.4" ; exon_number 1 ; gene_id "MARCHF9--AC128676.1^MARCHF9^ENSG00000139266.6" ; gene_name MARCHF9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170456.2" ; havana_transcript "OTTHUMT00000409244.2" ; hgnc_id "HGNC:25139" ; level 2 ; orig_coord_info "chr12,57755529,57755885,+" ; protein_id "ENSP00000266643.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MARCHF9--AC128676.1^ENST00000266643.6" ; transcript_name "MARCHF9-201" ; transcript_support_level 1 ; transcript_type protein_coding
MARCHF9--AC128676.1 HAVANA mRNA 1001 6266 . + . FI_gene_label "MARCHF9^ENSG00000139266.6" ; ID "MARCHF9--AC128676.1^ENST00000266643.6" ; Parent "MARCHF9--AC128676.1^MARCHF9^ENSG00000139266.6" ; ccdsid "CCDS31847.1" ; exon_id "ENSE00001336994.4" ; exon_number 1 ; gene_id "MARCHF9--AC128676.1^MARCHF9^ENSG00000139266.6" ; gene_name MARCHF9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170456.2" ; havana_transcript "OTTHUMT00000409244.2" ; hgnc_id "HGNC:25139" ; level 2 ; orig_coord_info "chr12,57755529,57755885,+" ; protein_id "ENSP00000266643.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MARCHF9--AC128676.1^ENST00000266643.6" ; transcript_name "MARCHF9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MARCHF9--GRIP1 HAVANA gene 1001 6266 . + . FI_gene_label "MARCHF9^ENSG00000139266.6" ; ID "MARCHF9--GRIP1^MARCHF9^ENSG00000139266.6" ; ccdsid "CCDS31847.1" ; exon_id "ENSE00001336994.4" ; exon_number 1 ; gene_id "MARCHF9--GRIP1^MARCHF9^ENSG00000139266.6" ; gene_name MARCHF9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170456.2" ; havana_transcript "OTTHUMT00000409244.2" ; hgnc_id "HGNC:25139" ; level 2 ; orig_coord_info "chr12,57755529,57755885,+" ; protein_id "ENSP00000266643.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MARCHF9--GRIP1^ENST00000266643.6" ; transcript_name "MARCHF9-201" ; transcript_support_level 1 ; transcript_type protein_coding
MARCHF9--GRIP1 HAVANA mRNA 1001 6266 . + . FI_gene_label "MARCHF9^ENSG00000139266.6" ; ID "MARCHF9--GRIP1^ENST00000266643.6" ; Parent "MARCHF9--GRIP1^MARCHF9^ENSG00000139266.6" ; ccdsid "CCDS31847.1" ; exon_id "ENSE00001336994.4" ; exon_number 1 ; gene_id "MARCHF9--GRIP1^MARCHF9^ENSG00000139266.6" ; gene_name MARCHF9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170456.2" ; havana_transcript "OTTHUMT00000409244.2" ; hgnc_id "HGNC:25139" ; level 2 ; orig_coord_info "chr12,57755529,57755885,+" ; protein_id "ENSP00000266643.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MARCHF9--GRIP1^ENST00000266643.6" ; transcript_name "MARCHF9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MARCHF9--GRIP1 HAVANA gene 12783 45280 . + . FI_gene_label "GRIP1^ENSG00000155974.13" ; ID "MARCHF9--GRIP1^GRIP1^ENSG00000155974.13" ; exon_id "ENSE00003912333.1" ; exon_number 1 ; gene_id "MARCHF9--GRIP1^GRIP1^ENSG00000155974.13" ; gene_name GRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169019.7" ; hgnc_id "HGNC:18708" ; level 2 ; orig_coord_info "chr12,66678850,66678904,-" ; protein_id "ENSP00000352780.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 ; transcript_id "MARCHF9--GRIP1^ENST00000359742.9" ; transcript_name "GRIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
MARCHF9--GRIP1 HAVANA mRNA 12783 45280 . + . FI_gene_label "GRIP1^ENSG00000155974.13" ; ID "MARCHF9--GRIP1^ENST00000359742.9" ; Parent "MARCHF9--GRIP1^GRIP1^ENSG00000155974.13" ; exon_id "ENSE00003912333.1" ; exon_number 1 ; gene_id "MARCHF9--GRIP1^GRIP1^ENSG00000155974.13" ; gene_name GRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169019.7" ; hgnc_id "HGNC:18708" ; level 2 ; orig_coord_info "chr12,66678850,66678904,-" ; protein_id "ENSP00000352780.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 ; transcript_id "MARCHF9--GRIP1^ENST00000359742.9" ; transcript_name "GRIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MRPS35--TMTC1 HAVANA gene 1011 10930 . + . FI_gene_label "MRPS35^ENSG00000061794.13" ; ID "MRPS35--TMTC1^MRPS35^ENSG00000061794.13" ; ccdsid "CCDS8714.1" ; exon_id "ENSE00001008074.3" ; exon_number 1 ; gene_id "MRPS35--TMTC1^MRPS35^ENSG00000061794.13" ; gene_name MRPS35 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169215.2" ; havana_transcript "OTTHUMT00000402897.2" ; hgnc_id "HGNC:16635" ; level 2 ; orig_coord_info "chr12,27710844,27710955,+" ; protein_id "ENSP00000081029.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MRPS35--TMTC1^ENST00000081029.8" ; transcript_name "MRPS35-201" ; transcript_support_level 1 ; transcript_type protein_coding
MRPS35--TMTC1 HAVANA mRNA 1011 10930 . + . FI_gene_label "MRPS35^ENSG00000061794.13" ; ID "MRPS35--TMTC1^ENST00000081029.8" ; Parent "MRPS35--TMTC1^MRPS35^ENSG00000061794.13" ; ccdsid "CCDS8714.1" ; exon_id "ENSE00001008074.3" ; exon_number 1 ; gene_id "MRPS35--TMTC1^MRPS35^ENSG00000061794.13" ; gene_name MRPS35 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169215.2" ; havana_transcript "OTTHUMT00000402897.2" ; hgnc_id "HGNC:16635" ; level 2 ; orig_coord_info "chr12,27710844,27710955,+" ; protein_id "ENSP00000081029.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MRPS35--TMTC1^ENST00000081029.8" ; transcript_name "MRPS35-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MRPS35--TMTC1 HAVANA gene 13931 51649 . + . FI_gene_label "TMTC1^ENSG00000133687.16" ; ID "MRPS35--TMTC1^TMTC1^ENSG00000133687.16" ; ccdsid "CCDS8718.1" ; exon_id "ENSE00003646738.1" ; exon_number 2 ; gene_id "MRPS35--TMTC1^TMTC1^ENSG00000133687.16" ; gene_name TMTC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169324.2" ; havana_transcript "OTTHUMT00000403503.1" ; hgnc_id "HGNC:24099" ; level 2 ; orig_coord_info "chr12,29767898,29768053,-" ; protein_id "ENSP00000256062.5" ; tag basic CCDS ; transcript_id "MRPS35--TMTC1^ENST00000256062.9" ; transcript_name "TMTC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MRPS35--TMTC1 HAVANA mRNA 13931 51649 . + . FI_gene_label "TMTC1^ENSG00000133687.16" ; ID "MRPS35--TMTC1^ENST00000256062.9" ; Parent "MRPS35--TMTC1^TMTC1^ENSG00000133687.16" ; ccdsid "CCDS8718.1" ; exon_id "ENSE00003646738.1" ; exon_number 2 ; gene_id "MRPS35--TMTC1^TMTC1^ENSG00000133687.16" ; gene_name TMTC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169324.2" ; havana_transcript "OTTHUMT00000403503.1" ; hgnc_id "HGNC:24099" ; level 2 ; orig_coord_info "chr12,29767898,29768053,-" ; protein_id "ENSP00000256062.5" ; tag basic CCDS ; transcript_id "MRPS35--TMTC1^ENST00000256062.9" ; transcript_name "TMTC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NCOA4--GLUD1P2 HAVANA gene 1017 13344 . + . FI_gene_label "NCOA4^ENSG00000266412.6" ; ID "NCOA4--GLUD1P2^NCOA4^ENSG00000266412.6" ; ccdsid "CCDS73094.1" ; exon_id "ENSE00002732991.1" ; exon_number 2 ; gene_id "NCOA4--GLUD1P2^NCOA4^ENSG00000266412.6" ; gene_name NCOA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188314.1" ; havana_transcript "OTTHUMT00000476878.1" ; hgnc_id "HGNC:7671" ; level 2 ; orig_coord_info "chr10,46027432,46027465,-" ; protein_id "ENSP00000463027.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "NCOA4--GLUD1P2^ENST00000578454.5" ; transcript_name "NCOA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
