File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/1d240687c0fcc10395485d5ad93b23/.command.out
Size
1.2 KB
Attempt
KmerStream::KmerStream(): Start computing k-mer cardinality estimations (1/2)
KmerStream::KmerStream(): Start computing k-mer cardinality estimations (1/2)
KmerStream::KmerStream(): Finished
CompactedDBG::build(): Estimated number of k-mers occurring at least once: 112003378
CompactedDBG::build(): Estimated number of minimizer occurring at least once: 27349942
CompactedDBG::filter(): Processed 329784767 k-mers in 194360 reads
CompactedDBG::filter(): Found 111936016 unique k-mers
CompactedDBG::filter(): Number of blocks in Bloom filter is 765650
CompactedDBG::construct(): Extract approximate unitigs (1/2)
CompactedDBG::construct(): Extract approximate unitigs (2/2)
CompactedDBG::construct(): Closed all input files

CompactedDBG::construct(): Splitting unitigs (1/2)

CompactedDBG::construct(): Splitting unitigs (2/2)
CompactedDBG::construct(): Before split: 1041334 unitigs
CompactedDBG::construct(): After split (1/1): 1041334 unitigs
CompactedDBG::construct(): Unitigs split: 1721
CompactedDBG::construct(): Unitigs deleted: 0

CompactedDBG::construct(): Joining unitigs
CompactedDBG::construct(): After join: 983294 unitigs
CompactedDBG::construct(): Joined 58441 unitigs