Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/7be7ac61458a3565ce55cf45b48651/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/e4b6bb64305bfbe210bc6de3e33c24/659_bCu-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1a/7be7ac61458a3565ce55cf45b48651/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 252430839
unpaired = 4033378
MERGED PAIRED END READS = 252430839
MATES PROCESSED = 508895056
TOTAL READS     = 256464217
DISTINCT READS  = 6.32137e+07
DISTINCT COUNTS = 1065
MAX COUNT       = 815970
COUNTS OF 1     = 1.83383e+07
MAX TERMS       = 100
OBSERVED COUNTS (815971)
1	18338279
2	11857251
3	8942352
4	6578994
5	4714643
6	3322896
7	2330120
8	1641615
9	1172816
10	853408
11	631088
12	478834
13	370551
14	290444
15	232253
16	188038
17	154387
18	127354
19	106853
20	90501
21	76208
22	65444
23	56894
24	49329
25	43159
26	38042
27	33997
28	30491
29	26980
30	24465
31	21886
32	19602
33	18101
34	16484
35	15056
36	14041
37	12689
38	11833
39	10919
40	10199
41	9233
42	8726
43	8017
44	7418
45	7152
46	6682
47	6146
48	5739
49	5356
50	5083
51	4805
52	4570
53	4472
54	4105
55	3777
56	3649
57	3462
58	3242
59	3159
60	2935
61	2824
62	2693
63	2661
64	2473
65	2278
66	2251
67	2127
68	2046
69	1997
70	1829
71	1790
72	1641
73	1633
74	1631
75	1548
76	1429
77	1458
78	1343
79	1324
80	1297
81	1217
82	1193
83	1141
84	1036
85	997
86	948
87	936
88	913
89	923
90	874
91	873
92	820
93	836
94	771
95	753
96	742
97	696
98	708
99	684
100	612
101	604
102	568
103	605
104	551
105	594
106	539
107	553
108	498
109	528
110	439
111	503
112	480
113	424
114	397
115	433
116	414
117	392
118	385
119	385
120	415
121	324
122	337
123	338
124	312
125	299
126	340
127	312
128	283
129	306
130	290
131	274
132	293
133	306
134	255
135	275
136	265
137	256
138	245
139	274
140	249
141	233
142	217
143	228
144	222
145	219
146	221
147	193
148	213
149	211
150	218
151	195
152	159
153	172
154	192
155	185
156	187
157	146
158	171
159	150
160	156
161	145
162	150
163	137
164	147
165	149
166	153
167	133
168	128
169	132
170	130
171	127
172	125
173	135
174	109
175	122
176	122
177	123
178	104
179	109
180	102
181	131
182	114
183	104
184	123
185	83
186	102
187	100
188	101
189	99
190	90
191	79
192	98
193	87
194	71
195	75
196	73
197	85
198	75
199	88
200	79
201	68
202	81
203	76
204	88
205	79
206	57
207	82
208	76
209	62
210	71
211	76
212	63
213	70
214	64
215	62
216	74
217	65
218	48
219	64
220	51
221	68
222	65
223	67
224	60
225	44
226	54
227	44
228	50
229	51
230	54
231	43
232	54
233	47
234	50
235	44
236	44
237	50
238	50
239	41
240	38
241	47
242	56
243	47
244	46
245	46
246	54
247	38
248	44
249	45
250	41
251	37
252	46
253	42
254	36
255	42
256	36
257	35
258	36
259	37
260	34
261	44
262	28
263	33
264	33