NCOA4--GLUD1P2 HAVANA mRNA 1017 13344 . + . FI_gene_label "NCOA4^ENSG00000266412.6" ; ID "NCOA4--GLUD1P2^ENST00000578454.5" ; Parent "NCOA4--GLUD1P2^NCOA4^ENSG00000266412.6" ; ccdsid "CCDS73094.1" ; exon_id "ENSE00002732991.1" ; exon_number 2 ; gene_id "NCOA4--GLUD1P2^NCOA4^ENSG00000266412.6" ; gene_name NCOA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000188314.1" ; havana_transcript "OTTHUMT00000476878.1" ; hgnc_id "HGNC:7671" ; level 2 ; orig_coord_info "chr10,46027432,46027465,-" ; protein_id "ENSP00000463027.1" ; tag basic appris_alternative_2 CCDS ; transcript_id "NCOA4--GLUD1P2^ENST00000578454.5" ; transcript_name "NCOA4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 HAVANA gene 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHA13 HAVANA mRNA 14666 23106 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA4--PCDHA13^ENST00000289272.3" ; Parent "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHA13 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHA13 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHA13^ENST00000378125.4" ; Parent "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHA13^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHA13^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 HAVANA gene 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC1 HAVANA mRNA 14666 24681 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA4--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC1 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC1 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC1^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC1^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC1^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 HAVANA gene 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA4--PCDHAC2 HAVANA mRNA 14672 25407 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA4--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA4--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA4--PCDHAC2 ENSEMBL gene 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
PCDHA4--PCDHAC2 ENSEMBL mRNA 1001 3590 . + . FI_gene_label "PCDHA4^ENSG00000204967.12" ; ID "PCDHA4--PCDHAC2^ENST00000378125.4" ; Parent "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; exon_id "ENSE00003735925.1" ; exon_number 1 ; gene_id "PCDHA4--PCDHAC2^PCDHA4^ENSG00000204967.12" ; gene_name PCDHA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163360.5" ; hgnc_id "HGNC:8670" ; level 3 ; orig_coord_info "chr5,140806929,140806945,+" ; protein_id "ENSP00000367365.4" ; tag basic ; transcript_id "PCDHA4--PCDHAC2^ENST00000378125.4" ; transcript_name "PCDHA4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA10 HAVANA gene 6885 16338 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA10 HAVANA mRNA 6885 16338 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA3--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA10 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA10 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA10^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA11 HAVANA gene 6700 15505 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA11 HAVANA mRNA 6700 15505 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA3--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA11 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA11 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA11^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA12 HAVANA gene 6696 14588 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA12 HAVANA mRNA 6696 14588 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA3--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA12 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA12 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA12^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA8 HAVANA gene 9172 18352 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA8 HAVANA mRNA 9172 18352 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA3--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA8 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA8 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA8^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA9 HAVANA gene 6717 14444 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA9 HAVANA mRNA 6717 14444 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA3--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA9 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA9 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA9^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB6 HAVANA gene 6878 16477 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGB6 HAVANA mRNA 6878 16477 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA3--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB6 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGB6 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB6^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB7 HAVANA gene 6728 14657 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGB7 HAVANA mRNA 6728 14657 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA3--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB7 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGB7 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB7^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC3 HAVANA gene 6715 16901 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGC3 HAVANA mRNA 6715 16901 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA3--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC3 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGC3 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC3^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC4 HAVANA gene 6873 14669 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGC4 HAVANA mRNA 6873 14669 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA3--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC4 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGC4 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC4^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC5 HAVANA gene 6696 14721 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGC5 HAVANA mRNA 6696 14721 