Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/ca0690af675202cab0c4d922d07625/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/7a6eb6563b092534f52ea01f3a25c6/fi_workdir/659_bTq-T1-TRNA-1_B23MHV2LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/ca0690af675202cab0c4d922d07625/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 7590
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 7590
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:7590
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC015911.9--SLFN12L HAVANA mRNA 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^ENST00000260908.12" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC138409.2--NAIP ENSEMBL gene 21878 43057 . + . FI_gene_label "NAIP^ENSG00000249437.8" ; ID "AC138409.2--NAIP^NAIP^ENSG00000249437.8" ; ccdsid "CCDS4009.1" ; exon_id "ENSE00002284906.1" ; exon_number 2 ; gene_id "AC138409.2--NAIP^NAIP^ENSG00000249437.8" ; gene_name NAIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000163318.7" ; hgnc_id "HGNC:7634" ; level 3 ; orig_coord_info "chr5,71012348,71012915,-" ; protein_id "ENSP00000443944.1" ; tag basic appris_principal_2 CCDS ; transcript_id "AC138409.2--NAIP^ENST00000194097.8" ; transcript_name "NAIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC138409.2--NAIP ENSEMBL mRNA 21878 43057 . + . FI_gene_label "NAIP^ENSG00000249437.8" ; ID "AC138409.2--NAIP^ENST00000194097.8" ; Parent "AC138409.2--NAIP^NAIP^ENSG00000249437.8" ; ccdsid "CCDS4009.1" ; exon_id "ENSE00002284906.1" ; exon_number 2 ; gene_id "AC138409.2--NAIP^NAIP^ENSG00000249437.8" ; gene_name NAIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000163318.7" ; hgnc_id "HGNC:7634" ; level 3 ; orig_coord_info "chr5,71012348,71012915,-" ; protein_id "ENSP00000443944.1" ; tag basic appris_principal_2 CCDS ; transcript_id "AC138409.2--NAIP^ENST00000194097.8" ; transcript_name "NAIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AL137000.1--NBEA HAVANA gene 5527 71072 . + . FI_gene_label "NBEA^ENSG00000172915.19" ; ID "AL137000.1--NBEA^NBEA^ENSG00000172915.19" ; exon_id "ENSE00002704235.2" ; exon_number 1 ; gene_id "AL137000.1--NBEA^NBEA^ENSG00000172915.19" ; gene_name NBEA ; gene_type protein_coding ; havana_gene "OTTHUMG00000016724.2" ; hgnc_id "HGNC:7648" ; level 2 ; orig_coord_info "chr13,34942821,34943114,+" ; protein_id "ENSP00000369271.2" ; tag CAGE_supported_TSS inferred_exon_combination RNA_Seq_supported_partial basic MANE_Select ; transcript_id "AL137000.1--NBEA^ENST00000379939.7" ; transcript_name "NBEA-202" ; transcript_support_level 5 ; transcript_type protein_coding
AL137000.1--NBEA HAVANA mRNA 5527 71072 . + . FI_gene_label "NBEA^ENSG00000172915.19" ; ID "AL137000.1--NBEA^ENST00000379939.7" ; Parent "AL137000.1--NBEA^NBEA^ENSG00000172915.19" ; exon_id "ENSE00002704235.2" ; exon_number 1 ; gene_id "AL137000.1--NBEA^NBEA^ENSG00000172915.19" ; gene_name NBEA ; gene_type protein_coding ; havana_gene "OTTHUMG00000016724.2" ; hgnc_id "HGNC:7648" ; level 2 ; orig_coord_info "chr13,34942821,34943114,+" ; protein_id "ENSP00000369271.2" ; tag CAGE_supported_TSS inferred_exon_combination RNA_Seq_supported_partial basic MANE_Select ; transcript_id "AL137000.1--NBEA^ENST00000379939.7" ; transcript_name "NBEA-202" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AL669831.4--SEPTIN14 HAVANA gene 8876 22423 . + . FI_gene_label "SEPTIN14^ENSG00000154997.9" ; ID "AL669831.4--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; ccdsid "CCDS5519.2" ; exon_id "ENSE00003671928.1" ; exon_number 2 ; gene_id "AL669831.4--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; gene_name SEPTIN14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129341.4" ; havana_transcript "OTTHUMT00000251489.3" ; hgnc_id "HGNC:33280" ; level 2 ; orig_coord_info "chr7,55861943,55861996,-" ; protein_id "ENSP00000373627.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AL669831.4--SEPTIN14^ENST00000388975.4" ; transcript_name "SEPTIN14-201" ; transcript_support_level 2 ; transcript_type protein_coding
AL669831.4--SEPTIN14 HAVANA mRNA 8876 22423 . + . FI_gene_label "SEPTIN14^ENSG00000154997.9" ; ID "AL669831.4--SEPTIN14^ENST00000388975.4" ; Parent "AL669831.4--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; ccdsid "CCDS5519.2" ; exon_id "ENSE00003671928.1" ; exon_number 2 ; gene_id "AL669831.4--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; gene_name SEPTIN14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129341.4" ; havana_transcript "OTTHUMT00000251489.3" ; hgnc_id "HGNC:33280" ; level 2 ; orig_coord_info "chr7,55861943,55861996,-" ; protein_id "ENSP00000373627.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AL669831.4--SEPTIN14^ENST00000388975.4" ; transcript_name "SEPTIN14-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
BCL7C--NBEA HAVANA gene 1226 4868 . + . FI_gene_label "BCL7C^ENSG00000099385.12" ; ID "BCL7C--NBEA^BCL7C^ENSG00000099385.12" ; ccdsid "CCDS10693.1" ; exon_id "ENSE00002656701.2" ; exon_number 1 ; gene_id "BCL7C--NBEA^BCL7C^ENSG00000099385.12" ; gene_name BCL7C ; gene_type protein_coding ; havana_gene "OTTHUMG00000177719.2" ; havana_transcript "OTTHUMT00000255547.3" ; hgnc_id "HGNC:1006" ; level 2 ; orig_coord_info "chr16,30893853,30893944,-" ; protein_id "ENSP00000215115.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "BCL7C--NBEA^ENST00000215115.5" ; transcript_name "BCL7C-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCL7C--NBEA HAVANA mRNA 1226 4868 . + . FI_gene_label "BCL7C^ENSG00000099385.12" ; ID "BCL7C--NBEA^ENST00000215115.5" ; Parent "BCL7C--NBEA^BCL7C^ENSG00000099385.12" ; ccdsid "CCDS10693.1" ; exon_id "ENSE00002656701.2" ; exon_number 1 ; gene_id "BCL7C--NBEA^BCL7C^ENSG00000099385.12" ; gene_name BCL7C ; gene_type protein_coding ; havana_gene "OTTHUMG00000177719.2" ; havana_transcript "OTTHUMT00000255547.3" ; hgnc_id "HGNC:1006" ; level 2 ; orig_coord_info "chr16,30893853,30893944,-" ; protein_id "ENSP00000215115.4" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "BCL7C--NBEA^ENST00000215115.5" ; transcript_name "BCL7C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCL7C--NBEA HAVANA gene 13527 79072 . + . FI_gene_label "NBEA^ENSG00000172915.19" ; ID "BCL7C--NBEA^NBEA^ENSG00000172915.19" ; exon_id "ENSE00002704235.2" ; exon_number 1 ; gene_id "BCL7C--NBEA^NBEA^ENSG00000172915.19" ; gene_name NBEA ; gene_type protein_coding ; havana_gene "OTTHUMG00000016724.2" ; hgnc_id "HGNC:7648" ; level 2 ; orig_coord_info "chr13,34942821,34943114,+" ; protein_id "ENSP00000369271.2" ; tag CAGE_supported_TSS inferred_exon_combination RNA_Seq_supported_partial basic MANE_Select ; transcript_id "BCL7C--NBEA^ENST00000379939.7" ; transcript_name "NBEA-202" ; transcript_support_level 5 ; transcript_type protein_coding
BCL7C--NBEA HAVANA mRNA 13527 79072 . + . FI_gene_label "NBEA^ENSG00000172915.19" ; ID "BCL7C--NBEA^ENST00000379939.7" ; Parent "BCL7C--NBEA^NBEA^ENSG00000172915.19" ; exon_id "ENSE00002704235.2" ; exon_number 1 ; gene_id "BCL7C--NBEA^NBEA^ENSG00000172915.19" ; gene_name NBEA ; gene_type protein_coding ; havana_gene "OTTHUMG00000016724.2" ; hgnc_id "HGNC:7648" ; level 2 ; orig_coord_info "chr13,34942821,34943114,+" ; protein_id "ENSP00000369271.2" ; tag CAGE_supported_TSS inferred_exon_combination RNA_Seq_supported_partial basic MANE_Select ; transcript_id "BCL7C--NBEA^ENST00000379939.7" ; transcript_name "NBEA-202" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BIRC6--LINC01320 HAVANA gene 1001 84219 . + . FI_gene_label "BIRC6^ENSG00000115760.14" ; ID "BIRC6--LINC01320^BIRC6^ENSG00000115760.14" ; ccdsid "CCDS33175.2" ; exon_id "ENSE00000743520.4" ; exon_number 1 ; gene_id "BIRC6--LINC01320^BIRC6^ENSG00000115760.14" ; gene_name BIRC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150528.8" ; havana_transcript "OTTHUMT00000318769.4" ; hgnc_id "HGNC:13516" ; level 2 ; orig_coord_info "chr2,32357162,32357486,+" ; protein_id "ENSP00000393596.2" ; tag basic appris_principal_1 CCDS ; transcript_id "BIRC6--LINC01320^ENST00000421745.6" ; transcript_name "BIRC6-201" ; transcript_support_level 1 ; transcript_type protein_coding
BIRC6--LINC01320 HAVANA mRNA 1001 84219 . + . FI_gene_label "BIRC6^ENSG00000115760.14" ; ID "BIRC6--LINC01320^ENST00000421745.6" ; Parent "BIRC6--LINC01320^BIRC6^ENSG00000115760.14" ; ccdsid "CCDS33175.2" ; exon_id "ENSE00000743520.4" ; exon_number 1 ; gene_id "BIRC6--LINC01320^BIRC6^ENSG00000115760.14" ; gene_name BIRC6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150528.8" ; havana_transcript "OTTHUMT00000318769.4" ; hgnc_id "HGNC:13516" ; level 2 ; orig_coord_info "chr2,32357162,32357486,+" ; protein_id "ENSP00000393596.2" ; tag basic appris_principal_1 CCDS ; transcript_id "BIRC6--LINC01320^ENST00000421745.6" ; transcript_name "BIRC6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CDADC1--NBEA HAVANA gene 1001 14264 . + . FI_gene_label "CDADC1^ENSG00000102543.14" ; ID "CDADC1--NBEA^CDADC1^ENSG00000102543.14" ; ccdsid "CCDS9415.1" ; exon_id "ENSE00001917605.1" ; exon_number 1 ; gene_id "CDADC1--NBEA^CDADC1^ENSG00000102543.14" ; gene_name CDADC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016913.6" ; havana_transcript "OTTHUMT00000044902.3" ; hgnc_id "HGNC:20299" ; level 2 ; orig_coord_info "chr13,49248038,49248119,+" ; protein_id "ENSP00000251108.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CDADC1--NBEA^ENST00000251108.10" ; transcript_name "CDADC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CDADC1--NBEA HAVANA mRNA 1001 14264 . + . FI_gene_label "CDADC1^ENSG00000102543.14" ; ID "CDADC1--NBEA^ENST00000251108.10" ; Parent "CDADC1--NBEA^CDADC1^ENSG00000102543.14" ; ccdsid "CCDS9415.1" ; exon_id "ENSE00001917605.1" ; exon_number 1 ; gene_id "CDADC1--NBEA^CDADC1^ENSG00000102543.14" ; gene_name CDADC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016913.6" ; havana_transcript "OTTHUMT00000044902.3" ; hgnc_id "HGNC:20299" ; level 2 ; orig_coord_info "chr13,49248038,49248119,+" ; protein_id "ENSP00000251108.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CDADC1--NBEA^ENST00000251108.10" ; transcript_name "CDADC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CDADC1--NBEA HAVANA gene 17265 82810 . + . FI_gene_label "NBEA^ENSG00000172915.19" ; ID "CDADC1--NBEA^NBEA^ENSG00000172915.19" ; exon_id "ENSE00002704235.2" ; exon_number 1 ; gene_id "CDADC1--NBEA^NBEA^ENSG00000172915.19" ; gene_name NBEA ; gene_type protein_coding ; havana_gene "OTTHUMG00000016724.2" ; hgnc_id "HGNC:7648" ; level 2 ; orig_coord_info "chr13,34942821,34943114,+" ; protein_id "ENSP00000369271.2" ; tag CAGE_supported_TSS inferred_exon_combination RNA_Seq_supported_partial basic MANE_Select ; transcript_id "CDADC1--NBEA^ENST00000379939.7" ; transcript_name "NBEA-202" ; transcript_support_level 5 ; transcript_type protein_coding