265	31
266	36
267	22
268	21
269	31
270	24
271	42
272	27
273	27
274	31
275	32
276	27
277	30
278	29
279	23
280	33
281	32
282	27
283	24
284	19
285	28
286	31
287	30
288	30
289	31
290	23
291	33
292	30
293	26
294	30
295	30
296	13
297	29
298	23
299	23
300	17
301	24
302	20
303	24
304	30
305	19
306	20
307	18
308	27
309	19
310	21
311	27
312	20
313	18
314	18
315	14
316	23
317	27
318	22
319	24
320	18
321	24
322	20
323	16
324	19
325	20
326	20
327	23
328	13
329	20
330	9
331	18
332	15
333	23
334	9
335	17
336	17
337	17
338	17
339	13
340	14
341	17
342	12
343	20
344	14
345	17
346	11
347	17
348	16
349	20
350	16
351	13
352	15
353	19
354	15
355	14
356	15
357	14
358	15
359	17
360	16
361	8
362	14
363	18
364	11
365	9
366	13
367	17
368	11
369	13
370	11
371	14
372	10
373	18
374	9
375	11
376	10
377	8
378	11
379	11
380	12
381	15
382	8
383	5
384	8
385	6
386	8
387	12
388	10
389	10
390	9
391	6
392	12
393	6
394	6
395	9
396	9
397	9
398	5
399	10
400	13
401	11
402	9
403	8
404	11
405	10
406	11
407	8
408	11
409	14
410	13
411	11
412	8
413	13
414	10
415	11
416	9
417	10
418	8
419	8
420	6
421	3
422	8
423	6
424	3
425	10
426	13
427	6
428	9
429	6
430	9
431	5
432	8
433	12
434	4
435	4
436	2
437	10
438	3
439	7
440	4
441	7
442	6
443	7
444	6
445	7
446	5
447	11
448	10
449	6
450	6
451	8
452	12
453	8
454	3
455	11
456	3
457	7
458	7
459	6
460	4
461	3
462	3
463	7
464	9
465	3
466	5
467	9
468	4
469	8
470	8
471	8
472	9
473	6
474	8
475	6
476	9
477	6
478	8
479	7
480	5
481	8
482	3
483	4
484	8
485	3
486	7
487	6
488	5
489	14
490	8
491	5
492	3
493	3
494	5
495	9
496	3
497	9
498	6
499	6
500	3
501	5
502	5
503	9
505	5
506	4
507	5
508	4
509	1
510	2
512	4
513	4
514	6
515	5
516	7
517	2
518	5
519	6
520	7
521	1
522	2
523	4
524	5
525	4
526	4
527	4
528	1
529	7
530	1
531	3
532	4
533	2
534	3
535	3
536	5
537	3
538	8
539	7
540	5
541	1
542	4
543	2
544	3
545	1
546	4
547	3
548	7
549	1
550	4
551	4
552	4
553	4
554	5
555	1
556	1
557	2
558	4
559	5
560	4
561	2
562	3
563	5
564	5
565	3
566	7
567	4
568	3
569	4
570	2
571	4
572	3
573	6
574	3
575	4
576	2
577	2
578	4
579	1
580	3
581	4
582	1
583	1
584	4
585	5
586	1
587	1
588	5
589	5
590	2
591	1
592	2
593	2
594	2
595	1
596	1
597	3
598	2
599	4
600	4
601	2
602	3
603	2
604	1
605	1
606	2
607	3
608	1
609	2
610	1
611	2
612	5
613	1
614	3
615	2
616	2
617	2
618	2
619	1
620	5
621	1
622	2
623	1
624	1
626	1
627	5
628	3
629	3
630	3
631	1
632	2
633	4
634	1
635	3
636	3
637	3
638	2
639	3
640	1
641	6
642	3
643	3
644	1
645	3
646	2
648	2
649	1
650	5
651	2
652	4
653	5
654	1
655	6
656	2
657	3
658	4
659	2
660	4
661	2
662	1
664	1
665	2
666	1
667	2
668	4
669	5
670	2
671	1
672	1
673	1
674	2
675	1
676	2
677	2
678	3
679	1
680	4
681	1
682	4
683	1
684	2
685	4
686	2
688	1
690	2
691	2
692	2
693	5