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA3--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC5 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGC5 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC5^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 6881 16334 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA4--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA10 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA10 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA10^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA10^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA10^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 6696 15501 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA4--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA11 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA11 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA11^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA11^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA11^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 6692 14584 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA4--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA12 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA12 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA12^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA12^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA12^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 9168 18348 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA4--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA8 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA8 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA8^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA8^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA8^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 6713 14440 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA4--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGA9 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGA9 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGA9^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGA9^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGA9^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 6874 16473 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA4--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB6 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB6 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB6^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB6^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB6^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 6724 14653 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA4--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGB7 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGB7 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGB7^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGB7^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGB7^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 6711 16897 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA4--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC3 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC3 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC3^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC3^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC3^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 6869 14665 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA4--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC4 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC4 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC4^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC4^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC4^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 6692 14717 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA4--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA4--PCDHGC5 HAVANA gene 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA4--PCDHGC5 HAVANA mRNA 1001 3691 . + . FI_gene_label "PCDHGA4^ENSG00000262576.3" ; ID "PCDHGA4--PCDHGC5^ENST00000612927.1" ; Parent "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; ccdsid "CCDS75331.1" ; exon_id "ENSE00003715198.1" ; exon_number 1 ; gene_id "PCDHGA4--PCDHGC5^PCDHGA4^ENSG00000262576.3" ; gene_name PCDHGA4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177593.4" ; havana_transcript "OTTHUMT00000476684.1" ; hgnc_id "HGNC:8702" ; level 2 ; orig_coord_info "chr5,141355108,141357660,+" ; protein_id "ENSP00000477894.1" ; tag basic CCDS ; transcript_id "PCDHGA4--PCDHGC5^ENST00000612927.1" ; transcript_name "PCDHGA4-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA10 HAVANA gene 9840 19293 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA10 HAVANA mRNA 9840 19293 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA6--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA10 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA10 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA10^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA11 HAVANA gene 9655 18460 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA11 HAVANA mRNA 9655 18460 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA6--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA11 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA11 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA11^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA12 HAVANA gene 9651 17543 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA12 HAVANA mRNA 9651 17543 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA6--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA12 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA12 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA12^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA8 HAVANA gene 12127 21307 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA8 HAVANA mRNA 12127 21307 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA6--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA8 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA8 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA8^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA9 HAVANA gene 9672 17399 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA9 HAVANA mRNA 9672 17399 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA6--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA9 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA9 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA9^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB6 HAVANA gene 9833 19432 