CDADC1--NBEA HAVANA mRNA 17265 82810 . + . FI_gene_label "NBEA^ENSG00000172915.19" ; ID "CDADC1--NBEA^ENST00000379939.7" ; Parent "CDADC1--NBEA^NBEA^ENSG00000172915.19" ; exon_id "ENSE00002704235.2" ; exon_number 1 ; gene_id "CDADC1--NBEA^NBEA^ENSG00000172915.19" ; gene_name NBEA ; gene_type protein_coding ; havana_gene "OTTHUMG00000016724.2" ; hgnc_id "HGNC:7648" ; level 2 ; orig_coord_info "chr13,34942821,34943114,+" ; protein_id "ENSP00000369271.2" ; tag CAGE_supported_TSS inferred_exon_combination RNA_Seq_supported_partial basic MANE_Select ; transcript_id "CDADC1--NBEA^ENST00000379939.7" ; transcript_name "NBEA-202" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CDH13--AC009158.1 HAVANA gene 1001 31914 . + . FI_gene_label "CDH13^ENSG00000140945.17" ; ID "CDH13--AC009158.1^CDH13^ENSG00000140945.17" ; ccdsid "CCDS58485.1" ; exon_id "ENSE00002618405.1" ; exon_number 1 ; gene_id "CDH13--AC009158.1^CDH13^ENSG00000140945.17" ; gene_name CDH13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000176635.3" ; havana_transcript "OTTHUMT00000432918.1" ; hgnc_id "HGNC:1753" ; level 1 ; orig_coord_info "chr16,82627058,82627137,+" ; protein_id "ENSP00000268613.10" ; tag basic exp_conf CCDS ; transcript_id "CDH13--AC009158.1^ENST00000268613.14" ; transcript_name "CDH13-201" ; transcript_support_level 2 ; transcript_type protein_coding
CDH13--AC009158.1 HAVANA mRNA 1001 31914 . + . FI_gene_label "CDH13^ENSG00000140945.17" ; ID "CDH13--AC009158.1^ENST00000268613.14" ; Parent "CDH13--AC009158.1^CDH13^ENSG00000140945.17" ; ccdsid "CCDS58485.1" ; exon_id "ENSE00002618405.1" ; exon_number 1 ; gene_id "CDH13--AC009158.1^CDH13^ENSG00000140945.17" ; gene_name CDH13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000176635.3" ; havana_transcript "OTTHUMT00000432918.1" ; hgnc_id "HGNC:1753" ; level 1 ; orig_coord_info "chr16,82627058,82627137,+" ; protein_id "ENSP00000268613.10" ; tag basic exp_conf CCDS ; transcript_id "CDH13--AC009158.1^ENST00000268613.14" ; transcript_name "CDH13-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CDH13--HS3ST4 HAVANA gene 1001 31914 . + . FI_gene_label "CDH13^ENSG00000140945.17" ; ID "CDH13--HS3ST4^CDH13^ENSG00000140945.17" ; ccdsid "CCDS58485.1" ; exon_id "ENSE00002618405.1" ; exon_number 1 ; gene_id "CDH13--HS3ST4^CDH13^ENSG00000140945.17" ; gene_name CDH13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000176635.3" ; havana_transcript "OTTHUMT00000432918.1" ; hgnc_id "HGNC:1753" ; level 1 ; orig_coord_info "chr16,82627058,82627137,+" ; protein_id "ENSP00000268613.10" ; tag basic exp_conf CCDS ; transcript_id "CDH13--HS3ST4^ENST00000268613.14" ; transcript_name "CDH13-201" ; transcript_support_level 2 ; transcript_type protein_coding
CDH13--HS3ST4 HAVANA mRNA 1001 31914 . + . FI_gene_label "CDH13^ENSG00000140945.17" ; ID "CDH13--HS3ST4^ENST00000268613.14" ; Parent "CDH13--HS3ST4^CDH13^ENSG00000140945.17" ; ccdsid "CCDS58485.1" ; exon_id "ENSE00002618405.1" ; exon_number 1 ; gene_id "CDH13--HS3ST4^CDH13^ENSG00000140945.17" ; gene_name CDH13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000176635.3" ; havana_transcript "OTTHUMT00000432918.1" ; hgnc_id "HGNC:1753" ; level 1 ; orig_coord_info "chr16,82627058,82627137,+" ; protein_id "ENSP00000268613.10" ; tag basic exp_conf CCDS ; transcript_id "CDH13--HS3ST4^ENST00000268613.14" ; transcript_name "CDH13-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CDH13--HS3ST4 HAVANA gene 40179 45621 . + . FI_gene_label "HS3ST4^ENSG00000182601.7" ; ID "CDH13--HS3ST4^HS3ST4^ENSG00000182601.7" ; ccdsid "CCDS53995.1" ; exon_id "ENSE00001318483.4" ; exon_number 1 ; gene_id "CDH13--HS3ST4^HS3ST4^ENSG00000182601.7" ; gene_name HS3ST4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059978.4" ; havana_transcript "OTTHUMT00000133286.3" ; hgnc_id "HGNC:5200" ; level 2 ; orig_coord_info "chr16,25692418,25693151,+" ; protein_id "ENSP00000330606.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CDH13--HS3ST4^ENST00000331351.6" ; transcript_name "HS3ST4-201" ; transcript_support_level 1 ; transcript_type protein_coding
CDH13--HS3ST4 HAVANA mRNA 40179 45621 . + . FI_gene_label "HS3ST4^ENSG00000182601.7" ; ID "CDH13--HS3ST4^ENST00000331351.6" ; Parent "CDH13--HS3ST4^HS3ST4^ENSG00000182601.7" ; ccdsid "CCDS53995.1" ; exon_id "ENSE00001318483.4" ; exon_number 1 ; gene_id "CDH13--HS3ST4^HS3ST4^ENSG00000182601.7" ; gene_name HS3ST4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059978.4" ; havana_transcript "OTTHUMT00000133286.3" ; hgnc_id "HGNC:5200" ; level 2 ; orig_coord_info "chr16,25692418,25693151,+" ; protein_id "ENSP00000330606.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CDH13--HS3ST4^ENST00000331351.6" ; transcript_name "HS3ST4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CRYZL2P--SEC16B HAVANA gene 18631 44079 . + . FI_gene_label "SEC16B^ENSG00000120341.18" ; ID "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; ccdsid "CCDS44281.1" ; exon_id "ENSE00003707644.1" ; exon_number 2 ; gene_id "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; gene_name SEC16B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167206.20" ; havana_transcript "OTTHUMT00000084773.22" ; hgnc_id "HGNC:30301" ; level 2 ; orig_coord_info "chr1,177967683,177967981,-" ; protein_id "ENSP00000308339.6" ; tag basic appris_principal_2 CCDS ; transcript_id "CRYZL2P--SEC16B^ENST00000308284.10" ; transcript_name "SEC16B-201" ; transcript_support_level 1 ; transcript_type protein_coding
CRYZL2P--SEC16B HAVANA mRNA 18631 44079 . + . FI_gene_label "SEC16B^ENSG00000120341.18" ; ID "CRYZL2P--SEC16B^ENST00000308284.10" ; Parent "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; ccdsid "CCDS44281.1" ; exon_id "ENSE00003707644.1" ; exon_number 2 ; gene_id "CRYZL2P--SEC16B^SEC16B^ENSG00000120341.18" ; gene_name SEC16B ; gene_type protein_coding ; havana_gene "OTTHUMG00000167206.20" ; havana_transcript "OTTHUMT00000084773.22" ; hgnc_id "HGNC:30301" ; level 2 ; orig_coord_info "chr1,177967683,177967981,-" ; protein_id "ENSP00000308339.6" ; tag basic appris_principal_2 CCDS ; transcript_id "CRYZL2P--SEC16B^ENST00000308284.10" ; transcript_name "SEC16B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DDX55--MIR3908 HAVANA gene 1023 14549 . + . FI_gene_label "DDX55^ENSG00000111364.16" ; ID "DDX55--MIR3908^DDX55^ENSG00000111364.16" ; ccdsid "CCDS9251.1" ; exon_id "ENSE00003669274.1" ; exon_number 1 ; gene_id "DDX55--MIR3908^DDX55^ENSG00000111364.16" ; gene_name DDX55 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168695.3" ; havana_transcript "OTTHUMT00000400616.3" ; hgnc_id "HGNC:20085" ; level 2 ; orig_coord_info "chr12,123602149,123602256,+" ; protein_id "ENSP00000238146.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDX55--MIR3908^ENST00000238146.9" ; transcript_name "DDX55-201" ; transcript_support_level 1 ; transcript_type protein_coding
DDX55--MIR3908 HAVANA mRNA 1023 14549 . + . FI_gene_label "DDX55^ENSG00000111364.16" ; ID "DDX55--MIR3908^ENST00000238146.9" ; Parent "DDX55--MIR3908^DDX55^ENSG00000111364.16" ; ccdsid "CCDS9251.1" ; exon_id "ENSE00003669274.1" ; exon_number 1 ; gene_id "DDX55--MIR3908^DDX55^ENSG00000111364.16" ; gene_name DDX55 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168695.3" ; havana_transcript "OTTHUMT00000400616.3" ; hgnc_id "HGNC:20085" ; level 2 ; orig_coord_info "chr12,123602149,123602256,+" ; protein_id "ENSP00000238146.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDX55--MIR3908^ENST00000238146.9" ; transcript_name "DDX55-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DDX55--TMED2-DT HAVANA gene 1023 14549 . + . FI_gene_label "DDX55^ENSG00000111364.16" ; ID "DDX55--TMED2-DT^DDX55^ENSG00000111364.16" ; ccdsid "CCDS9251.1" ; exon_id "ENSE00003669274.1" ; exon_number 1 ; gene_id "DDX55--TMED2-DT^DDX55^ENSG00000111364.16" ; gene_name DDX55 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168695.3" ; havana_transcript "OTTHUMT00000400616.3" ; hgnc_id "HGNC:20085" ; level 2 ; orig_coord_info "chr12,123602149,123602256,+" ; protein_id "ENSP00000238146.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDX55--TMED2-DT^ENST00000238146.9" ; transcript_name "DDX55-201" ; transcript_support_level 1 ; transcript_type protein_coding
DDX55--TMED2-DT HAVANA mRNA 1023 14549 . + . FI_gene_label "DDX55^ENSG00000111364.16" ; ID "DDX55--TMED2-DT^ENST00000238146.9" ; Parent "DDX55--TMED2-DT^DDX55^ENSG00000111364.16" ; ccdsid "CCDS9251.1" ; exon_id "ENSE00003669274.1" ; exon_number 1 ; gene_id "DDX55--TMED2-DT^DDX55^ENSG00000111364.16" ; gene_name DDX55 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168695.3" ; havana_transcript "OTTHUMT00000400616.3" ; hgnc_id "HGNC:20085" ; level 2 ; orig_coord_info "chr12,123602149,123602256,+" ; protein_id "ENSP00000238146.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DDX55--TMED2-DT^ENST00000238146.9" ; transcript_name "DDX55-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GOLGA6L10--GOLGA2P6 HAVANA gene 1001 9781 . + . FI_gene_label "GOLGA6L10^ENSG00000278662.5" ; ID "GOLGA6L10--GOLGA2P6^GOLGA6L10^ENSG00000278662.5" ; ccdsid "CCDS45325.2" ; exon_id "ENSE00002255247.2" ; exon_number 1 ; gene_id "GOLGA6L10--GOLGA2P6^GOLGA6L10^ENSG00000278662.5" ; gene_name GOLGA6L10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172580.4" ; havana_transcript "OTTHUMT00000419277.4" ; hgnc_id "HGNC:37228" ; level 2 ; orig_coord_info "chr15,82349292,82349375,-" ; protein_id "ENSP00000479362.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GOLGA6L10--GOLGA2P6^ENST00000610657.2" ; transcript_name "GOLGA6L10-207" ; transcript_support_level 2 ; transcript_type protein_coding
