Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 2677
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 2677
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:2677
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 1 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC015911.9--SLFN12L HAVANA mRNA 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^ENST00000260908.12" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ETV6--NTRK3 HAVANA gene 13392 15151 . + . FI_gene_label "ETV6^ENSG00000139083.11" ; ID "ETV6--NTRK3^ETV6^ENSG00000139083.11" ; exon_id "ENSE00002245284.1" ; exon_number 1 ; gene_id "ETV6--NTRK3^ETV6^ENSG00000139083.11" ; gene_name ETV6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168538.3" ; havana_transcript "OTTHUMT00000400134.1" ; hgnc_id "HGNC:3495" ; level 2 ; orig_coord_info "chr12,11885937,11886026,+" ; protein_id "ENSP00000266427.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "ETV6--NTRK3^ENST00000266427.3" ; transcript_name "ETV6-201" ; transcript_support_level 3 ; transcript_type protein_coding
ETV6--NTRK3 HAVANA mRNA 13392 15151 . + . FI_gene_label "ETV6^ENSG00000139083.11" ; ID "ETV6--NTRK3^ENST00000266427.3" ; Parent "ETV6--NTRK3^ETV6^ENSG00000139083.11" ; exon_id "ENSE00002245284.1" ; exon_number 1 ; gene_id "ETV6--NTRK3^ETV6^ENSG00000139083.11" ; gene_name ETV6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168538.3" ; havana_transcript "OTTHUMT00000400134.1" ; hgnc_id "HGNC:3495" ; level 2 ; orig_coord_info "chr12,11885937,11886026,+" ; protein_id "ENSP00000266427.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "ETV6--NTRK3^ENST00000266427.3" ; transcript_name "ETV6-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
ETV6--NTRK3 HAVANA gene 22528 45237 . + . FI_gene_label "NTRK3^ENSG00000140538.16" ; ID "ETV6--NTRK3^NTRK3^ENSG00000140538.16" ; ccdsid "CCDS32323.1" ; exon_id "ENSE00002296343.1" ; exon_number 1 ; gene_id "ETV6--NTRK3^NTRK3^ENSG00000140538.16" ; gene_name NTRK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000148677.12" ; havana_transcript "OTTHUMT00000403049.3" ; hgnc_id "HGNC:8033" ; level 2 ; orig_coord_info "chr15,88255906,88256153,-" ; protein_id "ENSP00000318328.3" ; tag basic CCDS ; transcript_id "ETV6--NTRK3^ENST00000317501.7" ; transcript_name "NTRK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
ETV6--NTRK3 HAVANA mRNA 22528 45237 . + . FI_gene_label "NTRK3^ENSG00000140538.16" ; ID "ETV6--NTRK3^ENST00000317501.7" ; Parent "ETV6--NTRK3^NTRK3^ENSG00000140538.16" ; ccdsid "CCDS32323.1" ; exon_id "ENSE00002296343.1" ; exon_number 1 ; gene_id "ETV6--NTRK3^NTRK3^ENSG00000140538.16" ; gene_name NTRK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000148677.12" ; havana_transcript "OTTHUMT00000403049.3" ; hgnc_id "HGNC:8033" ; level 2 ; orig_coord_info "chr15,88255906,88256153,-" ; protein_id "ENSP00000318328.3" ; tag basic CCDS ; transcript_id "ETV6--NTRK3^ENST00000317501.7" ; transcript_name "NTRK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IFT22--ZNF682 HAVANA gene 1012 9966 . + . FI_gene_label "IFT22^ENSG00000128581.17" ; ID "IFT22--ZNF682^IFT22^ENSG00000128581.17" ; ccdsid "CCDS5719.1" ; exon_id "ENSE00001909958.2" ; exon_number 1 ; gene_id "IFT22--ZNF682^IFT22^ENSG00000128581.17" ; gene_name IFT22 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157136.4" ; havana_transcript "OTTHUMT00000347565.3" ; hgnc_id "HGNC:21895" ; level 2 ; orig_coord_info "chr7,101321671,101321709,-" ; protein_id "ENSP00000320359.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IFT22--ZNF682^ENST00000315322.10" ; transcript_name "IFT22-201" ; transcript_support_level 1 ; transcript_type protein_coding