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGB6 HAVANA mRNA 9833 19432 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA6--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB6 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGB6 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB6^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB7 HAVANA gene 9683 17612 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGB7 HAVANA mRNA 9683 17612 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA6--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB7 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGB7 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB7^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC3 HAVANA gene 9670 19856 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC3 HAVANA mRNA 9670 19856 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA6--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC3 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC3 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC3^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC4 HAVANA gene 9828 17624 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC4 HAVANA mRNA 9828 17624 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA6--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC4 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC4 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC4^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC5 HAVANA gene 9651 17676 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC5 HAVANA mRNA 9651 17676 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA6--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC5 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC5 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC5^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PPP2R3B--TMLHE HAVANA gene 22666 34361 . + . FI_gene_label "TMLHE^ENSG00000185973.12" ; ID "PPP2R3B--TMLHE^TMLHE^ENSG00000185973.12" ; ccdsid "CCDS14768.1" ; exon_id "ENSE00003660615.1" ; exon_number 2 ; gene_id "PPP2R3B--TMLHE^TMLHE^ENSG00000185973.12" ; gene_name TMLHE ; gene_type protein_coding ; havana_gene "OTTHUMG00000022674.3" ; havana_transcript "OTTHUMT00000058817.2" ; hgnc_id "HGNC:18308" ; level 2 ; orig_coord_info "chrX,155545096,155545276,-" ; protein_id "ENSP00000335261.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPP2R3B--TMLHE^ENST00000334398.8" ; transcript_name "TMLHE-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPP2R3B--TMLHE HAVANA mRNA 22666 34361 . + . FI_gene_label "TMLHE^ENSG00000185973.12" ; ID "PPP2R3B--TMLHE^ENST00000334398.8" ; Parent "PPP2R3B--TMLHE^TMLHE^ENSG00000185973.12" ; ccdsid "CCDS14768.1" ; exon_id "ENSE00003660615.1" ; exon_number 2 ; gene_id "PPP2R3B--TMLHE^TMLHE^ENSG00000185973.12" ; gene_name TMLHE ; gene_type protein_coding ; havana_gene "OTTHUMG00000022674.3" ; havana_transcript "OTTHUMT00000058817.2" ; hgnc_id "HGNC:18308" ; level 2 ; orig_coord_info "chrX,155545096,155545276,-" ; protein_id "ENSP00000335261.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPP2R3B--TMLHE^ENST00000334398.8" ; transcript_name "TMLHE-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPP2R3B--TMLHE HAVANA gene 2589 6257 . + . FI_gene_label "PPP2R3B^ENSG00000167393.18" ; ID "PPP2R3B--TMLHE^PPP2R3B^ENSG00000167393.18" ; exon_id "ENSE00001489321.3" ; exon_number 1 ; gene_id "PPP2R3B--TMLHE^PPP2R3B^ENSG00000167393.18" ; gene_name PPP2R3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000021052.4" ; havana_transcript "OTTHUMT00000055578.3" ; hgnc_id "HGNC:13417" ; level 2 ; orig_coord_info "chrX,373532,373771,-" ; protein_id "ENSP00000371038.4" ; tag mRNA_end_NF cds_end_NF ; transcript_id "PPP2R3B--TMLHE^ENST00000381625.9" ; transcript_name "PPP2R3B-201" ; transcript_support_level 5 ; transcript_type protein_coding
PPP2R3B--TMLHE HAVANA mRNA 2589 6257 . + . FI_gene_label "PPP2R3B^ENSG00000167393.18" ; ID "PPP2R3B--TMLHE^ENST00000381625.9" ; Parent "PPP2R3B--TMLHE^PPP2R3B^ENSG00000167393.18" ; exon_id "ENSE00001489321.3" ; exon_number 1 ; gene_id "PPP2R3B--TMLHE^PPP2R3B^ENSG00000167393.18" ; gene_name PPP2R3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000021052.4" ; havana_transcript "OTTHUMT00000055578.3" ; hgnc_id "HGNC:13417" ; level 2 ; orig_coord_info "chrX,373532,373771,-" ; protein_id "ENSP00000371038.4" ; tag mRNA_end_NF cds_end_NF ; transcript_id "PPP2R3B--TMLHE^ENST00000381625.9" ; transcript_name "PPP2R3B-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RAP1B--SRGAP1 HAVANA gene 1045 26964 . + . FI_gene_label "RAP1B^ENSG00000127314.18" ; ID "RAP1B--SRGAP1^RAP1B^ENSG00000127314.18" ; ccdsid "CCDS8984.1" ; exon_id "ENSE00003505440.1" ; exon_number 2 ; gene_id "RAP1B--SRGAP1^RAP1B^ENSG00000127314.18" ; gene_name RAP1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000133660.8" ; havana_transcript "OTTHUMT00000257821.5" ; hgnc_id "HGNC:9857" ; level 2 ; orig_coord_info "chr12,68648725,68648781,+" ; protein_id "ENSP00000250559.9" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RAP1B--SRGAP1^ENST00000250559.14" ; transcript_name "RAP1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
RAP1B--SRGAP1 HAVANA mRNA 1045 26964 . + . FI_gene_label "RAP1B^ENSG00000127314.18" ; ID "RAP1B--SRGAP1^ENST00000250559.14" ; Parent "RAP1B--SRGAP1^RAP1B^ENSG00000127314.18" ; ccdsid "CCDS8984.1" ; exon_id "ENSE00003505440.1" ; exon_number 2 ; gene_id "RAP1B--SRGAP1^RAP1B^ENSG00000127314.18" ; gene_name RAP1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000133660.8" ; havana_transcript "OTTHUMT00000257821.5" ; hgnc_id "HGNC:9857" ; level 2 ; orig_coord_info "chr12,68648725,68648781,+" ; protein_id "ENSP00000250559.9" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RAP1B--SRGAP1^ENST00000250559.14" ; transcript_name "RAP1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RAP1B--SRGAP1 HAVANA gene 29965 75316 . + . FI_gene_label "SRGAP1^ENSG00000196935.9" ; ID "RAP1B--SRGAP1^SRGAP1^ENSG00000196935.9" ; ccdsid "CCDS8967.1" ; exon_id "ENSE00002278180.2" ; exon_number 1 ; gene_id "RAP1B--SRGAP1^SRGAP1^ENSG00000196935.9" ; gene_name SRGAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168750.3" ; havana_transcript "OTTHUMT00000400896.3" ; hgnc_id "HGNC:17382" ; level 2 ; orig_coord_info "chr12,63844817,63844883,+" ; protein_id "ENSP00000347198.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RAP1B--SRGAP1^ENST00000355086.8" ; transcript_name "SRGAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