GOLGA6L10--GOLGA2P6 HAVANA mRNA 1001 9781 . + . FI_gene_label "GOLGA6L10^ENSG00000278662.5" ; ID "GOLGA6L10--GOLGA2P6^ENST00000610657.2" ; Parent "GOLGA6L10--GOLGA2P6^GOLGA6L10^ENSG00000278662.5" ; ccdsid "CCDS45325.2" ; exon_id "ENSE00002255247.2" ; exon_number 1 ; gene_id "GOLGA6L10--GOLGA2P6^GOLGA6L10^ENSG00000278662.5" ; gene_name GOLGA6L10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000172580.4" ; havana_transcript "OTTHUMT00000419277.4" ; hgnc_id "HGNC:37228" ; level 2 ; orig_coord_info "chr15,82349292,82349375,-" ; protein_id "ENSP00000479362.1" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "GOLGA6L10--GOLGA2P6^ENST00000610657.2" ; transcript_name "GOLGA6L10-207" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LINC02609--GABBR2 HAVANA gene 25113 58853 . + . FI_gene_label "GABBR2^ENSG00000136928.7" ; ID "LINC02609--GABBR2^GABBR2^ENSG00000136928.7" ; ccdsid "CCDS6736.1" ; exon_id "ENSE00001263335.2" ; exon_number 1 ; gene_id "LINC02609--GABBR2^GABBR2^ENSG00000136928.7" ; gene_name GABBR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020345.6" ; havana_transcript "OTTHUMT00000053373.3" ; hgnc_id "HGNC:4507" ; level 2 ; orig_coord_info "chr9,98708417,98708737,-" ; protein_id "ENSP00000259455.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LINC02609--GABBR2^ENST00000259455.4" ; transcript_name "GABBR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
LINC02609--GABBR2 HAVANA mRNA 25113 58853 . + . FI_gene_label "GABBR2^ENSG00000136928.7" ; ID "LINC02609--GABBR2^ENST00000259455.4" ; Parent "LINC02609--GABBR2^GABBR2^ENSG00000136928.7" ; ccdsid "CCDS6736.1" ; exon_id "ENSE00001263335.2" ; exon_number 1 ; gene_id "LINC02609--GABBR2^GABBR2^ENSG00000136928.7" ; gene_name GABBR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020345.6" ; havana_transcript "OTTHUMT00000053373.3" ; hgnc_id "HGNC:4507" ; level 2 ; orig_coord_info "chr9,98708417,98708737,-" ; protein_id "ENSP00000259455.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LINC02609--GABBR2^ENST00000259455.4" ; transcript_name "GABBR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MB21D2--TP63 HAVANA gene 8064 30559 . + . FI_gene_label "TP63^ENSG00000073282.14" ; ID "MB21D2--TP63^TP63^ENSG00000073282.14" ; ccdsid "CCDS3293.1" ; exon_id "ENSE00001343828.2" ; exon_number 1 ; gene_id "MB21D2--TP63^TP63^ENSG00000073282.14" ; gene_name TP63 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156313.3" ; havana_transcript "OTTHUMT00000343865.2" ; hgnc_id "HGNC:15979" ; level 2 ; orig_coord_info "chr3,189631516,189631577,+" ; protein_id "ENSP00000264731.3" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "MB21D2--TP63^ENST00000264731.8" ; transcript_name "TP63-201" ; transcript_support_level 1 ; transcript_type protein_coding
MB21D2--TP63 HAVANA mRNA 8064 30559 . + . FI_gene_label "TP63^ENSG00000073282.14" ; ID "MB21D2--TP63^ENST00000264731.8" ; Parent "MB21D2--TP63^TP63^ENSG00000073282.14" ; ccdsid "CCDS3293.1" ; exon_id "ENSE00001343828.2" ; exon_number 1 ; gene_id "MB21D2--TP63^TP63^ENSG00000073282.14" ; gene_name TP63 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156313.3" ; havana_transcript "OTTHUMT00000343865.2" ; hgnc_id "HGNC:15979" ; level 2 ; orig_coord_info "chr3,189631516,189631577,+" ; protein_id "ENSP00000264731.3" ; tag basic MANE_Select appris_alternative_1 CCDS ; transcript_id "MB21D2--TP63^ENST00000264731.8" ; transcript_name "TP63-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MB21D2--TP63 HAVANA gene 1001 5063 . + . FI_gene_label "MB21D2^ENSG00000180611.7" ; ID "MB21D2--TP63^MB21D2^ENSG00000180611.7" ; ccdsid "CCDS3302.2" ; exon_id "ENSE00001326154.3" ; exon_number 1 ; gene_id "MB21D2--TP63^MB21D2^ENSG00000180611.7" ; gene_name MB21D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155768.2" ; havana_transcript "OTTHUMT00000341543.2" ; hgnc_id "HGNC:30438" ; level 2 ; orig_coord_info "chr3,192917630,192917840,-" ; protein_id "ENSP00000376246.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MB21D2--TP63^ENST00000392452.3" ; transcript_name "MB21D2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MB21D2--TP63 HAVANA mRNA 1001 5063 . + . FI_gene_label "MB21D2^ENSG00000180611.7" ; ID "MB21D2--TP63^ENST00000392452.3" ; Parent "MB21D2--TP63^MB21D2^ENSG00000180611.7" ; ccdsid "CCDS3302.2" ; exon_id "ENSE00001326154.3" ; exon_number 1 ; gene_id "MB21D2--TP63^MB21D2^ENSG00000180611.7" ; gene_name MB21D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155768.2" ; havana_transcript "OTTHUMT00000341543.2" ; hgnc_id "HGNC:30438" ; level 2 ; orig_coord_info "chr3,192917630,192917840,-" ; protein_id "ENSP00000376246.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MB21D2--TP63^ENST00000392452.3" ; transcript_name "MB21D2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MB21D2--TPRG1 HAVANA gene 23767 41997 . + . FI_gene_label "TPRG1^ENSG00000188001.10" ; ID "MB21D2--TPRG1^TPRG1^ENSG00000188001.10" ; ccdsid "CCDS3292.1" ; exon_id "ENSE00003630174.1" ; exon_number 2 ; gene_id "MB21D2--TPRG1^TPRG1^ENSG00000188001.10" ; gene_name TPRG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156321.6" ; havana_transcript "OTTHUMT00000343931.2" ; hgnc_id "HGNC:24759" ; level 2 ; orig_coord_info "chr3,189207385,189207594,+" ; protein_id "ENSP00000341031.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MB21D2--TPRG1^ENST00000345063.8" ; transcript_name "TPRG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MB21D2--TPRG1 HAVANA mRNA 23767 41997 . + . FI_gene_label "TPRG1^ENSG00000188001.10" ; ID "MB21D2--TPRG1^ENST00000345063.8" ; Parent "MB21D2--TPRG1^TPRG1^ENSG00000188001.10" ; ccdsid "CCDS3292.1" ; exon_id "ENSE00003630174.1" ; exon_number 2 ; gene_id "MB21D2--TPRG1^TPRG1^ENSG00000188001.10" ; gene_name TPRG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156321.6" ; havana_transcript "OTTHUMT00000343931.2" ; hgnc_id "HGNC:24759" ; level 2 ; orig_coord_info "chr3,189207385,189207594,+" ; protein_id "ENSP00000341031.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MB21D2--TPRG1^ENST00000345063.8" ; transcript_name "TPRG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MB21D2--TPRG1 HAVANA gene 1001 5063 . + . FI_gene_label "MB21D2^ENSG00000180611.7" ; ID "MB21D2--TPRG1^MB21D2^ENSG00000180611.7" ; ccdsid "CCDS3302.2" ; exon_id "ENSE00001326154.3" ; exon_number 1 ; gene_id "MB21D2--TPRG1^MB21D2^ENSG00000180611.7" ; gene_name MB21D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155768.2" ; havana_transcript "OTTHUMT00000341543.2" ; hgnc_id "HGNC:30438" ; level 2 ; orig_coord_info "chr3,192917630,192917840,-" ; protein_id "ENSP00000376246.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MB21D2--TPRG1^ENST00000392452.3" ; transcript_name "MB21D2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MB21D2--TPRG1 HAVANA mRNA 1001 5063 . + . FI_gene_label "MB21D2^ENSG00000180611.7" ; ID "MB21D2--TPRG1^ENST00000392452.3" ; Parent "MB21D2--TPRG1^MB21D2^ENSG00000180611.7" ; ccdsid "CCDS3302.2" ; exon_id "ENSE00001326154.3" ; exon_number 1 ; gene_id "MB21D2--TPRG1^MB21D2^ENSG00000180611.7" ; gene_name MB21D2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155768.2" ; havana_transcript "OTTHUMT00000341543.2" ; hgnc_id "HGNC:30438" ; level 2 ; orig_coord_info "chr3,192917630,192917840,-" ; protein_id "ENSP00000376246.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MB21D2--TPRG1^ENST00000392452.3" ; transcript_name "MB21D2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MECOM--CACNA1B ENSEMBL gene 8658 32731 . + . FI_gene_label "MECOM^ENSG00000085276.19" ; ID "MECOM--CACNA1B^MECOM^ENSG00000085276.19" ; ccdsid "CCDS54670.1" ; exon_id "ENSE00003659832.1" ; exon_number 2 ; gene_id "MECOM--CACNA1B^MECOM^ENSG00000085276.19" ; gene_name MECOM ; gene_type protein_coding ; havana_gene "OTTHUMG00000158596.9" ; hgnc_id "HGNC:3498" ; level 3 ; orig_coord_info "chr3,169144997,169144999,-" ; protein_id "ENSP00000264674.3" ; tag basic CCDS ; transcript_id "MECOM--CACNA1B^ENST00000264674.7" ; transcript_name "MECOM-201" ; transcript_support_level 1 ; transcript_type protein_coding
MECOM--CACNA1B ENSEMBL mRNA 8658 32731 . + . FI_gene_label "MECOM^ENSG00000085276.19" ; ID "MECOM--CACNA1B^ENST00000264674.7" ; Parent "MECOM--CACNA1B^MECOM^ENSG00000085276.19" ; ccdsid "CCDS54670.1" ; exon_id "ENSE00003659832.1" ; exon_number 2 ; gene_id "MECOM--CACNA1B^MECOM^ENSG00000085276.19" ; gene_name MECOM ; gene_type protein_coding ; havana_gene "OTTHUMG00000158596.9" ; hgnc_id "HGNC:3498" ; level 3 ; orig_coord_info "chr3,169144997,169144999,-" ; protein_id "ENSP00000264674.3" ; tag basic CCDS ; transcript_id "MECOM--CACNA1B^ENST00000264674.7" ; transcript_name "MECOM-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MECOM--CACNA1B ENSEMBL gene 35739 83468 . + . FI_gene_label "CACNA1B^ENSG00000148408.13" ; ID "MECOM--CACNA1B^CACNA1B^ENSG00000148408.13" ; exon_id "ENSE00003730995.1" ; exon_number 1 ; gene_id "MECOM--CACNA1B^CACNA1B^ENSG00000148408.13" ; gene_name CACNA1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000021002.4" ; hgnc_id "HGNC:1389" ; level 3 ; orig_coord_info "chr9,137877934,137878217,+" ; protein_id "ENSP00000277549.6" ; tag basic appris_alternative_2 ; transcript_id "MECOM--CACNA1B^ENST00000277549.9" ; transcript_name "CACNA1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
