Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/d5d0182935005c437313ca270246e2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/d5d0182935005c437313ca270246e2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c8/d0c0feb342ba15d22e38959fae9216/659_bR4-T1-TRNA-1_B23MHV2LT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/63ce0422ecd906b9fb03dc52a290b4/659_bR4-T1-TRNA-1_B23MHV2LT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_bR4-T1-TRNA-1_B23MHV2LT4_1/abundance.h5
Successfully converted 659_bR4-T1-TRNA-1_B23MHV2LT4_1/abundance.h5 to 659_bR4-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv
  Sample: 659_bR4-T1-TRNA-1_B23MHV2LT4_1
  Mean Fragment Length: 135.8 bp
  Median Fragment Length: 125.0 bp
  pct_mito_est_counts: 0.007%
  pct_ribo_est_counts: 1.059%
  pct_hk_est_counts: 0.563%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.015%
  pct_ribo_tpm: 3.3%
  pct_hk_tpm: 0.798%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 6.017%