RAP1B--SRGAP1 HAVANA mRNA 29965 75316 . + . FI_gene_label "SRGAP1^ENSG00000196935.9" ; ID "RAP1B--SRGAP1^ENST00000355086.8" ; Parent "RAP1B--SRGAP1^SRGAP1^ENSG00000196935.9" ; ccdsid "CCDS8967.1" ; exon_id "ENSE00002278180.2" ; exon_number 1 ; gene_id "RAP1B--SRGAP1^SRGAP1^ENSG00000196935.9" ; gene_name SRGAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168750.3" ; havana_transcript "OTTHUMT00000400896.3" ; hgnc_id "HGNC:17382" ; level 2 ; orig_coord_info "chr12,63844817,63844883,+" ; protein_id "ENSP00000347198.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RAP1B--SRGAP1^ENST00000355086.8" ; transcript_name "SRGAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SAV1--SOS2 HAVANA gene 14032 42500 . + . FI_gene_label "SOS2^ENSG00000100485.12" ; ID "SAV1--SOS2^SOS2^ENSG00000100485.12" ; ccdsid "CCDS9697.1" ; exon_id "ENSE00002525812.2" ; exon_number 1 ; gene_id "SAV1--SOS2^SOS2^ENSG00000100485.12" ; gene_name SOS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140292.5" ; havana_transcript "OTTHUMT00000276878.4" ; hgnc_id "HGNC:11188" ; level 2 ; orig_coord_info "chr14,50231197,50231283,-" ; protein_id "ENSP00000216373.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SAV1--SOS2^ENST00000216373.10" ; transcript_name "SOS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SAV1--SOS2 HAVANA mRNA 14032 42500 . + . FI_gene_label "SOS2^ENSG00000100485.12" ; ID "SAV1--SOS2^ENST00000216373.10" ; Parent "SAV1--SOS2^SOS2^ENSG00000100485.12" ; ccdsid "CCDS9697.1" ; exon_id "ENSE00002525812.2" ; exon_number 1 ; gene_id "SAV1--SOS2^SOS2^ENSG00000100485.12" ; gene_name SOS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140292.5" ; havana_transcript "OTTHUMT00000276878.4" ; hgnc_id "HGNC:11188" ; level 2 ; orig_coord_info "chr14,50231197,50231283,-" ; protein_id "ENSP00000216373.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SAV1--SOS2^ENST00000216373.10" ; transcript_name "SOS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SAV1--SOS2 HAVANA gene 1001 9509 . + . FI_gene_label "SAV1^ENSG00000151748.15" ; ID "SAV1--SOS2^SAV1^ENSG00000151748.15" ; ccdsid "CCDS9701.1" ; exon_id "ENSE00001246829.5" ; exon_number 1 ; gene_id "SAV1--SOS2^SAV1^ENSG00000151748.15" ; gene_name SAV1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140293.8" ; havana_transcript "OTTHUMT00000276879.2" ; hgnc_id "HGNC:17795" ; level 2 ; orig_coord_info "chr14,50667874,50667967,-" ; protein_id "ENSP00000324729.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SAV1--SOS2^ENST00000324679.5" ; transcript_name "SAV1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SAV1--SOS2 HAVANA mRNA 1001 9509 . + . FI_gene_label "SAV1^ENSG00000151748.15" ; ID "SAV1--SOS2^ENST00000324679.5" ; Parent "SAV1--SOS2^SAV1^ENSG00000151748.15" ; ccdsid "CCDS9701.1" ; exon_id "ENSE00001246829.5" ; exon_number 1 ; gene_id "SAV1--SOS2^SAV1^ENSG00000151748.15" ; gene_name SAV1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140293.8" ; havana_transcript "OTTHUMT00000276879.2" ; hgnc_id "HGNC:17795" ; level 2 ; orig_coord_info "chr14,50667874,50667967,-" ; protein_id "ENSP00000324729.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SAV1--SOS2^ENST00000324679.5" ; transcript_name "SAV1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SRGAP1--GRIP1 HAVANA gene 1001 46352 . + . FI_gene_label "SRGAP1^ENSG00000196935.9" ; ID "SRGAP1--GRIP1^SRGAP1^ENSG00000196935.9" ; ccdsid "CCDS8967.1" ; exon_id "ENSE00002278180.2" ; exon_number 1 ; gene_id "SRGAP1--GRIP1^SRGAP1^ENSG00000196935.9" ; gene_name SRGAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168750.3" ; havana_transcript "OTTHUMT00000400896.3" ; hgnc_id "HGNC:17382" ; level 2 ; orig_coord_info "chr12,63844817,63844883,+" ; protein_id "ENSP00000347198.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SRGAP1--GRIP1^ENST00000355086.8" ; transcript_name "SRGAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SRGAP1--GRIP1 HAVANA mRNA 1001 46352 . + . FI_gene_label "SRGAP1^ENSG00000196935.9" ; ID "SRGAP1--GRIP1^ENST00000355086.8" ; Parent "SRGAP1--GRIP1^SRGAP1^ENSG00000196935.9" ; ccdsid "CCDS8967.1" ; exon_id "ENSE00002278180.2" ; exon_number 1 ; gene_id "SRGAP1--GRIP1^SRGAP1^ENSG00000196935.9" ; gene_name SRGAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168750.3" ; havana_transcript "OTTHUMT00000400896.3" ; hgnc_id "HGNC:17382" ; level 2 ; orig_coord_info "chr12,63844817,63844883,+" ; protein_id "ENSP00000347198.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SRGAP1--GRIP1^ENST00000355086.8" ; transcript_name "SRGAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SRGAP1--GRIP1 HAVANA gene 52869 85366 . + . FI_gene_label "GRIP1^ENSG00000155974.13" ; ID "SRGAP1--GRIP1^GRIP1^ENSG00000155974.13" ; exon_id "ENSE00003912333.1" ; exon_number 1 ; gene_id "SRGAP1--GRIP1^GRIP1^ENSG00000155974.13" ; gene_name GRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169019.7" ; hgnc_id "HGNC:18708" ; level 2 ; orig_coord_info "chr12,66678850,66678904,-" ; protein_id "ENSP00000352780.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 ; transcript_id "SRGAP1--GRIP1^ENST00000359742.9" ; transcript_name "GRIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
SRGAP1--GRIP1 HAVANA mRNA 52869 85366 . + . FI_gene_label "GRIP1^ENSG00000155974.13" ; ID "SRGAP1--GRIP1^ENST00000359742.9" ; Parent "SRGAP1--GRIP1^GRIP1^ENSG00000155974.13" ; exon_id "ENSE00003912333.1" ; exon_number 1 ; gene_id "SRGAP1--GRIP1^GRIP1^ENSG00000155974.13" ; gene_name GRIP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169019.7" ; hgnc_id "HGNC:18708" ; level 2 ; orig_coord_info "chr12,66678850,66678904,-" ; protein_id "ENSP00000352780.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 ; transcript_id "SRGAP1--GRIP1^ENST00000359742.9" ; transcript_name "GRIP1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMEM243--AC020637.1 HAVANA gene 1856 8878 . + . FI_gene_label "TMEM243^ENSG00000135185.12" ; ID "TMEM243--AC020637.1^TMEM243^ENSG00000135185.12" ; ccdsid "CCDS5602.1" ; exon_id "ENSE00001207780.5" ; exon_number 1 ; gene_id "TMEM243--AC020637.1^TMEM243^ENSG00000135185.12" ; gene_name TMEM243 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130823.8" ; havana_transcript "OTTHUMT00000253377.4" ; hgnc_id "HGNC:21707" ; level 2 ; orig_coord_info "chr7,87219426,87219503,-" ; protein_id "ENSP00000257637.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM243--AC020637.1^ENST00000257637.8" ; transcript_name "TMEM243-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMEM243--AC020637.1 HAVANA mRNA 1856 8878 . + . FI_gene_label "TMEM243^ENSG00000135185.12" ; ID "TMEM243--AC020637.1^ENST00000257637.8" ; Parent "TMEM243--AC020637.1^TMEM243^ENSG00000135185.12" ; ccdsid "CCDS5602.1" ; exon_id "ENSE00001207780.5" ; exon_number 1 ; gene_id "TMEM243--AC020637.1^TMEM243^ENSG00000135185.12" ; gene_name TMEM243 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130823.8" ; havana_transcript "OTTHUMT00000253377.4" ; hgnc_id "HGNC:21707" ; level 2 ; orig_coord_info "chr7,87219426,87219503,-" ; protein_id "ENSP00000257637.