MECOM--CACNA1B ENSEMBL mRNA 35739 83468 . + . FI_gene_label "CACNA1B^ENSG00000148408.13" ; ID "MECOM--CACNA1B^ENST00000277549.9" ; Parent "MECOM--CACNA1B^CACNA1B^ENSG00000148408.13" ; exon_id "ENSE00003730995.1" ; exon_number 1 ; gene_id "MECOM--CACNA1B^CACNA1B^ENSG00000148408.13" ; gene_name CACNA1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000021002.4" ; hgnc_id "HGNC:1389" ; level 3 ; orig_coord_info "chr9,137877934,137878217,+" ; protein_id "ENSP00000277549.6" ; tag basic appris_alternative_2 ; transcript_id "MECOM--CACNA1B^ENST00000277549.9" ; transcript_name "CACNA1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MIR4713HG--GLDN HAVANA gene 6562 22094 . + . FI_gene_label "GLDN^ENSG00000186417.14" ; ID "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; ccdsid "CCDS10140.2" ; exon_id "ENSE00001632503.4" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; gene_name GLDN ; gene_type protein_coding ; havana_gene "OTTHUMG00000131746.7" ; havana_transcript "OTTHUMT00000254667.3" ; hgnc_id "HGNC:29514" ; level 2 ; orig_coord_info "chr15,51341685,51342047,+" ; protein_id "ENSP00000335196.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MIR4713HG--GLDN^ENST00000335449.11" ; transcript_name "GLDN-201" ; transcript_support_level 2 ; transcript_type protein_coding
MIR4713HG--GLDN HAVANA mRNA 6562 22094 . + . FI_gene_label "GLDN^ENSG00000186417.14" ; ID "MIR4713HG--GLDN^ENST00000335449.11" ; Parent "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; ccdsid "CCDS10140.2" ; exon_id "ENSE00001632503.4" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^GLDN^ENSG00000186417.14" ; gene_name GLDN ; gene_type protein_coding ; havana_gene "OTTHUMG00000131746.7" ; havana_transcript "OTTHUMT00000254667.3" ; hgnc_id "HGNC:29514" ; level 2 ; orig_coord_info "chr15,51341685,51342047,+" ; protein_id "ENSP00000335196.6" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "MIR4713HG--GLDN^ENST00000335449.11" ; transcript_name "GLDN-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
NR6A1--PSMB7 HAVANA gene 21128 31497 . + . FI_gene_label "PSMB7^ENSG00000136930.13" ; ID "NR6A1--PSMB7^PSMB7^ENSG00000136930.13" ; ccdsid "CCDS6855.1" ; exon_id "ENSE00001866322.2" ; exon_number 1 ; gene_id "NR6A1--PSMB7^PSMB7^ENSG00000136930.13" ; gene_name PSMB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021042.3" ; havana_transcript "OTTHUMT00000055525.2" ; hgnc_id "HGNC:9544" ; level 2 ; orig_coord_info "chr9,124415364,124415425,-" ; protein_id "ENSP00000259457.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NR6A1--PSMB7^ENST00000259457.8" ; transcript_name "PSMB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
NR6A1--PSMB7 HAVANA mRNA 21128 31497 . + . FI_gene_label "PSMB7^ENSG00000136930.13" ; ID "NR6A1--PSMB7^ENST00000259457.8" ; Parent "NR6A1--PSMB7^PSMB7^ENSG00000136930.13" ; ccdsid "CCDS6855.1" ; exon_id "ENSE00001866322.2" ; exon_number 1 ; gene_id "NR6A1--PSMB7^PSMB7^ENSG00000136930.13" ; gene_name PSMB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021042.3" ; havana_transcript "OTTHUMT00000055525.2" ; hgnc_id "HGNC:9544" ; level 2 ; orig_coord_info "chr9,124415364,124415425,-" ; protein_id "ENSP00000259457.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NR6A1--PSMB7^ENST00000259457.8" ; transcript_name "PSMB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NR6A1--PSMB7 HAVANA gene 1025 12933 . + . FI_gene_label "NR6A1^ENSG00000148200.17" ; ID "NR6A1--PSMB7^NR6A1^ENSG00000148200.17" ; exon_id "ENSE00001878843.1" ; exon_number 1 ; gene_id "NR6A1--PSMB7^NR6A1^ENSG00000148200.17" ; gene_name NR6A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020661.6" ; havana_transcript "OTTHUMT00000356286.1" ; hgnc_id "HGNC:7985" ; level 2 ; orig_coord_info "chr9,124771020,124771119,-" ; protein_id "ENSP00000341135.4" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "NR6A1--PSMB7^ENST00000344523.8" ; transcript_name "NR6A1-201" ; transcript_support_level 5 ; transcript_type protein_coding
NR6A1--PSMB7 HAVANA mRNA 1025 12933 . + . FI_gene_label "NR6A1^ENSG00000148200.17" ; ID "NR6A1--PSMB7^ENST00000344523.8" ; Parent "NR6A1--PSMB7^NR6A1^ENSG00000148200.17" ; exon_id "ENSE00001878843.1" ; exon_number 1 ; gene_id "NR6A1--PSMB7^NR6A1^ENSG00000148200.17" ; gene_name NR6A1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020661.6" ; havana_transcript "OTTHUMT00000356286.1" ; hgnc_id "HGNC:7985" ; level 2 ; orig_coord_info "chr9,124771020,124771119,-" ; protein_id "ENSP00000341135.4" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "NR6A1--PSMB7^ENST00000344523.8" ; transcript_name "NR6A1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PMS2P6--CCDC146 HAVANA gene 9058 29425 . + . FI_gene_label "CCDC146^ENSG00000135205.15" ; ID "PMS2P6--CCDC146^CCDC146^ENSG00000135205.15" ; ccdsid "CCDS34671.1" ; exon_id "ENSE00003536120.1" ; exon_number 2 ; gene_id "PMS2P6--CCDC146^CCDC146^ENSG00000135205.15" ; gene_name CCDC146 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162595.3" ; havana_transcript "OTTHUMT00000341449.2" ; hgnc_id "HGNC:29296" ; level 2 ; orig_coord_info "chr7,77167669,77167824,+" ; protein_id "ENSP00000285871.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PMS2P6--CCDC146^ENST00000285871.5" ; transcript_name "CCDC146-201" ; transcript_support_level 1 ; transcript_type protein_coding
PMS2P6--CCDC146 HAVANA mRNA 9058 29425 . + . FI_gene_label "CCDC146^ENSG00000135205.15" ; ID "PMS2P6--CCDC146^ENST00000285871.5" ; Parent "PMS2P6--CCDC146^CCDC146^ENSG00000135205.15" ; ccdsid "CCDS34671.1" ; exon_id "ENSE00003536120.1" ; exon_number 2 ; gene_id "PMS2P6--CCDC146^CCDC146^ENSG00000135205.15" ; gene_name CCDC146 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162595.3" ; havana_transcript "OTTHUMT00000341449.2" ; hgnc_id "HGNC:29296" ; level 2 ; orig_coord_info "chr7,77167669,77167824,+" ; protein_id "ENSP00000285871.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PMS2P6--CCDC146^ENST00000285871.5" ; transcript_name "CCDC146-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTPRK--AL356534.1 HAVANA gene 1034 48764 . + . FI_gene_label "PTPRK^ENSG00000152894.15" ; ID "PTPRK--AL356534.1^PTPRK^ENSG00000152894.15" ; exon_id "ENSE00002151979.1" ; exon_number 1 ; gene_id "PTPRK--AL356534.1^PTPRK^ENSG00000152894.15" ; gene_name PTPRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015536.10" ; havana_transcript "OTTHUMT00000390045.1" ; hgnc_id "HGNC:9674" ; level 2 ; orig_coord_info "chr6,128520259,128520358,-" ; protein_id "ENSP00000357190.3" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "PTPRK--AL356534.1^ENST00000368207.7" ; transcript_name "PTPRK-203" ; transcript_support_level 5 ; transcript_type protein_coding
PTPRK--AL356534.1 HAVANA mRNA 1034 48764 . + . FI_gene_label "PTPRK^ENSG00000152894.15" ; ID "PTPRK--AL356534.1^ENST00000368207.7" ; Parent "PTPRK--AL356534.1^PTPRK^ENSG00000152894.15" ; exon_id "ENSE00002151979.1" ; exon_number 1 ; gene_id "PTPRK--AL356534.1^PTPRK^ENSG00000152894.15" ; gene_name PTPRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015536.10" ; havana_transcript "OTTHUMT00000390045.1" ; hgnc_id "HGNC:9674" ; level 2 ; orig_coord_info "chr6,128520259,128520358,-" ; protein_id "ENSP00000357190.3" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "PTPRK--AL356534.1^ENST00000368207.7" ; transcript_name "PTPRK-203" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PTPRK--RSPO3 HAVANA gene 53093 62586 . + . FI_gene_label "RSPO3^ENSG00000146374.14" ; ID "PTPRK--RSPO3^RSPO3^ENSG00000146374.14" ; ccdsid "CCDS5135.1" ; exon_id "ENSE00001858691.2" ; exon_number 1 ; gene_id "PTPRK--RSPO3^RSPO3^ENSG00000146374.14" ; gene_name RSPO3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015521.2" ; havana_transcript "OTTHUMT00000042111.2" ; hgnc_id "HGNC:20866" ; level 2 ; orig_coord_info "chr6,127119193,127119289,+" ; protein_id "ENSP00000349131.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PTPRK--RSPO3^ENST00000356698.9" ; transcript_name "RSPO3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PTPRK--RSPO3 HAVANA mRNA 53093 62586 . + . FI_gene_label "RSPO3^ENSG00000146374.14" ; ID "PTPRK--RSPO3^ENST00000356698.9" ; Parent "PTPRK--RSPO3^RSPO3^ENSG00000146374.14" ; ccdsid "CCDS5135.1" ; exon_id "ENSE00001858691.2" ; exon_number 1 ; gene_id "PTPRK--RSPO3^RSPO3^ENSG00000146374.14" ; gene_name RSPO3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015521.2" ; havana_transcript "OTTHUMT00000042111.2" ; hgnc_id "HGNC:20866" ; level 2 ; orig_coord_info "chr6,127119193,127119289,+" ; protein_id "ENSP00000349131.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "PTPRK--RSPO3^ENST00000356698.9" ; transcript_name "RSPO3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTPRK--RSPO3 HAVANA gene 1034 48764 . + . FI_gene_label "PTPRK^ENSG00000152894.15" ; ID "PTPRK--RSPO3^PTPRK^ENSG00000152894.15" ; exon_id "ENSE00002151979.1" ; exon_number 1 ; gene_id "PTPRK--RSPO3^PTPRK^ENSG00000152894.15" ; gene_name PTPRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015536.10" ; havana_transcript "OTTHUMT00000390045.1" ; hgnc_id "HGNC:9674" ; level 2 ; orig_coord_info "chr6,128520259,128520358,-" ; protein_id "ENSP00000357190.3" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "PTPRK--RSPO3^ENST00000368207.7" ; transcript_name "PTPRK-203" ; transcript_support_level 5 ; transcript_type protein_coding
PTPRK--RSPO3 HAVANA mRNA 1034 48764 . + . FI_gene_label "PTPRK^ENSG00000152894.15" ; ID "PTPRK--RSPO3^ENST00000368207.7" ; Parent "PTPRK--RSPO3^PTPRK^ENSG00000152894.15" ; exon_id "ENSE00002151979.1" ; exon_number 1 ; gene_id "PTPRK--RSPO3^PTPRK^ENSG00000152894.15" ; gene_name PTPRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015536.10" ; havana_transcript "OTTHUMT00000390045.1" ; hgnc_id "HGNC:9674" ; level 2 ; orig_coord_info "chr6,128520259,128520358,-" ; protein_id "ENSP00000357190.3" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "PTPRK--RSPO3^ENST00000368207.7" ; transcript_name "PTPRK-203" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RFC3--FNDC3A HAVANA gene 15003 25873 . + . FI_gene_label "FNDC3A^ENSG00000102531.16" ; ID "RFC3--FNDC3A^FNDC3A^ENSG00000102531.16" ; exon_id "ENSE00003724153.1" ; exon_number 2 ; gene_id "RFC3--FNDC3A^FNDC3A^ENSG00000102531.16" ; gene_name FNDC3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000016911.7" ; havana_transcript "OTTHUMT00000044899.3" ; hgnc_id "HGNC:20296" ; level 2 ; orig_coord_info "chr13,49006191,49006289,+" ; protein_id "ENSP00000484320.1" ; tag basic ; transcript_id "RFC3--FNDC3A^ENST00000378383.5" ; transcript_name "FNDC3A-201" ; transcript_support_level 2 ; transcript_type protein_coding