IFT22--ZNF682 HAVANA mRNA 1012 9966 . + . FI_gene_label "IFT22^ENSG00000128581.17" ; ID "IFT22--ZNF682^ENST00000315322.10" ; Parent "IFT22--ZNF682^IFT22^ENSG00000128581.17" ; ccdsid "CCDS5719.1" ; exon_id "ENSE00001909958.2" ; exon_number 1 ; gene_id "IFT22--ZNF682^IFT22^ENSG00000128581.17" ; gene_name IFT22 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157136.4" ; havana_transcript "OTTHUMT00000347565.3" ; hgnc_id "HGNC:21895" ; level 2 ; orig_coord_info "chr7,101321671,101321709,-" ; protein_id "ENSP00000320359.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "IFT22--ZNF682^ENST00000315322.10" ; transcript_name "IFT22-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IFT22--ZNF682 HAVANA gene 13267 22161 . + . FI_gene_label "ZNF682^ENSG00000197124.12" ; ID "IFT22--ZNF682^ZNF682^ENSG00000197124.12" ; ccdsid "CCDS42534.1" ; exon_id "ENSE00003635161.1" ; exon_number 4 ; gene_id "IFT22--ZNF682^ZNF682^ENSG00000197124.12" ; gene_name ZNF682 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182650.3" ; havana_transcript "OTTHUMT00000462892.1" ; hgnc_id "HGNC:28857" ; level 2 ; orig_coord_info "chr19,20024250,20024283,-" ; protein_id "ENSP00000351324.5" ; tag basic CCDS ; transcript_id "IFT22--ZNF682^ENST00000358523.9" ; transcript_name "ZNF682-201" ; transcript_support_level 2 ; transcript_type protein_coding
IFT22--ZNF682 HAVANA mRNA 13267 22161 . + . FI_gene_label "ZNF682^ENSG00000197124.12" ; ID "IFT22--ZNF682^ENST00000358523.9" ; Parent "IFT22--ZNF682^ZNF682^ENSG00000197124.12" ; ccdsid "CCDS42534.1" ; exon_id "ENSE00003635161.1" ; exon_number 4 ; gene_id "IFT22--ZNF682^ZNF682^ENSG00000197124.12" ; gene_name ZNF682 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182650.3" ; havana_transcript "OTTHUMT00000462892.1" ; hgnc_id "HGNC:28857" ; level 2 ; orig_coord_info "chr19,20024250,20024283,-" ; protein_id "ENSP00000351324.5" ; tag basic CCDS ; transcript_id "IFT22--ZNF682^ENST00000358523.9" ; transcript_name "ZNF682-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MET--RNA5-8SP6 HAVANA gene 1001 27300 . + . FI_gene_label "MET^ENSG00000105976.16" ; ID "MET--RNA5-8SP6^MET^ENSG00000105976.16" ; ccdsid "CCDS47689.1" ; exon_id "ENSE00001238915.3" ; exon_number 2 ; gene_id "MET--RNA5-8SP6^MET^ENSG00000105976.16" ; gene_name MET ; gene_type protein_coding ; havana_gene "OTTHUMG00000023299.10" ; havana_transcript "OTTHUMT00000059620.4" ; hgnc_id "HGNC:7029" ; level 2 ; orig_coord_info "chr7,116699085,116700284,+" ; protein_id "ENSP00000317272.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "MET--RNA5-8SP6^ENST00000318493.11" ; transcript_name "MET-201" ; transcript_support_level 1 ; transcript_type protein_coding
MET--RNA5-8SP6 HAVANA mRNA 1001 27300 . + . FI_gene_label "MET^ENSG00000105976.16" ; ID "MET--RNA5-8SP6^ENST00000318493.11" ; Parent "MET--RNA5-8SP6^MET^ENSG00000105976.16" ; ccdsid "CCDS47689.1" ; exon_id "ENSE00001238915.3" ; exon_number 2 ; gene_id "MET--RNA5-8SP6^MET^ENSG00000105976.16" ; gene_name MET ; gene_type protein_coding ; havana_gene "OTTHUMG00000023299.10" ; havana_transcript "OTTHUMT00000059620.4" ; hgnc_id "HGNC:7029" ; level 2 ; orig_coord_info "chr7,116699085,116700284,+" ; protein_id "ENSP00000317272.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "MET--RNA5-8SP6^ENST00000318493.11" ; transcript_name "MET-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NTRK3--ETV6 HAVANA gene 70980 72739 . + . FI_gene_label "ETV6^ENSG00000139083.11" ; ID "NTRK3--ETV6^ETV6^ENSG00000139083.11" ; exon_id "ENSE00002245284.1" ; exon_number 1 ; gene_id "NTRK3--ETV6^ETV6^ENSG00000139083.11" ; gene_name ETV6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168538.3" ; havana_transcript "OTTHUMT00000400134.1" ; hgnc_id "HGNC:3495" ; level 2 ; orig_coord_info "chr12,11885937,11886026,+" ; protein_id "ENSP00000266427.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "NTRK3--ETV6^ENST00000266427.3" ; transcript_name "ETV6-201" ; transcript_support_level 3 ; transcript_type protein_coding