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMEM243--AC020637.1^ENST00000257637.8" ; transcript_name "TMEM243-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TYW1--VKORC1L1 HAVANA gene 2339 20501 . + . FI_gene_label "TYW1^ENSG00000198874.13" ; ID "TYW1--VKORC1L1^TYW1^ENSG00000198874.13" ; ccdsid "CCDS5538.1" ; exon_id "ENSE00001947681.2" ; exon_number 1 ; gene_id "TYW1--VKORC1L1^TYW1^ENSG00000198874.13" ; gene_name TYW1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129723.5" ; havana_transcript "OTTHUMT00000251932.3" ; hgnc_id "HGNC:25598" ; level 2 ; orig_coord_info "chr7,66996979,66996982,+" ; protein_id "ENSP00000352645.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TYW1--VKORC1L1^ENST00000359626.10" ; transcript_name "TYW1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TYW1--VKORC1L1 HAVANA mRNA 2339 20501 . + . FI_gene_label "TYW1^ENSG00000198874.13" ; ID "TYW1--VKORC1L1^ENST00000359626.10" ; Parent "TYW1--VKORC1L1^TYW1^ENSG00000198874.13" ; ccdsid "CCDS5538.1" ; exon_id "ENSE00001947681.2" ; exon_number 1 ; gene_id "TYW1--VKORC1L1^TYW1^ENSG00000198874.13" ; gene_name TYW1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129723.5" ; havana_transcript "OTTHUMT00000251932.3" ; hgnc_id "HGNC:25598" ; level 2 ; orig_coord_info "chr7,66996979,66996982,+" ; protein_id "ENSP00000352645.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TYW1--VKORC1L1^ENST00000359626.10" ; transcript_name "TYW1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TYW1--VKORC1L1 HAVANA gene 23507 31593 . + . FI_gene_label "VKORC1L1^ENSG00000196715.7" ; ID "TYW1--VKORC1L1^VKORC1L1^ENSG00000196715.7" ; ccdsid "CCDS5529.1" ; exon_id "ENSE00003846291.1" ; exon_number 1 ; gene_id "TYW1--VKORC1L1^VKORC1L1^ENSG00000196715.7" ; gene_name VKORC1L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129449.5" ; havana_transcript "OTTHUMT00000251612.5" ; hgnc_id "HGNC:21492" ; level 2 ; orig_coord_info "chr7,65873372,65873565,+" ; protein_id "ENSP00000353998.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TYW1--VKORC1L1^ENST00000360768.5" ; transcript_name "VKORC1L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TYW1--VKORC1L1 HAVANA mRNA 23507 31593 . + . FI_gene_label "VKORC1L1^ENSG00000196715.7" ; ID "TYW1--VKORC1L1^ENST00000360768.5" ; Parent "TYW1--VKORC1L1^VKORC1L1^ENSG00000196715.7" ; ccdsid "CCDS5529.1" ; exon_id "ENSE00003846291.1" ; exon_number 1 ; gene_id "TYW1--VKORC1L1^VKORC1L1^ENSG00000196715.7" ; gene_name VKORC1L1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129449.5" ; havana_transcript "OTTHUMT00000251612.5" ; hgnc_id "HGNC:21492" ; level 2 ; orig_coord_info "chr7,65873372,65873565,+" ; protein_id "ENSP00000353998.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TYW1--VKORC1L1^ENST00000360768.5" ; transcript_name "VKORC1L1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VGLL4--ATG7 HAVANA gene 4453 29477 . + . FI_gene_label "VGLL4^ENSG00000144560.15" ; ID "VGLL4--ATG7^VGLL4^ENSG00000144560.15" ; ccdsid "CCDS2606.1" ; exon_id "ENSE00003614736.1" ; exon_number 2 ; gene_id "VGLL4--ATG7^VGLL4^ENSG00000144560.15" ; gene_name VGLL4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129739.21" ; havana_transcript "OTTHUMT00000251950.2" ; hgnc_id "HGNC:28966" ; level 2 ; orig_coord_info "chr3,11702971,11703034,-" ; protein_id "ENSP00000273038.3" ; tag basic CCDS ; transcript_id "VGLL4--ATG7^ENST00000273038.7" ; transcript_name "VGLL4-201" ; transcript_support_level 1 ; transcript_type protein_coding
VGLL4--ATG7 HAVANA mRNA 4453 29477 . + . FI_gene_label "VGLL4^ENSG00000144560.15" ; ID "VGLL4--ATG7^ENST00000273038.7" ; Parent "VGLL4--ATG7^VGLL4^ENSG00000144560.15" ; ccdsid "CCDS2606.1" ; exon_id "ENSE00003614736.1" ; exon_number 2 ; gene_id "VGLL4--ATG7^VGLL4^ENSG00000144560.15" ; gene_name VGLL4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129739.21" ; havana_transcript "OTTHUMT00000251950.2" ; hgnc_id "HGNC:28966" ; level 2 ; orig_coord_info "chr3,11702971,11703034,-" ; protein_id "ENSP00000273038.3" ; tag basic CCDS ; transcript_id "VGLL4--ATG7^ENST00000273038.7" ; transcript_name "VGLL4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VGLL4--ATG7 HAVANA gene 32586 67624 . + . FI_gene_label "ATG7^ENSG00000197548.12" ; ID "VGLL4--ATG7^ATG7^ENSG00000197548.12" ; ccdsid "CCDS2605.1" ; exon_id "ENSE00003638636.1" ; exon_number 2 ; gene_id "VGLL4--ATG7^ATG7^ENSG00000197548.12" ; gene_name ATG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129740.21" ; havana_transcript "OTTHUMT00000251951.3" ; hgnc_id "HGNC:16935" ; level 2 ; orig_coord_info "chr3,11298696,11298855,+" ; protein_id "ENSP00000346437.3" ; tag basic appris_principal_1 CCDS ; transcript_id "VGLL4--ATG7^ENST00000354449.7" ; transcript_name "ATG7-201" ; transcript_support_level 1 ; transcript_type protein_coding
VGLL4--ATG7 HAVANA mRNA 32586 67624 . + . FI_gene_label "ATG7^ENSG00000197548.12" ; ID "VGLL4--ATG7^ENST00000354449.7" ; Parent "VGLL4--ATG7^ATG7^ENSG00000197548.12" ; ccdsid "CCDS2605.1" ; exon_id "ENSE00003638636.1" ; exon_number 2 ; gene_id "VGLL4--ATG7^ATG7^ENSG00000197548.12" ; gene_name ATG7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129740.21" ; havana_transcript "OTTHUMT00000251951.3" ; hgnc_id "HGNC:16935" ; level 2 ; orig_coord_info "chr3,11298696,11298855,+" ; protein_id "ENSP00000346437.3" ; tag basic appris_principal_1 CCDS ; transcript_id "VGLL4--ATG7^ENST00000354449.7" ; transcript_name "ATG7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
AC015911.9--SLFN12L HAVANA RNA 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^ENST00000650652.2" ; Parent "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC015911.9--SLFN12L ENSEMBL gene 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
AC015911.9--SLFN12L ENSEMBL RNA 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^ENST00000675965.1" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
L1 and L2 created:
AC020637.1--TMEM243 HAVANA gene 1001 8922 . + . FI_gene_label "AC020637.1^ENSG00000258231.5" ; ID "AC020637.1--TMEM243^AC020637.1^ENSG00000258231.5" ; exon_id "ENSE00002337014.1" ; exon_number 1 ; gene_id "AC020637.1--TMEM243^AC020637.1^ENSG00000258231.5" ; gene_name "AC020637.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169963.2" ; havana_transcript "OTTHUMT00000406685.1" ; level 1 ; orig_coord_info "chr12,58544124,58544179,+" ; tag basic exp_conf ; transcript_id "AC020637.1--TMEM243^ENST00000546977.5" ; transcript_name "AC020637.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