RFC3--FNDC3A HAVANA mRNA 15003 25873 . + . FI_gene_label "FNDC3A^ENSG00000102531.16" ; ID "RFC3--FNDC3A^ENST00000378383.5" ; Parent "RFC3--FNDC3A^FNDC3A^ENSG00000102531.16" ; exon_id "ENSE00003724153.1" ; exon_number 2 ; gene_id "RFC3--FNDC3A^FNDC3A^ENSG00000102531.16" ; gene_name FNDC3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000016911.7" ; havana_transcript "OTTHUMT00000044899.3" ; hgnc_id "HGNC:20296" ; level 2 ; orig_coord_info "chr13,49006191,49006289,+" ; protein_id "ENSP00000484320.1" ; tag basic ; transcript_id "RFC3--FNDC3A^ENST00000378383.5" ; transcript_name "FNDC3A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
RFC3--FNDC3A HAVANA gene 1081 10373 . + . FI_gene_label "RFC3^ENSG00000133119.13" ; ID "RFC3--FNDC3A^RFC3^ENSG00000133119.13" ; ccdsid "CCDS9352.1" ; exon_id "ENSE00001912539.2" ; exon_number 1 ; gene_id "RFC3--FNDC3A^RFC3^ENSG00000133119.13" ; gene_name RFC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016715.4" ; havana_transcript "OTTHUMT00000044450.3" ; hgnc_id "HGNC:9971" ; level 2 ; orig_coord_info "chr13,33818179,33818265,+" ; protein_id "ENSP00000369411.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RFC3--FNDC3A^ENST00000380071.8" ; transcript_name "RFC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
RFC3--FNDC3A HAVANA mRNA 1081 10373 . + . FI_gene_label "RFC3^ENSG00000133119.13" ; ID "RFC3--FNDC3A^ENST00000380071.8" ; Parent "RFC3--FNDC3A^RFC3^ENSG00000133119.13" ; ccdsid "CCDS9352.1" ; exon_id "ENSE00001912539.2" ; exon_number 1 ; gene_id "RFC3--FNDC3A^RFC3^ENSG00000133119.13" ; gene_name RFC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016715.4" ; havana_transcript "OTTHUMT00000044450.3" ; hgnc_id "HGNC:9971" ; level 2 ; orig_coord_info "chr13,33818179,33818265,+" ; protein_id "ENSP00000369411.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RFC3--FNDC3A^ENST00000380071.8" ; transcript_name "RFC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RFC3--MLNR HAVANA gene 14846 16885 . + . FI_gene_label "MLNR^ENSG00000102539.5" ; ID "RFC3--MLNR^MLNR^ENSG00000102539.5" ; ccdsid "CCDS9414.1" ; exon_id "ENSE00000682501.2" ; exon_number 1 ; gene_id "RFC3--MLNR^MLNR^ENSG00000102539.5" ; gene_name MLNR ; gene_type protein_coding ; havana_gene "OTTHUMG00000016909.2" ; havana_transcript "OTTHUMT00000044897.2" ; hgnc_id "HGNC:4495" ; level 2 ; orig_coord_info "chr13,49220338,49221238,+" ; protein_id "ENSP00000218721.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RFC3--MLNR^ENST00000218721.1" ; transcript_name "MLNR-201" ; transcript_support_level 1 ; transcript_type protein_coding
RFC3--MLNR HAVANA mRNA 14846 16885 . + . FI_gene_label "MLNR^ENSG00000102539.5" ; ID "RFC3--MLNR^ENST00000218721.1" ; Parent "RFC3--MLNR^MLNR^ENSG00000102539.5" ; ccdsid "CCDS9414.1" ; exon_id "ENSE00000682501.2" ; exon_number 1 ; gene_id "RFC3--MLNR^MLNR^ENSG00000102539.5" ; gene_name MLNR ; gene_type protein_coding ; havana_gene "OTTHUMG00000016909.2" ; havana_transcript "OTTHUMT00000044897.2" ; hgnc_id "HGNC:4495" ; level 2 ; orig_coord_info "chr13,49220338,49221238,+" ; protein_id "ENSP00000218721.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RFC3--MLNR^ENST00000218721.1" ; transcript_name "MLNR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RFC3--MLNR HAVANA gene 1081 10373 . + . FI_gene_label "RFC3^ENSG00000133119.13" ; ID "RFC3--MLNR^RFC3^ENSG00000133119.13" ; ccdsid "CCDS9352.1" ; exon_id "ENSE00001912539.2" ; exon_number 1 ; gene_id "RFC3--MLNR^RFC3^ENSG00000133119.13" ; gene_name RFC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016715.4" ; havana_transcript "OTTHUMT00000044450.3" ; hgnc_id "HGNC:9971" ; level 2 ; orig_coord_info "chr13,33818179,33818265,+" ; protein_id "ENSP00000369411.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RFC3--MLNR^ENST00000380071.8" ; transcript_name "RFC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
RFC3--MLNR HAVANA mRNA 1081 10373 . + . FI_gene_label "RFC3^ENSG00000133119.13" ; ID "RFC3--MLNR^ENST00000380071.8" ; Parent "RFC3--MLNR^RFC3^ENSG00000133119.13" ; ccdsid "CCDS9352.1" ; exon_id "ENSE00001912539.2" ; exon_number 1 ; gene_id "RFC3--MLNR^RFC3^ENSG00000133119.13" ; gene_name RFC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016715.4" ; havana_transcript "OTTHUMT00000044450.3" ; hgnc_id "HGNC:9971" ; level 2 ; orig_coord_info "chr13,33818179,33818265,+" ; protein_id "ENSP00000369411.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RFC3--MLNR^ENST00000380071.8" ; transcript_name "RFC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SAMD13--LINC01776 HAVANA gene 4275 9180 . + . FI_gene_label "SAMD13^ENSG00000203943.9" ; ID "SAMD13--LINC01776^SAMD13^ENSG00000203943.9" ; ccdsid "CCDS44166.1" ; exon_id "ENSE00003589303.1" ; exon_number 2 ; gene_id "SAMD13--LINC01776^SAMD13^ENSG00000203943.9" ; gene_name SAMD13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009859.4" ; havana_transcript "OTTHUMT00000027241.2" ; hgnc_id "HGNC:24582" ; level 2 ; orig_coord_info "chr1,84303235,84303287,+" ; protein_id "ENSP00000359702.3" ; tag basic appris_principal_1 CCDS ; transcript_id "SAMD13--LINC01776^ENST00000370668.7" ; transcript_name "SAMD13-201" ; transcript_support_level 1 ; transcript_type protein_coding
SAMD13--LINC01776 HAVANA mRNA 4275 9180 . + . FI_gene_label "SAMD13^ENSG00000203943.9" ; ID "SAMD13--LINC01776^ENST00000370668.7" ; Parent "SAMD13--LINC01776^SAMD13^ENSG00000203943.9" ; ccdsid "CCDS44166.1" ; exon_id "ENSE00003589303.1" ; exon_number 2 ; gene_id "SAMD13--LINC01776^SAMD13^ENSG00000203943.9" ; gene_name SAMD13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009859.4" ; havana_transcript "OTTHUMT00000027241.2" ; hgnc_id "HGNC:24582" ; level 2 ; orig_coord_info "chr1,84303235,84303287,+" ; protein_id "ENSP00000359702.3" ; tag basic appris_principal_1 CCDS ; transcript_id "SAMD13--LINC01776^ENST00000370668.7" ; transcript_name "SAMD13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SAMD13--NFU1P2 HAVANA gene 4275 9180 . + . FI_gene_label "SAMD13^ENSG00000203943.9" ; ID "SAMD13--NFU1P2^SAMD13^ENSG00000203943.9" ; ccdsid "CCDS44166.1" ; exon_id "ENSE00003589303.1" ; exon_number 2 ; gene_id "SAMD13--NFU1P2^SAMD13^ENSG00000203943.9" ; gene_name SAMD13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009859.4" ; havana_transcript "OTTHUMT00000027241.2" ; hgnc_id "HGNC:24582" ; level 2 ; orig_coord_info "chr1,84303235,84303287,+" ; protein_id "ENSP00000359702.3" ; tag basic appris_principal_1 CCDS ; transcript_id "SAMD13--NFU1P2^ENST00000370668.7" ; transcript_name "SAMD13-201" ; transcript_support_level 1 ; transcript_type protein_coding
SAMD13--NFU1P2 HAVANA mRNA 4275 9180 . + . FI_gene_label "SAMD13^ENSG00000203943.9" ; ID "SAMD13--NFU1P2^ENST00000370668.7" ; Parent "SAMD13--NFU1P2^SAMD13^ENSG00000203943.9" ; ccdsid "CCDS44166.1" ; exon_id "ENSE00003589303.1" ; exon_number 2 ; gene_id "SAMD13--NFU1P2^SAMD13^ENSG00000203943.9" ; gene_name SAMD13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000009859.4" ; havana_transcript "OTTHUMT00000027241.2" ; hgnc_id "HGNC:24582" ; level 2 ; orig_coord_info "chr1,84303235,84303287,+" ; protein_id "ENSP00000359702.3" ; tag basic appris_principal_1 CCDS ; transcript_id "SAMD13--NFU1P2^ENST00000370668.7" ; transcript_name "SAMD13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TTLL11--AL353742.1 HAVANA gene 1001 12294 . + . FI_gene_label "TTLL11^ENSG00000175764.15" ; ID "TTLL11--AL353742.1^TTLL11^ENSG00000175764.15" ; exon_id "ENSE00002268412.1" ; exon_number 1 ; gene_id "TTLL11--AL353742.1^TTLL11^ENSG00000175764.15" ; gene_name TTLL11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020597.4" ; hgnc_id "HGNC:18113" ; level 2 ; orig_coord_info "chr9,122092687,122093148,-" ; protein_id "ENSP00000321346.6" ; tag inferred_exon_combination RNA_Seq_supported_partial upstream_ATG basic appris_principal_1 ; transcript_id "TTLL11--AL353742.1^ENST00000321582.10" ; transcript_name "TTLL11-201" ; transcript_support_level 5 ; transcript_type protein_coding
TTLL11--AL353742.1 HAVANA mRNA 1001 12294 . + . FI_gene_label "TTLL11^ENSG00000175764.15" ; ID "TTLL11--AL353742.1^ENST00000321582.10" ; Parent "TTLL11--AL353742.1^TTLL11^ENSG00000175764.15" ; exon_id "ENSE00002268412.1" ; exon_number 1 ; gene_id "TTLL11--AL353742.1^TTLL11^ENSG00000175764.15" ; gene_name TTLL11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020597.4" ; hgnc_id "HGNC:18113" ; level 2 ; orig_coord_info "chr9,122092687,122093148,-" ; protein_id "ENSP00000321346.6" ; tag inferred_exon_combination RNA_Seq_supported_partial upstream_ATG basic appris_principal_1 ; transcript_id "TTLL11--AL353742.1^ENST00000321582.10" ; transcript_name "TTLL11-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TTLL11--AL669983.1 HAVANA gene 1001 12294 . + . FI_gene_label "TTLL11^ENSG00000175764.15" ; ID "TTLL11--AL669983.1^TTLL11^ENSG00000175764.15" ; exon_id "ENSE00002268412.1" ; exon_number 1 ; gene_id "TTLL11--AL669983.1^TTLL11^ENSG00000175764.15" ; gene_name TTLL11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020597.4" ; hgnc_id "HGNC:18113" ; level 2 ; orig_coord_info "chr9,122092687,122093148,-" ; protein_id "ENSP00000321346.6" ; tag inferred_exon_combination RNA_Seq_supported_partial upstream_ATG basic appris_principal_1 ; transcript_id "TTLL11--AL669983.1^ENST00000321582.10" ; transcript_name "TTLL11-201" ; transcript_support_level 5 ; transcript_type protein_coding