694	3
695	3
696	2
697	3
698	1
699	1
700	3
701	2
703	1
704	1
705	3
707	1
709	2
710	1
711	2
712	1
713	1
714	1
715	3
716	2
717	1
718	3
719	3
720	2
721	3
722	4
723	1
724	3
725	1
726	1
727	1
728	1
731	2
732	3
733	1
735	2
738	1
739	1
740	1
741	3
742	2
743	3
744	4
745	1
746	1
747	4
748	1
749	2
751	1
752	1
753	1
754	1
755	3
758	1
760	1
761	3
763	3
764	1
766	1
767	2
769	1
770	1
771	3
773	1
774	3
776	1
777	1
778	2
779	1
780	4
781	3
782	1
783	2
786	1
787	1
789	1
790	1
791	1
792	1
793	2
794	2
795	2
797	1
801	1
803	3
804	1
806	1
807	1
810	2
811	2
812	2
814	1
815	1
817	3
818	1
820	3
822	1
823	1
824	2
825	2
826	2
828	3
829	5
830	1
832	1
833	1
834	1
836	1
838	2
840	1
844	1
845	1
846	2
848	1
849	1
852	1
853	2
854	1
856	1
858	2
860	1
861	1
863	1
864	1
866	1
867	2
869	1
872	2
875	1
876	2
877	1
878	2
879	1
880	2
881	1
882	1
884	1
885	2
887	2
888	2
890	3
892	2
893	1
894	1
895	1
896	1
899	1
900	2
901	1
903	1
904	1
905	1
906	5
907	1
909	1
912	1
913	1
914	2
916	1
917	4
918	1
920	2
921	1
922	2
926	1
927	1
931	1
933	1
934	1
936	1
937	1
938	2
940	1
942	1
944	1
945	1
946	3
951	2
953	2
957	1
958	2
963	2
964	1
969	1
970	1
971	1
972	1
974	1
980	1
982	1
985	1
987	1
988	1
989	1
993	1
994	1
999	3
1000	1
1002	1
1004	2
1006	2
1007	1
1008	1
1013	1
1014	1
1016	1
1017	1
1024	1
1028	1
1032	1
1034	1
1036	2
1039	3
1043	1
1050	1
1054	1
1055	1
1058	1
1060	1
1070	1
1071	1
1073	1
1075	1
1079	1
1080	1
1081	1
1082	1
1089	1
1090	1
1092	1
1095	1
1097	1
1101	1
1107	2
1108	1
1109	1
1114	1
1116	1
1129	1
1136	1
1137	1
1138	1
1146	2
1147	1
1148	1
1151	1
1152	1
1153	1
1154	1
1156	1
1161	1
1171	1
1177	2
1180	3
1186	1
1195	1
1196	1
1197	1
1198	1
1200	1
1203	1
1210	1
1213	1
1214	1
1221	1
1225	1
1226	1
1229	1
1233	1
1237	1
1239	2
1240	1
1252	1
1254	1
1261	2
1263	1
1264	1
1266	2
1267	1
1273	3
1275	1
1276	1
1279	1
1288	1
1303	1
1307	1
1313	1
1318	1
1322	1
1338	1
1349	1
1350	1
1354	1
1355	1
1357	1
1363	1
1370	2
1376	1
1386	1
1387	2
1391	1
1394	2
1395	1
1400	1
1404	1
1405	1
1413	1
1445	1
1451	1
1452	1
1469	1
1481	1
1485	1
1486	1
1513	1
1518	1
1540	1
1541	1
1546	1
1551	1
1561	1
1563	1
1569	1
1630	1
1639	1
1645	1
1658	1
1668	1
1718	1
1725	1
1746	1
1786	1
1808	1
1813	1
1814	1
1836	1
1856	1
1864	1
1873	1
1894	1
1906	1
1923	1
1934	1
1948	1
1962	1
1964	1
1980	1
1985	1
2051	1
2065	1
2095	1
2118	1
2132	1
2136	1
2153	1
2177	1
2205	1
2235	1
2339	1
2703	1
2778	1
2803	1
2992	1
3149	1
3204	1
3268	1
3293	1
3428	1
3459	1
3713	1
3744	1
3813	1
3861	1
4344	1
5008	1
5797	1
7751	1
16921	1
815970	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
..........._...................................._............_.._.......
._...............................
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]