AC020637.1--TMEM243 HAVANA RNA 1001 8922 . + . FI_gene_label "AC020637.1^ENSG00000258231.5" ; ID "AC020637.1--TMEM243^ENST00000546977.5" ; Parent "AC020637.1--TMEM243^AC020637.1^ENSG00000258231.5" ; exon_id "ENSE00002337014.1" ; exon_number 1 ; gene_id "AC020637.1--TMEM243^AC020637.1^ENSG00000258231.5" ; gene_name "AC020637.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169963.2" ; havana_transcript "OTTHUMT00000406685.1" ; level 1 ; orig_coord_info "chr12,58544124,58544179,+" ; tag basic exp_conf ; transcript_id "AC020637.1--TMEM243^ENST00000546977.5" ; transcript_name "AC020637.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
AC083805.1--EEF1AKMT3 HAVANA gene 1001 10858 . + . FI_gene_label "AC083805.1^ENSG00000245651.3" ; ID "AC083805.1--EEF1AKMT3^AC083805.1^ENSG00000245651.3" ; exon_id "ENSE00001961223.2" ; exon_number 1 ; gene_id "AC083805.1--EEF1AKMT3^AC083805.1^ENSG00000245651.3" ; gene_name "AC083805.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000170485.11" ; havana_transcript "OTTHUMT00000409363.1" ; level 2 ; orig_coord_info "chr12,57893740,57896482,-" ; tag basic ; transcript_id "AC083805.1--EEF1AKMT3^ENST00000499481.2" ; transcript_name "AC083805.1-202" ; transcript_support_level 1 ; transcript_type lncRNA
AC083805.1--EEF1AKMT3 HAVANA RNA 1001 10858 . + . FI_gene_label "AC083805.1^ENSG00000245651.3" ; ID "AC083805.1--EEF1AKMT3^ENST00000499481.2" ; Parent "AC083805.1--EEF1AKMT3^AC083805.1^ENSG00000245651.3" ; exon_id "ENSE00001961223.2" ; exon_number 1 ; gene_id "AC083805.1--EEF1AKMT3^AC083805.1^ENSG00000245651.3" ; gene_name "AC083805.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000170485.11" ; havana_transcript "OTTHUMT00000409363.1" ; level 2 ; orig_coord_info "chr12,57893740,57896482,-" ; tag basic ; transcript_id "AC083805.1--EEF1AKMT3^ENST00000499481.2" ; transcript_name "AC083805.1-202" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
AC083805.1--TSFM HAVANA gene 1001 10858 . + . FI_gene_label "AC083805.1^ENSG00000245651.3" ; ID "AC083805.1--TSFM^AC083805.1^ENSG00000245651.3" ; exon_id "ENSE00001961223.2" ; exon_number 1 ; gene_id "AC083805.1--TSFM^AC083805.1^ENSG00000245651.3" ; gene_name "AC083805.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000170485.11" ; havana_transcript "OTTHUMT00000409363.1" ; level 2 ; orig_coord_info "chr12,57893740,57896482,-" ; tag basic ; transcript_id "AC083805.1--TSFM^ENST00000499481.2" ; transcript_name "AC083805.1-202" ; transcript_support_level 1 ; transcript_type lncRNA
AC083805.1--TSFM HAVANA RNA 1001 10858 . + . FI_gene_label "AC083805.1^ENSG00000245651.3" ; ID "AC083805.1--TSFM^ENST00000499481.2" ; Parent "AC083805.1--TSFM^AC083805.1^ENSG00000245651.3" ; exon_id "ENSE00001961223.2" ; exon_number 1 ; gene_id "AC083805.1--TSFM^AC083805.1^ENSG00000245651.3" ; gene_name "AC083805.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000170485.11" ; havana_transcript "OTTHUMT00000409363.1" ; level 2 ; orig_coord_info "chr12,57893740,57896482,-" ; tag basic ; transcript_id "AC083805.1--TSFM^ENST00000499481.2" ; transcript_name "AC083805.1-202" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
AC090615.1--AC092447.2 HAVANA gene 5370 6322 . + . FI_gene_label "AC092447.2^ENSG00000213650.3" ; ID "AC090615.1--AC092447.2^AC092447.2^ENSG00000213650.3" ; exon_id "ENSE00001740400.1" ; exon_number 1 ; gene_id "AC090615.1--AC092447.2^AC092447.2^ENSG00000213650.3" ; gene_name "AC092447.2" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000156297.1" ; havana_transcript "OTTHUMT00000343759.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr7,56568385,56568858,-" ; tag pseudo_consens basic ; transcript_id "AC090615.1--AC092447.2^ENST00000435487.1" ; transcript_name "AC092447.2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
AC090615.1--AC092447.2 HAVANA RNA 5370 6322 . + . FI_gene_label "AC092447.2^ENSG00000213650.3" ; ID "AC090615.1--AC092447.2^ENST00000435487.1" ; Parent "AC090615.1--AC092447.2^AC092447.2^ENSG00000213650.3" ; exon_id "ENSE00001740400.1" ; exon_number 1 ; gene_id "AC090615.1--AC092447.2^AC092447.2^ENSG00000213650.3" ; gene_name "AC092447.2" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000156297.1" ; havana_transcript "OTTHUMT00000343759.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr7,56568385,56568858,-" ; tag pseudo_consens basic ; transcript_id "AC090615.1--AC092447.2^ENST00000435487.1" ; transcript_name "AC092447.2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
AC090615.1--AC092447.2 HAVANA gene 1001 2369 . + . FI_gene_label "AC090615.1^ENSG00000266356.1" ; ID "AC090615.1--AC092447.2^AC090615.1^ENSG00000266356.1" ; exon_id "ENSE00002707913.1" ; exon_number 1 ; gene_id "AC090615.1--AC092447.2^AC090615.1^ENSG00000266356.1" ; gene_name "AC090615.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000179155.1" ; havana_transcript "OTTHUMT00000445015.1" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chr17,27412706,27412806,-" ; tag pseudo_consens basic ; transcript_id "AC090615.1--AC092447.2^ENST00000577519.1" ; transcript_name "AC090615.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
AC090615.1--AC092447.2 HAVANA RNA 1001 2369 . + . FI_gene_label "AC090615.1^ENSG00000266356.1" ; ID "AC090615.1--AC092447.2^ENST00000577519.1" ; Parent "AC090615.1--AC092447.2^AC090615.1^ENSG00000266356.1" ; exon_id "ENSE00002707913.1" ; exon_number 1 ; gene_id "AC090615.1--AC092447.2^AC090615.1^ENSG00000266356.1" ; gene_name "AC090615.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000179155.1" ; havana_transcript "OTTHUMT00000445015.1" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chr17,27412706,27412806,-" ; tag pseudo_consens basic ; transcript_id "AC090615.1--AC092447.2^ENST00000577519.1" ; transcript_name "AC090615.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
CCNY--AL353600.1 HAVANA gene 27174 27424 . + . FI_gene_label "AL353600.1^ENSG00000273012.1" ; ID "CCNY--AL353600.1^AL353600.1^ENSG00000273012.1" ; exon_id "ENSE00003710377.1" ; exon_number 1 ; gene_id "CCNY--AL353600.1^AL353600.1^ENSG00000273012.1" ; gene_name "AL353600.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000186206.1" ; havana_transcript "OTTHUMT00000472416.1" ; level 2 ; orig_coord_info "chr10,33341655,33341905,+" ; tag basic ; transcript_id "CCNY--AL353600.1^ENST00000608148.1" ; transcript_name "AL353600.1-201" ; transcript_support_level NA ; transcript_type lncRNA
CCNY--AL353600.1 HAVANA RNA 27174 27424 . + . FI_gene_label "AL353600.1^ENSG00000273012.1" ; ID "CCNY--AL353600.1^ENST00000608148.1" ; Parent "CCNY--AL353600.1^AL353600.1^ENSG00000273012.1" ; exon_id "ENSE00003710377.1" ; exon_number 1 ; gene_id "CCNY--AL353600.1^AL353600.1^ENSG00000273012.1" ; gene_name "AL353600.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000186206.1" ; havana_transcript "OTTHUMT00000472416.1" ; level 2 ; orig_coord_info "chr10,33341655,33341905,+" ; tag basic ; transcript_id "CCNY--AL353600.1^ENST00000608148.1" ; transcript_name "AL353600.1-201" ; transcript_support_level NA ; transcript_type lncRNA