TTLL11--AL669983.1 HAVANA mRNA 1001 12294 . + . FI_gene_label "TTLL11^ENSG00000175764.15" ; ID "TTLL11--AL669983.1^ENST00000321582.10" ; Parent "TTLL11--AL669983.1^TTLL11^ENSG00000175764.15" ; exon_id "ENSE00002268412.1" ; exon_number 1 ; gene_id "TTLL11--AL669983.1^TTLL11^ENSG00000175764.15" ; gene_name TTLL11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020597.4" ; hgnc_id "HGNC:18113" ; level 2 ; orig_coord_info "chr9,122092687,122093148,-" ; protein_id "ENSP00000321346.6" ; tag inferred_exon_combination RNA_Seq_supported_partial upstream_ATG basic appris_principal_1 ; transcript_id "TTLL11--AL669983.1^ENST00000321582.10" ; transcript_name "TTLL11-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TUBB4B--RNU5A-1 HAVANA gene 1001 3421 . + . FI_gene_label "TUBB4B^ENSG00000188229.6" ; ID "TUBB4B--RNU5A-1^TUBB4B^ENSG00000188229.6" ; ccdsid "CCDS7039.1" ; exon_id "ENSE00001275234.7" ; exon_number 1 ; gene_id "TUBB4B--RNU5A-1^TUBB4B^ENSG00000188229.6" ; gene_name TUBB4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000131783.3" ; havana_transcript "OTTHUMT00000254715.2" ; hgnc_id "HGNC:20771" ; level 2 ; orig_coord_info "chr9,137241361,137241417,+" ; protein_id "ENSP00000341289.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TUBB4B--RNU5A-1^ENST00000340384.5" ; transcript_name "TUBB4B-201" ; transcript_support_level 1 ; transcript_type protein_coding
TUBB4B--RNU5A-1 HAVANA mRNA 1001 3421 . + . FI_gene_label "TUBB4B^ENSG00000188229.6" ; ID "TUBB4B--RNU5A-1^ENST00000340384.5" ; Parent "TUBB4B--RNU5A-1^TUBB4B^ENSG00000188229.6" ; ccdsid "CCDS7039.1" ; exon_id "ENSE00001275234.7" ; exon_number 1 ; gene_id "TUBB4B--RNU5A-1^TUBB4B^ENSG00000188229.6" ; gene_name TUBB4B ; gene_type protein_coding ; havana_gene "OTTHUMG00000131783.3" ; havana_transcript "OTTHUMT00000254715.2" ; hgnc_id "HGNC:20771" ; level 2 ; orig_coord_info "chr9,137241361,137241417,+" ; protein_id "ENSP00000341289.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TUBB4B--RNU5A-1^ENST00000340384.5" ; transcript_name "TUBB4B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
WASH3P--FOCAD ENSEMBL gene 15443 70480 . + . FI_gene_label "FOCAD^ENSG00000188352.12" ; ID "WASH3P--FOCAD^FOCAD^ENSG00000188352.12" ; ccdsid "CCDS34993.1" ; exon_id "ENSE00002283239.2" ; exon_number 1 ; gene_id "WASH3P--FOCAD^FOCAD^ENSG00000188352.12" ; gene_name FOCAD ; gene_type protein_coding ; havana_gene "OTTHUMG00000066930.4" ; hgnc_id "HGNC:23377" ; level 3 ; orig_coord_info "chr9,20715354,20715410,+" ; protein_id "ENSP00000344307.6" ; tag basic appris_principal_1 CCDS ; transcript_id "WASH3P--FOCAD^ENST00000338382.10" ; transcript_name "FOCAD-201" ; transcript_support_level 5 ; transcript_type protein_coding
WASH3P--FOCAD ENSEMBL mRNA 15443 70480 . + . FI_gene_label "FOCAD^ENSG00000188352.12" ; ID "WASH3P--FOCAD^ENST00000338382.10" ; Parent "WASH3P--FOCAD^FOCAD^ENSG00000188352.12" ; ccdsid "CCDS34993.1" ; exon_id "ENSE00002283239.2" ; exon_number 1 ; gene_id "WASH3P--FOCAD^FOCAD^ENSG00000188352.12" ; gene_name FOCAD ; gene_type protein_coding ; havana_gene "OTTHUMG00000066930.4" ; hgnc_id "HGNC:23377" ; level 3 ; orig_coord_info "chr9,20715354,20715410,+" ; protein_id "ENSP00000344307.6" ; tag basic appris_principal_1 CCDS ; transcript_id "WASH3P--FOCAD^ENST00000338382.10" ; transcript_name "FOCAD-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ZMAT3--MECOM ENSEMBL gene 31106 55179 . + . FI_gene_label "MECOM^ENSG00000085276.19" ; ID "ZMAT3--MECOM^MECOM^ENSG00000085276.19" ; ccdsid "CCDS54670.1" ; exon_id "ENSE00003659832.1" ; exon_number 2 ; gene_id "ZMAT3--MECOM^MECOM^ENSG00000085276.19" ; gene_name MECOM ; gene_type protein_coding ; havana_gene "OTTHUMG00000158596.9" ; hgnc_id "HGNC:3498" ; level 3 ; orig_coord_info "chr3,169144997,169144999,-" ; protein_id "ENSP00000264674.3" ; tag basic CCDS ; transcript_id "ZMAT3--MECOM^ENST00000264674.7" ; transcript_name "MECOM-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZMAT3--MECOM ENSEMBL mRNA 31106 55179 . + . FI_gene_label "MECOM^ENSG00000085276.19" ; ID "ZMAT3--MECOM^ENST00000264674.7" ; Parent "ZMAT3--MECOM^MECOM^ENSG00000085276.19" ; ccdsid "CCDS54670.1" ; exon_id "ENSE00003659832.1" ; exon_number 2 ; gene_id "ZMAT3--MECOM^MECOM^ENSG00000085276.19" ; gene_name MECOM ; gene_type protein_coding ; havana_gene "OTTHUMG00000158596.9" ; hgnc_id "HGNC:3498" ; level 3 ; orig_coord_info "chr3,169144997,169144999,-" ; protein_id "ENSP00000264674.3" ; tag basic CCDS ; transcript_id "ZMAT3--MECOM^ENST00000264674.7" ; transcript_name "MECOM-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZMAT3--MECOM HAVANA gene 1407 14732 . + . FI_gene_label "ZMAT3^ENSG00000172667.11" ; ID "ZMAT3--MECOM^ZMAT3^ENSG00000172667.11" ; ccdsid "CCDS3224.1" ; exon_id "ENSE00001206636.1" ; exon_number 2 ; gene_id "ZMAT3--MECOM^ZMAT3^ENSG00000172667.11" ; gene_name ZMAT3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157290.7" ; havana_transcript "OTTHUMT00000348336.3" ; hgnc_id "HGNC:29983" ; level 2 ; orig_coord_info "chr3,179067483,179067752,-" ; protein_id "ENSP00000311221.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ZMAT3--MECOM^ENST00000311417.7" ; transcript_name "ZMAT3-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZMAT3--MECOM HAVANA mRNA 1407 14732 . + . FI_gene_label "ZMAT3^ENSG00000172667.11" ; ID "ZMAT3--MECOM^ENST00000311417.7" ; Parent "ZMAT3--MECOM^ZMAT3^ENSG00000172667.11" ; ccdsid "CCDS3224.1" ; exon_id "ENSE00001206636.1" ; exon_number 2 ; gene_id "ZMAT3--MECOM^ZMAT3^ENSG00000172667.11" ; gene_name ZMAT3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000157290.7" ; havana_transcript "OTTHUMT00000348336.3" ; hgnc_id "HGNC:29983" ; level 2 ; orig_coord_info "chr3,179067483,179067752,-" ; protein_id "ENSP00000311221.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ZMAT3--MECOM^ENST00000311417.7" ; transcript_name "ZMAT3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
AC015911.9--SLFN12L HAVANA RNA 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^ENST00000650652.2" ; Parent "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC015911.9--SLFN12L ENSEMBL gene 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
AC015911.9--SLFN12L ENSEMBL RNA 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^ENST00000675965.1" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
L1 and L2 created:
AC138409.2--NAIP HAVANA gene 4397 11022 . + . FI_gene_label "AC138409.2^ENSG00000215158.9" ; ID "AC138409.2--NAIP^AC138409.2^ENSG00000215158.9" ; exon_id "ENSE00002080508.1" ; exon_number 1 ; gene_id "AC138409.2--NAIP^AC138409.2^ENSG00000215158.9" ; gene_name "AC138409.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000162181.1" ; havana_transcript "OTTHUMT00000367774.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr5,34218295,34218343,-" ; tag basic ; transcript_id "AC138409.2--NAIP^ENST00000507274.1" ; transcript_name "AC138409.2-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
AC138409.2--NAIP HAVANA RNA 4397 11022 . + . FI_gene_label "AC138409.2^ENSG00000215158.9" ; ID "AC138409.2--NAIP^ENST00000507274.1" ; Parent "AC138409.2--NAIP^AC138409.2^ENSG00000215158.9" ; exon_id "ENSE00002080508.1" ; exon_number 1 ; gene_id "AC138409.2--NAIP^AC138409.2^ENSG00000215158.9" ; gene_name "AC138409.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000162181.1" ; havana_transcript "OTTHUMT00000367774.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr5,34218295,34218343,-" ; tag basic ; transcript_id "AC138409.2--NAIP^ENST00000507274.1" ; transcript_name "AC138409.2-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AL137000.1--NBEA HAVANA gene 1001 2526 . + . FI_gene_label "AL137000.1^ENSG00000274351.1" ; ID "AL137000.1--NBEA^AL137000.1^ENSG00000274351.1" ; exon_id "ENSE00003733208.1" ; exon_number 1 ; gene_id "AL137000.1--NBEA^AL137000.1^ENSG00000274351.1" ; gene_name "AL137000.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187805.1" ; havana_transcript "OTTHUMT00000475575.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr13,49232874,49233344,+" ; tag basic ; transcript_id "AL137000.1--NBEA^ENST00000610528.1" ; transcript_name "AL137000.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
AL137000.1--NBEA HAVANA RNA 1001 2526 . + . FI_gene_label "AL137000.1^ENSG00000274351.1" ; ID "AL137000.1--NBEA^ENST00000610528.1" ; Parent "AL137000.1--NBEA^AL137000.1^ENSG00000274351.1" ; exon_id "ENSE00003733208.1" ; exon_number 1 ; gene_id "AL137000.1--NBEA^AL137000.1^ENSG00000274351.1" ; gene_name "AL137000.1" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000187805.1" ; havana_transcript "OTTHUMT00000475575.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr13,49232874,49233344,+" ; tag basic ; transcript_id "AL137000.1--NBEA^ENST00000610528.1" ; transcript_name "AL137000.1-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
AL669831.4--SEPTIN14 HAVANA gene 1001 5872 . + . FI_gene_label "AL669831.4^ENSG00000230092.7" ; ID "AL669831.4--SEPTIN14^AL669831.4^ENSG00000230092.7" ; exon_id "ENSE00001746491.1" ; exon_number 1 ; gene_id "AL669831.4--SEPTIN14^AL669831.4^ENSG00000230092.7" ; gene_name "AL669831.4" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002403.3" ; havana_transcript "OTTHUMT00000448550.2" ; level 2 ; orig_coord_info "chr1,817373,817712,-" ; tag basic ; transcript_id "AL669831.4--SEPTIN14^ENST00000447500.4" ; transcript_name "AL669831.4-201" ; transcript_support_level 5 ; transcript_type processed_transcript
AL669831.4--SEPTIN14 HAVANA RNA 1001 5872 . + . FI_gene_label "AL669831.4^ENSG00000230092.7" ; ID "AL669831.4--SEPTIN14^ENST00000447500.4" ; Parent "AL669831.4--SEPTIN14^AL669831.4^ENSG00000230092.7" ; exon_id "ENSE00001746491.1" ; exon_number 1 ; gene_id "AL669831.4--SEPTIN14^AL669831.4^ENSG00000230092.7" ; gene_name "AL669831.4" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002403.3" ; havana_transcript "OTTHUMT00000448550.2" ; level 2 ; orig_coord_info "chr1,817373,817712,-" ; tag basic ; transcript_id "AL669831.4--SEPTIN14^ENST00000447500.4" ; transcript_name "AL669831.4-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
BIRC6--LINC01320 HAVANA gene 87220 105361 . + . FI_gene_label "LINC01320^ENSG00000228262.10" ; ID "BIRC6--LINC01320^LINC01320^ENSG00000228262.10" ; exon_id "ENSE00001666431.1" ; exon_number 1 ; gene_id "BIRC6--LINC01320^LINC01320^ENSG00000228262.10" ; gene_name LINC01320 ; gene_type lncRNA ; havana_gene "OTTHUMG00000152144.26" ; havana_transcript "OTTHUMT00000325406.1" ; hgnc_id "HGNC:50526" ; level 2 ; orig_coord_info "chr2,33706886,33706953,+" ; tag dotter_confirmed non_canonical_polymorphism ; transcript_id "BIRC6--LINC01320^ENST00000366209.6" ; transcript_name "LINC01320-201" ; transcript_support_level 5 ; transcript_type lncRNA
BIRC6--LINC01320 HAVANA RNA 87220 105361 . + . FI_gene_label "LINC01320^ENSG00000228262.10" ; ID "BIRC6--LINC01320^ENST00000366209.6" ; Parent "BIRC6--LINC01320^LINC01320^ENSG00000228262.10" ; exon_id "ENSE00001666431.1" ; exon_number 1 ; gene_id "BIRC6--LINC01320^LINC01320^ENSG00000228262.10" ; gene_name LINC01320 ; gene_type lncRNA ; havana_gene "OTTHUMG00000152144.26" ; havana_transcript "OTTHUMT00000325406.1" ; hgnc_id "HGNC:50526" ; level 2 ; orig_coord_info "chr2,33706886,33706953,+" ; tag dotter_confirmed non_canonical_polymorphism ; transcript_id "BIRC6--LINC01320^ENST00000366209.6" ; transcript_name "LINC01320-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
CDH13--AC009158.1 HAVANA gene 41343 47740 . + . FI_gene_label "AC009158.1^ENSG00000231876.8" ; ID "CDH13--AC009158.1^AC009158.1^ENSG00000231876.8" ; exon_id "ENSE00003196488.1" ; exon_number 1 ; gene_id "CDH13--AC009158.1^AC009158.1^ENSG00000231876.8" ; gene_name "AC009158.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000060108.15" ; havana_transcript "OTTHUMT00000133427.1" ; level 2 ; orig_coord_info "chr16,26318107,26318258,+" ; tag TAGENE ; transcript_id "CDH13--AC009158.1^ENST00000417476.2" ; transcript_name "AC009158.1-206" ; transcript_support_level 3 ; transcript_type lncRNA
CDH13--AC009158.1 HAVANA RNA 41343 47740 . + . FI_gene_label "AC009158.1^ENSG00000231876.8" ; ID "CDH13--AC009158.1^ENST00000417476.2" ; Parent "CDH13--AC009158.1^AC009158.1^ENSG00000231876.8" ; exon_id "ENSE00003196488.1" ; exon_number 1 ; gene_id "CDH13--AC009158.1^AC009158.1^ENSG00000231876.8" ; gene_name "AC009158.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000060108.15" ; havana_transcript "OTTHUMT00000133427.1" ; level 2 ; orig_coord_info "chr16,26318107,26318258,+" ; tag TAGENE ; transcript_id "CDH13--AC009158.1^ENST00000417476.2" ; transcript_name "AC009158.1-206" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
CRYZL2P--SEC16B HAVANA gene 1005 12289 . + . FI_gene_label "CRYZL2P^ENSG00000242193.11" ; ID "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; exon_id "ENSE00001918901.2" ; exon_number 1 ; gene_id "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; gene_name CRYZL2P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000154878.4" ; havana_transcript "OTTHUMT00000337460.2" ; hgnc_id "HGNC:52164" ; level 2 ; orig_coord_info "chr1,178037897,178037946,-" ; tag basic ; transcript_id "CRYZL2P--SEC16B^ENST00000462729.2" ; transcript_name "CRYZL2P-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
CRYZL2P--SEC16B HAVANA RNA 1005 12289 . + . FI_gene_label "CRYZL2P^ENSG00000242193.11" ; ID "CRYZL2P--SEC16B^ENST00000462729.2" ; Parent "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; exon_id "ENSE00001918901.2" ; exon_number 1 ; gene_id "CRYZL2P--SEC16B^CRYZL2P^ENSG00000242193.11" ; gene_name CRYZL2P ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000154878.4" ; havana_transcript "OTTHUMT00000337460.2" ; hgnc_id "HGNC:52164" ; level 2 ; orig_coord_info "chr1,178037897,178037946,-" ; tag basic ; transcript_id "CRYZL2P--SEC16B^ENST00000462729.2" ; transcript_name "CRYZL2P-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
L1 and L2 created:
DDX55--MIR3908 ENSEMBL gene 17550 17675 . + . FI_gene_label "MIR3908^ENSG00000266655.1" ; ID "DDX55--MIR3908^MIR3908^ENSG00000266655.1" ; exon_id "ENSE00002715241.1" ; exon_number 1 ; gene_id "DDX55--MIR3908^MIR3908^ENSG00000266655.1" ; gene_name MIR3908 ; gene_type miRNA ; hgnc_id "HGNC:38991" ; level 3 ; orig_coord_info "chr12,123536409,123536534,+" ; tag basic ; transcript_id "DDX55--MIR3908^ENST00000579798.1" ; transcript_name "MIR3908-201" ; transcript_support_level NA ; transcript_type miRNA
DDX55--MIR3908 ENSEMBL RNA 17550 17675 . + . FI_gene_label "MIR3908^ENSG00000266655.1" ; ID "DDX55--MIR3908^ENST00000579798.1" ; Parent "DDX55--MIR3908^MIR3908^ENSG00000266655.1" ; exon_id "ENSE00002715241.1" ; exon_number 1 ; gene_id "DDX55--MIR3908^MIR3908^ENSG00000266655.1" ; gene_name MIR3908 ; gene_type miRNA ; hgnc_id "HGNC:38991" ; level 3 ; orig_coord_info "chr12,123536409,123536534,+" ; tag basic ; transcript_id "DDX55--MIR3908^ENST00000579798.1" ; transcript_name "MIR3908-201" ; transcript_support_level NA ; transcript_type miRNA
L1 and L2 created:
DDX55--TMED2-DT HAVANA gene 17550 26774 . + . FI_gene_label "TMED2-DT^ENSG00000247373.3" ; ID "DDX55--TMED2-DT^TMED2-DT^ENSG00000247373.3" ; exon_id "ENSE00002224469.1" ; exon_number 1 ; gene_id "DDX55--TMED2-DT^TMED2-DT^ENSG00000247373.3" ; gene_name "TMED2-DT" ; gene_type lncRNA ; havana_gene "OTTHUMG00000168693.2" ; havana_transcript "OTTHUMT00000400605.2" ; hgnc_id "HGNC:53346" ; level 2 ; orig_coord_info "chr12,123584212,123585115,-" ; tag RNA_Seq_supported_partial basic ; transcript_id "DDX55--TMED2-DT^ENST00000498967.3" ; transcript_name "TMED2-DT-201" ; transcript_support_level 2 ; transcript_type lncRNA
DDX55--TMED2-DT HAVANA RNA 17550 26774 . + . FI_gene_label "TMED2-DT^ENSG00000247373.3" ; ID "DDX55--TMED2-DT^ENST00000498967.3" ; Parent "DDX55--TMED2-DT^TMED2-DT^ENSG00000247373.3" ; exon_id "ENSE00002224469.1" ; exon_number 1 ; gene_id "DDX55--TMED2-DT^TMED2-DT^ENSG00000247373.3" ; gene_name "TMED2-DT" ; gene_type lncRNA ; havana_gene "OTTHUMG00000168693.2" ; havana_transcript "OTTHUMT00000400605.2" ; hgnc_id "HGNC:53346" ; level 2 ; orig_coord_info "chr12,123584212,123585115,-" ; tag RNA_Seq_supported_partial basic ; transcript_id "DDX55--TMED2-DT^ENST00000498967.3" ; transcript_name "TMED2-DT-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
GOLGA6L10--GOLGA2P6 HAVANA gene 12782 20364 . + . FI_gene_label "GOLGA2P6^ENSG00000241621.1" ; ID "GOLGA6L10--GOLGA2P6^GOLGA2P6^ENSG00000241621.1" ; exon_id "ENSE00001603136.1" ; exon_number 1 ; gene_id "GOLGA6L10--GOLGA2P6^GOLGA2P6^ENSG00000241621.1" ; gene_name GOLGA2P6 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000017890.1" ; havana_transcript "OTTHUMT00000047421.1" ; hgnc_id "HGNC:44948" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chr10,30374327,30374386,-" ; tag pseudo_consens basic ; transcript_id "GOLGA6L10--GOLGA2P6^ENST00000340929.4" ; transcript_name "GOLGA2P6-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
GOLGA6L10--GOLGA2P6 HAVANA RNA 12782 20364 . + . FI_gene_label "GOLGA2P6^ENSG00000241621.1" ; ID "GOLGA6L10--GOLGA2P6^ENST00000340929.4" ; Parent "GOLGA6L10--GOLGA2P6^GOLGA2P6^ENSG00000241621.1" ; exon_id "ENSE00001603136.1" ; exon_number 1 ; gene_id "GOLGA6L10--GOLGA2P6^GOLGA2P6^ENSG00000241621.1" ; gene_name GOLGA2P6 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000017890.1" ; havana_transcript "OTTHUMT00000047421.1" ; hgnc_id "HGNC:44948" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chr10,30374327,30374386,-" ; tag pseudo_consens basic ; transcript_id "GOLGA6L10--GOLGA2P6^ENST00000340929.4" ; transcript_name "GOLGA2P6-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
LINC02609--GABBR2 HAVANA gene 6557 14597 . + . FI_gene_label "LINC02609^ENSG00000233593.10" ; ID "LINC02609--GABBR2^LINC02609^ENSG00000233593.10" ; exon_id "ENSE00003870732.1" ; exon_number 1 ; gene_id "LINC02609--GABBR2^LINC02609^ENSG00000233593.10" ; gene_name LINC02609 ; gene_type lncRNA ; havana_gene "OTTHUMG00000010018.21" ; havana_transcript "OTTHUMT00000525935.1" ; hgnc_id "HGNC:27140" ; level 2 ; orig_coord_info "chr1,90831930,90832201,-" ; tag TAGENE ; transcript_id "LINC02609--GABBR2^ENST00000435649.3" ; transcript_name "LINC02609-201" ; transcript_support_level 5 ; transcript_type lncRNA
LINC02609--GABBR2 HAVANA RNA 6557 14597 . + . FI_gene_label "LINC02609^ENSG00000233593.10" ; ID "LINC02609--GABBR2^ENST00000435649.3" ; Parent "LINC02609--GABBR2^LINC02609^ENSG00000233593.10" ; exon_id "ENSE00003870732.1" ; exon_number 1 ; gene_id "LINC02609--GABBR2^LINC02609^ENSG00000233593.10" ; gene_name LINC02609 ; gene_type lncRNA ; havana_gene "OTTHUMG00000010018.21" ; havana_transcript "OTTHUMT00000525935.1" ; hgnc_id "HGNC:27140" ; level 2 ; orig_coord_info "chr1,90831930,90832201,-" ; tag TAGENE ; transcript_id "LINC02609--GABBR2^ENST00000435649.3" ; transcript_name "LINC02609-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
MIR4713HG--GLDN HAVANA gene 1001 3561 . + . FI_gene_label "MIR4713HG^ENSG00000259240.1" ; ID "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; exon_id "ENSE00002575468.1" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; gene_name MIR4713HG ; gene_type lncRNA ; havana_gene "OTTHUMG00000172467.1" ; havana_transcript "OTTHUMT00000418684.1" ; hgnc_id "HGNC:53124" ; level 2 ; orig_coord_info "chr15,51037488,51037681,+" ; tag basic ; transcript_id "MIR4713HG--GLDN^ENST00000559909.1" ; transcript_name "MIR4713HG-201" ; transcript_support_level 4 ; transcript_type lncRNA
MIR4713HG--GLDN HAVANA RNA 1001 3561 . + . FI_gene_label "MIR4713HG^ENSG00000259240.1" ; ID "MIR4713HG--GLDN^ENST00000559909.1" ; Parent "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; exon_id "ENSE00002575468.1" ; exon_number 1 ; gene_id "MIR4713HG--GLDN^MIR4713HG^ENSG00000259240.1" ; gene_name MIR4713HG ; gene_type lncRNA ; havana_gene "OTTHUMG00000172467.1" ; havana_transcript "OTTHUMT00000418684.1" ; hgnc_id "HGNC:53124" ; level 2 ; orig_coord_info "chr15,51037488,51037681,+" ; tag basic ; transcript_id "MIR4713HG--GLDN^ENST00000559909.1" ; transcript_name "MIR4713HG-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
PMS2P6--CCDC146 HAVANA gene 1001 5876 . + . FI_gene_label "PMS2P6^ENSG00000174384.9" ; ID "PMS2P6--CCDC146^PMS2P6^ENSG00000174384.9" ; exon_id "ENSE00002441642.1" ; exon_number 1 ; gene_id "PMS2P6--CCDC146^PMS2P6^ENSG00000174384.9" ; gene_name PMS2P6 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000157066.2" ; havana_transcript "OTTHUMT00000347345.2" ; hgnc_id "HGNC:33514" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,73093657,73093796,+" ; tag basic ; transcript_id "PMS2P6--CCDC146^ENST00000333674.5" ; transcript_name "PMS2P6-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
PMS2P6--CCDC146 HAVANA RNA 1001 5876 . + . FI_gene_label "PMS2P6^ENSG00000174384.9" ; ID "PMS2P6--CCDC146^ENST00000333674.5" ; Parent "PMS2P6--CCDC146^PMS2P6^ENSG00000174384.9" ; exon_id "ENSE00002441642.1" ; exon_number 1 ; gene_id "PMS2P6--CCDC146^PMS2P6^ENSG00000174384.9" ; gene_name PMS2P6 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000157066.2" ; havana_transcript "OTTHUMT00000347345.2" ; hgnc_id "HGNC:33514" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,73093657,73093796,+" ; tag basic ; transcript_id "PMS2P6--CCDC146^ENST00000333674.5" ; transcript_name "PMS2P6-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
PTPRK--AL356534.1 HAVANA gene 120183 121476 . + . FI_gene_label "AL356534.1^ENSG00000286215.1" ; ID "PTPRK--AL356534.1^AL356534.1^ENSG00000286215.1" ; exon_id "ENSE00001556513.3" ; exon_number 1 ; gene_id "PTPRK--AL356534.1^AL356534.1^ENSG00000286215.1" ; gene_name "AL356534.1" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000015519.5" ; havana_transcript "OTTHUMT00000042107.4" ; level 1 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr6,126602356,126603649,-" ; tag pseudo_consens basic ; transcript_id "PTPRK--AL356534.1^ENST00000402383.3" ; transcript_name "AL356534.1-205" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
PTPRK--AL356534.1 HAVANA RNA 120183 121476 . + . FI_gene_label "AL356534.1^ENSG00000286215.1" ; ID "PTPRK--AL356534.1^ENST00000402383.3" ; Parent "PTPRK--AL356534.1^AL356534.1^ENSG00000286215.1" ; exon_id "ENSE00001556513.3" ; exon_number 1 ; gene_id "PTPRK--AL356534.1^AL356534.1^ENSG00000286215.1" ; gene_name "AL356534.1" ; gene_type transcribed_processed_pseudogene ; havana_gene "OTTHUMG00000015519.5" ; havana_transcript "OTTHUMT00000042107.4" ; level 1 ; ont "PGO:0000004" "PGO:0000019" ; orig_coord_info "chr6,126602356,126603649,-" ; tag pseudo_consens basic ; transcript_id "PTPRK--AL356534.1^ENST00000402383.3" ; transcript_name "AL356534.1-205" ; transcript_support_level NA ; transcript_type transcribed_processed_pseudogene
L1 and L2 created:
SAMD13--LINC01776 HAVANA gene 14476 18704 . + . FI_gene_label "LINC01776^ENSG00000226053.1" ; ID "SAMD13--LINC01776^LINC01776^ENSG00000226053.1" ; exon_id "ENSE00001710049.1" ; exon_number 1 ; gene_id "SAMD13--LINC01776^LINC01776^ENSG00000226053.1" ; gene_name LINC01776 ; gene_type lncRNA ; havana_gene "OTTHUMG00000010681.1" ; havana_transcript "OTTHUMT00000029438.1" ; hgnc_id "HGNC:52566" ; level 2 ; orig_coord_info "chr1,98210747,98210810,+" ; tag basic ; transcript_id "SAMD13--LINC01776^ENST00000418344.1" ; transcript_name "LINC01776-201" ; transcript_support_level 2 ; transcript_type lncRNA
SAMD13--LINC01776 HAVANA RNA 14476 18704 . + . FI_gene_label "LINC01776^ENSG00000226053.1" ; ID "SAMD13--LINC01776^ENST00000418344.1" ; Parent "SAMD13--LINC01776^LINC01776^ENSG00000226053.1" ; exon_id "ENSE00001710049.1" ; exon_number 1 ; gene_id "SAMD13--LINC01776^LINC01776^ENSG00000226053.1" ; gene_name LINC01776 ; gene_type lncRNA ; havana_gene "OTTHUMG00000010681.1" ; havana_transcript "OTTHUMT00000029438.1" ; hgnc_id "HGNC:52566" ; level 2 ; orig_coord_info "chr1,98210747,98210810,+" ; tag basic ; transcript_id "SAMD13--LINC01776^ENST00000418344.1" ; transcript_name "LINC01776-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
SAMD13--NFU1P2 HAVANA gene 14476 14944 . + . FI_gene_label "NFU1P2^ENSG00000233557.2" ; ID "SAMD13--NFU1P2^NFU1P2^ENSG00000233557.2" ; exon_id "ENSE00001715435.2" ; exon_number 1 ; gene_id "SAMD13--NFU1P2^NFU1P2^ENSG00000233557.2" ; gene_name NFU1P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000010679.2" ; havana_transcript "OTTHUMT00000029436.2" ; hgnc_id "HGNC:44554" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr1,98077000,98077468,+" ; tag pseudo_consens basic ; transcript_id "SAMD13--NFU1P2^ENST00000448700.2" ; transcript_name "NFU1P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
SAMD13--NFU1P2 HAVANA RNA 14476 14944 . + . FI_gene_label "NFU1P2^ENSG00000233557.2" ; ID "SAMD13--NFU1P2^ENST00000448700.2" ; Parent "SAMD13--NFU1P2^NFU1P2^ENSG00000233557.2" ; exon_id "ENSE00001715435.2" ; exon_number 1 ; gene_id "SAMD13--NFU1P2^NFU1P2^ENSG00000233557.2" ; gene_name NFU1P2 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000010679.2" ; havana_transcript "OTTHUMT00000029436.2" ; hgnc_id "HGNC:44554" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr1,98077000,98077468,+" ; tag pseudo_consens basic ; transcript_id "SAMD13--NFU1P2^ENST00000448700.2" ; transcript_name "NFU1P2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TTLL11--AL353742.1 HAVANA gene 15295 16518 . + . FI_gene_label "AL353742.1^ENSG00000230030.1" ; ID "TTLL11--AL353742.1^AL353742.1^ENSG00000230030.1" ; exon_id "ENSE00001685298.1" ; exon_number 1 ; gene_id "TTLL11--AL353742.1^AL353742.1^ENSG00000230030.1" ; gene_name "AL353742.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000020457.1" ; havana_transcript "OTTHUMT00000053566.1" ; level 2 ; orig_coord_info "chr9,108254712,108254820,-" ; tag basic ; transcript_id "TTLL11--AL353742.1^ENST00000453455.1" ; transcript_name "AL353742.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
TTLL11--AL353742.1 HAVANA RNA 15295 16518 . + . FI_gene_label "AL353742.1^ENSG00000230030.1" ; ID "TTLL11--AL353742.1^ENST00000453455.1" ; Parent "TTLL11--AL353742.1^AL353742.1^ENSG00000230030.1" ; exon_id "ENSE00001685298.1" ; exon_number 1 ; gene_id "TTLL11--AL353742.1^AL353742.1^ENSG00000230030.1" ; gene_name "AL353742.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000020457.1" ; havana_transcript "OTTHUMT00000053566.1" ; level 2 ; orig_coord_info "chr9,108254712,108254820,-" ; tag basic ; transcript_id "TTLL11--AL353742.1^ENST00000453455.1" ; transcript_name "AL353742.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
TTLL11--AL669983.1 HAVANA gene 15295 15612 . + . FI_gene_label "AL669983.1^ENSG00000169253.3" ; ID "TTLL11--AL669983.1^AL669983.1^ENSG00000169253.3" ; exon_id "ENSE00001849819.1" ; exon_number 1 ; gene_id "TTLL11--AL669983.1^AL669983.1^ENSG00000169253.3" ; gene_name "AL669983.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000020458.2" ; havana_transcript "OTTHUMT00000053567.2" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr9,108626833,108627150,+" ; tag pseudo_consens basic ; transcript_id "TTLL11--AL669983.1^ENST00000306634.3" ; transcript_name "AL669983.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TTLL11--AL669983.1 HAVANA RNA 15295 15612 . + . FI_gene_label "AL669983.1^ENSG00000169253.3" ; ID "TTLL11--AL669983.1^ENST00000306634.3" ; Parent "TTLL11--AL669983.1^AL669983.1^ENSG00000169253.3" ; exon_id "ENSE00001849819.1" ; exon_number 1 ; gene_id "TTLL11--AL669983.1^AL669983.1^ENSG00000169253.3" ; gene_name "AL669983.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000020458.2" ; havana_transcript "OTTHUMT00000053567.2" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr9,108626833,108627150,+" ; tag pseudo_consens basic ; transcript_id "TTLL11--AL669983.1^ENST00000306634.3" ; transcript_name "AL669983.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TUBB4B--RNU5A-1 ENSEMBL gene 6422 6537 . + . FI_gene_label "RNU5A-1^ENSG00000199568.1" ; ID "TUBB4B--RNU5A-1^RNU5A-1^ENSG00000199568.1" ; exon_id "ENSE00001807565.1" ; exon_number 1 ; gene_id "TUBB4B--RNU5A-1^RNU5A-1^ENSG00000199568.1" ; gene_name "RNU5A-1" ; gene_type snRNA ; hgnc_id "HGNC:10211" ; level 3 ; orig_coord_info "chr15,65296051,65296166,+" ; tag basic ; transcript_id "TUBB4B--RNU5A-1^ENST00000362698.1" ; transcript_name "RNU5A-1-201" ; transcript_support_level NA ; transcript_type snRNA
TUBB4B--RNU5A-1 ENSEMBL RNA 6422 6537 . + . FI_gene_label "RNU5A-1^ENSG00000199568.1" ; ID "TUBB4B--RNU5A-1^ENST00000362698.1" ; Parent "TUBB4B--RNU5A-1^RNU5A-1^ENSG00000199568.1" ; exon_id "ENSE00001807565.1" ; exon_number 1 ; gene_id "TUBB4B--RNU5A-1^RNU5A-1^ENSG00000199568.1" ; gene_name "RNU5A-1" ; gene_type snRNA ; hgnc_id "HGNC:10211" ; level 3 ; orig_coord_info "chr15,65296051,65296166,+" ; tag basic ; transcript_id "TUBB4B--RNU5A-1^ENST00000362698.1" ; transcript_name "RNU5A-1-201" ; transcript_support_level NA ; transcript_type snRNA
L1 and L2 created:
WASH3P--FOCAD HAVANA gene 1016 5959 . + . FI_gene_label "WASH3P^ENSG00000185596.16" ; ID "WASH3P--FOCAD^WASH3P^ENSG00000185596.16" ; exon_id "ENSE00002534869.1" ; exon_number 1 ; gene_id "WASH3P--FOCAD^WASH3P^ENSG00000185596.16" ; gene_name WASH3P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000172275.2" ; havana_transcript "OTTHUMT00000417607.1" ; hgnc_id "HGNC:24362" ; level 2 ; orig_coord_info "chr15,101961618,101961641,+" ; transcript_id "WASH3P--FOCAD^ENST00000354296.9" ; transcript_name "WASH3P-201" ; transcript_support_level 2 ; transcript_type processed_transcript
WASH3P--FOCAD HAVANA RNA 1016 5959 . + . FI_gene_label "WASH3P^ENSG00000185596.16" ; ID "WASH3P--FOCAD^ENST00000354296.9" ; Parent "WASH3P--FOCAD^WASH3P^ENSG00000185596.16" ; exon_id "ENSE00002534869.1" ; exon_number 1 ; gene_id "WASH3P--FOCAD^WASH3P^ENSG00000185596.16" ; gene_name WASH3P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000172275.2" ; havana_transcript "OTTHUMT00000417607.1" ; hgnc_id "HGNC:24362" ; level 2 ; orig_coord_info "chr15,101961618,101961641,+" ; transcript_id "WASH3P--FOCAD^ENST00000354296.9" ; transcript_name "WASH3P-201" ; transcript_support_level 2 ; transcript_type processed_transcript
566 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
757 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 47 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 0 second) ------
GFF3 file parsed