NTRK3--ETV6 HAVANA mRNA 70980 72739 . + . FI_gene_label "ETV6^ENSG00000139083.11" ; ID "NTRK3--ETV6^ENST00000266427.3" ; Parent "NTRK3--ETV6^ETV6^ENSG00000139083.11" ; exon_id "ENSE00002245284.1" ; exon_number 1 ; gene_id "NTRK3--ETV6^ETV6^ENSG00000139083.11" ; gene_name ETV6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168538.3" ; havana_transcript "OTTHUMT00000400134.1" ; hgnc_id "HGNC:3495" ; level 2 ; orig_coord_info "chr12,11885937,11886026,+" ; protein_id "ENSP00000266427.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "NTRK3--ETV6^ENST00000266427.3" ; transcript_name "ETV6-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
NTRK3--ETV6 HAVANA gene 1610 24319 . + . FI_gene_label "NTRK3^ENSG00000140538.16" ; ID "NTRK3--ETV6^NTRK3^ENSG00000140538.16" ; ccdsid "CCDS32323.1" ; exon_id "ENSE00002296343.1" ; exon_number 1 ; gene_id "NTRK3--ETV6^NTRK3^ENSG00000140538.16" ; gene_name NTRK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000148677.12" ; havana_transcript "OTTHUMT00000403049.3" ; hgnc_id "HGNC:8033" ; level 2 ; orig_coord_info "chr15,88255906,88256153,-" ; protein_id "ENSP00000318328.3" ; tag basic CCDS ; transcript_id "NTRK3--ETV6^ENST00000317501.7" ; transcript_name "NTRK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
NTRK3--ETV6 HAVANA mRNA 1610 24319 . + . FI_gene_label "NTRK3^ENSG00000140538.16" ; ID "NTRK3--ETV6^ENST00000317501.7" ; Parent "NTRK3--ETV6^NTRK3^ENSG00000140538.16" ; ccdsid "CCDS32323.1" ; exon_id "ENSE00002296343.1" ; exon_number 1 ; gene_id "NTRK3--ETV6^NTRK3^ENSG00000140538.16" ; gene_name NTRK3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000148677.12" ; havana_transcript "OTTHUMT00000403049.3" ; hgnc_id "HGNC:8033" ; level 2 ; orig_coord_info "chr15,88255906,88256153,-" ; protein_id "ENSP00000318328.3" ; tag basic CCDS ; transcript_id "NTRK3--ETV6^ENST00000317501.7" ; transcript_name "NTRK3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 16359 24799 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA10--PCDHA13^ENST00000289272.3" ; Parent "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHA13 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHA13 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHA13^ENST00000562220.2" ; Parent "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHA13^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHA13^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 16359 26374 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA10--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC1 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC1 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC1^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC1^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC1^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 16365 27100 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA10--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA10--PCDHAC2 HAVANA gene 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA10--PCDHAC2 HAVANA mRNA 1001 13358 . + . FI_gene_label "PCDHA10^ENSG00000250120.8" ; ID "PCDHA10--PCDHAC2^ENST00000562220.2" ; Parent "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; ccdsid "CCDS75325.1" ; exon_id "ENSE00002616704.2" ; exon_number 1 ; gene_id "PCDHA10--PCDHAC2^PCDHA10^ENSG00000250120.8" ; gene_name PCDHA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163372.5" ; havana_transcript "OTTHUMT00000477562.1" ; hgnc_id "HGNC:8664" ; level 2 ; orig_coord_info "chr5,140856049,140858580,+" ; protein_id "ENSP00000478748.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHA10--PCDHAC2^ENST00000562220.2" ; transcript_name "PCDHA10-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^ENST00000289272.3" ; Parent "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^ENST00000378126.4" ; Parent "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA10 HAVANA gene 6885 16338 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA10 HAVANA mRNA 6885 16338 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA3--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA10 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA10 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA10^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA10^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA10^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA11 HAVANA gene 6700 15505 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA11 HAVANA mRNA 6700 15505 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA3--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA11 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA11 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA11^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA11^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA11^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA12 HAVANA gene 6696 14588 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA12 HAVANA mRNA 6696 14588 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA3--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA12 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA12 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA12^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA12^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA12^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA8 HAVANA gene 9172 18352 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA8 HAVANA mRNA 9172 18352 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA3--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA8 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA8 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA8^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA8^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA8^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA9 HAVANA gene 6717 14444 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGA9 HAVANA mRNA 6717 14444 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA3--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGA9 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGA9 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGA9^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGA9^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGA9^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB6 HAVANA gene 6878 16477 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGB6 HAVANA mRNA 6878 16477 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA3--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB6 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGB6 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB6^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB6^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB6^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB7 HAVANA gene 6728 14657 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGB7 HAVANA mRNA 6728 14657 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA3--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGB7 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGB7 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGB7^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGB7^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGB7^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC3 HAVANA gene 6715 16901 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGC3 HAVANA mRNA 6715 16901 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA3--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC3 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGC3 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC3^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC3^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC3^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC4 HAVANA gene 6873 14669 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGC4 HAVANA mRNA 6873 14669 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA3--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC4 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGC4 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC4^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC4^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC4^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC5 HAVANA gene 6696 14721 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA3--PCDHGC5 HAVANA mRNA 6696 14721 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA3--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA3--PCDHGC5 HAVANA gene 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA3--PCDHGC5 HAVANA mRNA 1001 3695 . + . FI_gene_label "PCDHGA3^ENSG00000254245.3" ; ID "PCDHGA3--PCDHGC5^ENST00000619750.1" ; Parent "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; ccdsid "CCDS75329.1" ; exon_id "ENSE00003734988.1" ; exon_number 1 ; gene_id "PCDHGA3--PCDHGC5^PCDHGA3^ENSG00000254245.3" ; gene_name PCDHGA3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163680.4" ; havana_transcript "OTTHUMT00000377016.3" ; hgnc_id "HGNC:8701" ; level 2 ; orig_coord_info "chr5,141344034,141346520,+" ; protein_id "ENSP00000479265.1" ; tag basic CCDS ; transcript_id "PCDHGA3--PCDHGC5^ENST00000619750.1" ; transcript_name "PCDHGA3-203" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
VLDLR-AS1--SLC4A5 ENSEMBL gene 32260 66063 . + . FI_gene_label "SLC4A5^ENSG00000188687.17" ; ID "VLDLR-AS1--SLC4A5^SLC4A5^ENSG00000188687.17" ; ccdsid "CCDS1936.1" ; exon_id "ENSE00003621581.1" ; exon_number 3 ; gene_id "VLDLR-AS1--SLC4A5^SLC4A5^ENSG00000188687.17" ; gene_name SLC4A5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090263.7" ; hgnc_id "HGNC:18168" ; level 3 ; orig_coord_info "chr2,74314945,74315023,-" ; protein_id "ENSP00000251768.7" ; tag basic CCDS ; transcript_id "VLDLR-AS1--SLC4A5^ENST00000346834.8" ; transcript_name "SLC4A5-201" ; transcript_support_level 5 ; transcript_type protein_coding
VLDLR-AS1--SLC4A5 ENSEMBL mRNA 32260 66063 . + . FI_gene_label "SLC4A5^ENSG00000188687.17" ; ID "VLDLR-AS1--SLC4A5^ENST00000346834.8" ; Parent "VLDLR-AS1--SLC4A5^SLC4A5^ENSG00000188687.17" ; ccdsid "CCDS1936.1" ; exon_id "ENSE00003621581.1" ; exon_number 3 ; gene_id "VLDLR-AS1--SLC4A5^SLC4A5^ENSG00000188687.17" ; gene_name SLC4A5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090263.7" ; hgnc_id "HGNC:18168" ; level 3 ; orig_coord_info "chr2,74314945,74315023,-" ; protein_id "ENSP00000251768.7" ; tag basic CCDS ; transcript_id "VLDLR-AS1--SLC4A5^ENST00000346834.8" ; transcript_name "SLC4A5-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
AC015911.9--SLFN12L HAVANA RNA 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^ENST00000650652.2" ; Parent "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC015911.9--SLFN12L ENSEMBL gene 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
AC015911.9--SLFN12L ENSEMBL RNA 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^ENST00000675965.1" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
L1 and L2 created:
BMS1P7--AGAP13P HAVANA gene 10576 13938 . + . FI_gene_label "AGAP13P^ENSG00000243289.1" ; ID "BMS1P7--AGAP13P^AGAP13P^ENSG00000243289.1" ; exon_id "ENSE00002475142.1" ; exon_number 1 ; gene_id "BMS1P7--AGAP13P^AGAP13P^ENSG00000243289.1" ; gene_name AGAP13P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000018095.2" ; havana_transcript "OTTHUMT00000047819.2" ; hgnc_id "HGNC:23499" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr10,46816516,46816738,+" ; tag basic ; transcript_id "BMS1P7--AGAP13P^ENST00000417888.1" ; transcript_name "AGAP13P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
BMS1P7--AGAP13P HAVANA RNA 10576 13938 . + . FI_gene_label "AGAP13P^ENSG00000243289.1" ; ID "BMS1P7--AGAP13P^ENST00000417888.1" ; Parent "BMS1P7--AGAP13P^AGAP13P^ENSG00000243289.1" ; exon_id "ENSE00002475142.1" ; exon_number 1 ; gene_id "BMS1P7--AGAP13P^AGAP13P^ENSG00000243289.1" ; gene_name AGAP13P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000018095.2" ; havana_transcript "OTTHUMT00000047819.2" ; hgnc_id "HGNC:23499" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr10,46816516,46816738,+" ; tag basic ; transcript_id "BMS1P7--AGAP13P^ENST00000417888.1" ; transcript_name "AGAP13P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
BMS1P7--AGAP13P HAVANA gene 1001 7575 . + . FI_gene_label "BMS1P7^ENSG00000270025.2" ; ID "BMS1P7--AGAP13P^BMS1P7^ENSG00000270025.2" ; exon_id "ENSE00001675840.2" ; exon_number 1 ; gene_id "BMS1P7--AGAP13P^BMS1P7^ENSG00000270025.2" ; gene_name BMS1P7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018163.3" ; havana_transcript "OTTHUMT00000047911.2" ; hgnc_id "HGNC:23655" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48059827,48060016,-" ; tag basic ; transcript_id "BMS1P7--AGAP13P^ENST00000602440.2" ; transcript_name "BMS1P7-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
BMS1P7--AGAP13P HAVANA RNA 1001 7575 . + . FI_gene_label "BMS1P7^ENSG00000270025.2" ; ID "BMS1P7--AGAP13P^ENST00000602440.2" ; Parent "BMS1P7--AGAP13P^BMS1P7^ENSG00000270025.2" ; exon_id "ENSE00001675840.2" ; exon_number 1 ; gene_id "BMS1P7--AGAP13P^BMS1P7^ENSG00000270025.2" ; gene_name BMS1P7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018163.3" ; havana_transcript "OTTHUMT00000047911.2" ; hgnc_id "HGNC:23655" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48059827,48060016,-" ; tag basic ; transcript_id "BMS1P7--AGAP13P^ENST00000602440.2" ; transcript_name "BMS1P7-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
MET--RNA5-8SP6 ENSEMBL gene 30301 30452 . + . FI_gene_label "RNA5-8SP6^ENSG00000251705.1" ; ID "MET--RNA5-8SP6^RNA5-8SP6^ENSG00000251705.1" ; exon_id "ENSE00002088173.1" ; exon_number 1 ; gene_id "MET--RNA5-8SP6^RNA5-8SP6^ENSG00000251705.1" ; gene_name "RNA5-8SP6" ; gene_type rRNA_pseudogene ; hgnc_id "HGNC:41960" ; level 3 ; orig_coord_info "chrY,10200155,10200306,+" ; tag basic ; transcript_id "MET--RNA5-8SP6^ENST00000515896.1" ; transcript_name "RNA5-8SP6-201" ; transcript_support_level NA ; transcript_type rRNA_pseudogene
MET--RNA5-8SP6 ENSEMBL RNA 30301 30452 . + . FI_gene_label "RNA5-8SP6^ENSG00000251705.1" ; ID "MET--RNA5-8SP6^ENST00000515896.1" ; Parent "MET--RNA5-8SP6^RNA5-8SP6^ENSG00000251705.1" ; exon_id "ENSE00002088173.1" ; exon_number 1 ; gene_id "MET--RNA5-8SP6^RNA5-8SP6^ENSG00000251705.1" ; gene_name "RNA5-8SP6" ; gene_type rRNA_pseudogene ; hgnc_id "HGNC:41960" ; level 3 ; orig_coord_info "chrY,10200155,10200306,+" ; tag basic ; transcript_id "MET--RNA5-8SP6^ENST00000515896.1" ; transcript_name "RNA5-8SP6-201" ; transcript_support_level NA ; transcript_type rRNA_pseudogene
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
VLDLR-AS1--SLC4A5 HAVANA gene 6611 24339 . + . FI_gene_label "VLDLR-AS1^ENSG00000236404.10" ; ID "VLDLR-AS1--SLC4A5^VLDLR-AS1^ENSG00000236404.10" ; exon_id "ENSE00001691185.1" ; exon_number 1 ; gene_id "VLDLR-AS1--SLC4A5^VLDLR-AS1^ENSG00000236404.10" ; gene_name "VLDLR-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000019448.5" ; havana_transcript "OTTHUMT00000051524.2" ; hgnc_id "HGNC:49621" ; level 2 ; orig_coord_info "chr9,2621229,2621413,-" ; transcript_id "VLDLR-AS1--SLC4A5^ENST00000416826.6" ; transcript_name "VLDLR-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
VLDLR-AS1--SLC4A5 HAVANA RNA 6611 24339 . + . FI_gene_label "VLDLR-AS1^ENSG00000236404.10" ; ID "VLDLR-AS1--SLC4A5^ENST00000416826.6" ; Parent "VLDLR-AS1--SLC4A5^VLDLR-AS1^ENSG00000236404.10" ; exon_id "ENSE00001691185.1" ; exon_number 1 ; gene_id "VLDLR-AS1--SLC4A5^VLDLR-AS1^ENSG00000236404.10" ; gene_name "VLDLR-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000019448.5" ; havana_transcript "OTTHUMT00000051524.2" ; hgnc_id "HGNC:49621" ; level 2 ; orig_coord_info "chr9,2621229,2621413,-" ; transcript_id "VLDLR-AS1--SLC4A5^ENST00000416826.6" ; transcript_name "VLDLR-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
265 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
450 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 31 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 0 second) ------
GFF3 file parsed