L1 and L2 created:
CCNY--AL353600.2 HAVANA gene 27174 30614 . + . FI_gene_label "AL353600.2^ENSG00000287278.1" ; ID "CCNY--AL353600.2^AL353600.2^ENSG00000287278.1" ; exon_id "ENSE00003868179.1" ; exon_number 1 ; gene_id "CCNY--AL353600.2^AL353600.2^ENSG00000287278.1" ; gene_name "AL353600.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194969.1" ; havana_transcript "OTTHUMT00000523464.1" ; level 2 ; orig_coord_info "chr10,33384891,33385325,+" ; tag basic TAGENE ; transcript_id "CCNY--AL353600.2^ENST00000654047.1" ; transcript_name "AL353600.2-201" ; transcript_type lncRNA
CCNY--AL353600.2 HAVANA RNA 27174 30614 . + . FI_gene_label "AL353600.2^ENSG00000287278.1" ; ID "CCNY--AL353600.2^ENST00000654047.1" ; Parent "CCNY--AL353600.2^AL353600.2^ENSG00000287278.1" ; exon_id "ENSE00003868179.1" ; exon_number 1 ; gene_id "CCNY--AL353600.2^AL353600.2^ENSG00000287278.1" ; gene_name "AL353600.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194969.1" ; havana_transcript "OTTHUMT00000523464.1" ; level 2 ; orig_coord_info "chr10,33384891,33385325,+" ; tag basic TAGENE ; transcript_id "CCNY--AL353600.2^ENST00000654047.1" ; transcript_name "AL353600.2-201" ; transcript_type lncRNA
L1 and L2 created:
MARCHF9--AC023141.7 HAVANA gene 9267 11673 . + . FI_gene_label "AC023141.7^ENSG00000231484.1" ; ID "MARCHF9--AC023141.7^AC023141.7^ENSG00000231484.1" ; exon_id "ENSE00002519680.1" ; exon_number 1 ; gene_id "MARCHF9--AC023141.7^AC023141.7^ENSG00000231484.1" ; gene_name "AC023141.7" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000156088.1" ; havana_transcript "OTTHUMT00000342994.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,57828331,57828430,+" ; tag basic ; transcript_id "MARCHF9--AC023141.7^ENST00000430646.1" ; transcript_name "AC023141.7-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
MARCHF9--AC023141.7 HAVANA RNA 9267 11673 . + . FI_gene_label "AC023141.7^ENSG00000231484.1" ; ID "MARCHF9--AC023141.7^ENST00000430646.1" ; Parent "MARCHF9--AC023141.7^AC023141.7^ENSG00000231484.1" ; exon_id "ENSE00002519680.1" ; exon_number 1 ; gene_id "MARCHF9--AC023141.7^AC023141.7^ENSG00000231484.1" ; gene_name "AC023141.7" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000156088.1" ; havana_transcript "OTTHUMT00000342994.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,57828331,57828430,+" ; tag basic ; transcript_id "MARCHF9--AC023141.7^ENST00000430646.1" ; transcript_name "AC023141.7-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
MARCHF9--AC128676.1 HAVANA gene 9267 9584 . + . FI_gene_label "AC128676.1^ENSG00000233918.1" ; ID "MARCHF9--AC128676.1^AC128676.1^ENSG00000233918.1" ; exon_id "ENSE00001769153.1" ; exon_number 1 ; gene_id "MARCHF9--AC128676.1^AC128676.1^ENSG00000233918.1" ; gene_name "AC128676.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000156204.2" ; havana_transcript "OTTHUMT00000343459.2" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr7,62275361,62275678,-" ; tag basic ; transcript_id "MARCHF9--AC128676.1^ENST00000454392.1" ; transcript_name "AC128676.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
MARCHF9--AC128676.1 HAVANA RNA 9267 9584 . + . FI_gene_label "AC128676.1^ENSG00000233918.1" ; ID "MARCHF9--AC128676.1^ENST00000454392.1" ; Parent "MARCHF9--AC128676.1^AC128676.1^ENSG00000233918.1" ; exon_id "ENSE00001769153.1" ; exon_number 1 ; gene_id "MARCHF9--AC128676.1^AC128676.1^ENSG00000233918.1" ; gene_name "AC128676.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000156204.2" ; havana_transcript "OTTHUMT00000343459.2" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr7,62275361,62275678,-" ; tag basic ; transcript_id "MARCHF9--AC128676.1^ENST00000454392.1" ; transcript_name "AC128676.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
NCOA4--GLUD1P2 HAVANA gene 20911 23111 . + . FI_gene_label "GLUD1P2^ENSG00000265366.6" ; ID "NCOA4--GLUD1P2^GLUD1P2^ENSG00000265366.6" ; exon_id "ENSE00003213807.1" ; exon_number 1 ; gene_id "NCOA4--GLUD1P2^GLUD1P2^ENSG00000265366.6" ; gene_name GLUD1P2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018100.3" ; havana_transcript "OTTHUMT00000047824.2" ; hgnc_id "HGNC:4337" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,46776753,46776833,-" ; tag pseudo_consens basic ; transcript_id "NCOA4--GLUD1P2^ENST00000583339.3" ; transcript_name "GLUD1P2-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
NCOA4--GLUD1P2 HAVANA RNA 20911 23111 . + . FI_gene_label "GLUD1P2^ENSG00000265366.6" ; ID "NCOA4--GLUD1P2^ENST00000583339.3" ; Parent "NCOA4--GLUD1P2^GLUD1P2^ENSG00000265366.6" ; exon_id "ENSE00003213807.1" ; exon_number 1 ; gene_id "NCOA4--GLUD1P2^GLUD1P2^ENSG00000265366.6" ; gene_name GLUD1P2 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018100.3" ; havana_transcript "OTTHUMT00000047824.2" ; hgnc_id "HGNC:4337" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,46776753,46776833,-" ; tag pseudo_consens basic ; transcript_id "NCOA4--GLUD1P2^ENST00000583339.3" ; transcript_name "GLUD1P2-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
TMEM243--AC020637.1 HAVANA gene 11879 19800 . + . FI_gene_label "AC020637.1^ENSG00000258231.5" ; ID "TMEM243--AC020637.1^AC020637.1^ENSG00000258231.5" ; exon_id "ENSE00002337014.1" ; exon_number 1 ; gene_id "TMEM243--AC020637.1^AC020637.1^ENSG00000258231.5" ; gene_name "AC020637.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169963.2" ; havana_transcript "OTTHUMT00000406685.1" ; level 1 ; orig_coord_info "chr12,58544124,58544179,+" ; tag basic exp_conf ; transcript_id "TMEM243--AC020637.1^ENST00000546977.5" ; transcript_name "AC020637.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TMEM243--AC020637.1 HAVANA RNA 11879 19800 . + . FI_gene_label "AC020637.1^ENSG00000258231.5" ; ID "TMEM243--AC020637.1^ENST00000546977.5" ; Parent "TMEM243--AC020637.1^AC020637.1^ENSG00000258231.5" ; exon_id "ENSE00002337014.1" ; exon_number 1 ; gene_id "TMEM243--AC020637.1^AC020637.1^ENSG00000258231.5" ; gene_name "AC020637.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000169963.2" ; havana_transcript "OTTHUMT00000406685.1" ; level 1 ; orig_coord_info "chr12,58544124,58544179,+" ; tag basic exp_conf ; transcript_id "TMEM243--AC020637.1^ENST00000546977.5" ; transcript_name "AC020637.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
568 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1002 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 1 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 68 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed