Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/2665d15d6e33e66656eb38cd5ac720/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b5/8310816ed82d790df9cb8f711883fc/659_bCu-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/2665d15d6e33e66656eb38cd5ac720/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7a/f0390cd888d8d1101cd2cbe1f5d605/659_bCu-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
TNS1--ALK
starfusion
arriba
NAV2--NELL1
starfusion
arriba
TRPC2--WEE1
starfusion
arriba
IRAG1--ZNF143
starfusion
arriba
PPFIBP2--PARVA
starfusion
arriba
RHOG--SBF2
starfusion
arriba
ADAM23--HDAC4
starfusion
arriba
HDAC4--KCNS3
starfusion
arriba
TBP--ATXN3
starfusion
NELL1--INSC
arriba
SBF2--AC087379.1
arriba
SBF2--AC009869.1
arriba
BMS1P23--AFF3
arriba
AL845331.2--AFF3
arriba
HDAC4--HDAC4
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
ZNF143--LINC02751
arriba
ALK--SPHKAP
arriba
ALK--SNF8P1
arriba
0%| | 0/21 [00:00<?, ?it/s]
Processing TNS1--ALK: 0%| | 0/21 [00:00<?, ?it/s]
Processing TNS1--ALK: 5%|▍ | 1/21 [00:00<00:02, 9.15it/s]
Processing NAV2--NELL1: 5%|▍ | 1/21 [00:00<00:02, 9.15it/s]
Processing NAV2--NELL1: 10%|▉ | 2/21 [00:00<00:02, 9.35it/s]
Processing TRPC2--WEE1: 10%|▉ | 2/21 [00:00<00:02, 9.35it/s]
Processing TRPC2--WEE1: 14%|█▍ | 3/21 [00:00<00:01, 9.40it/s]
Processing IRAG1--ZNF143: 14%|█▍ | 3/21 [00:00<00:01, 9.40it/s]
Processing IRAG1--ZNF143: 19%|█▉ | 4/21 [00:00<00:01, 9.43it/s]
Processing PPFIBP2--PARVA: 19%|█▉ | 4/21 [00:00<00:01, 9.43it/s]
Processing PPFIBP2--PARVA: 24%|██▍ | 5/21 [00:00<00:01, 9.44it/s]
Processing RHOG--SBF2: 24%|██▍ | 5/21 [00:00<00:01, 9.44it/s]
Processing RHOG--SBF2: 29%|██▊ | 6/21 [00:00<00:01, 9.45it/s]
Processing ADAM23--HDAC4: 29%|██▊ | 6/21 [00:00<00:01, 9.45it/s]
Processing ADAM23--HDAC4: 33%|███▎ | 7/21 [00:00<00:01, 9.42it/s]
Processing HDAC4--KCNS3: 33%|███▎ | 7/21 [00:00<00:01, 9.42it/s]
Processing HDAC4--KCNS3: 38%|███▊ | 8/21 [00:00<00:01, 9.42it/s]
Processing TBP--ATXN3: 38%|███▊ | 8/21 [00:00<00:01, 9.42it/s]
Processing TBP--ATXN3: 43%|████▎ | 9/21 [00:00<00:01, 9.44it/s]
Processing NELL1--INSC: 43%|████▎ | 9/21 [00:00<00:01, 9.44it/s]
Processing NELL1--INSC: 48%|████▊ | 10/21 [00:01<00:01, 9.38it/s]
Processing SBF2--AC087379.1: 48%|████▊ | 10/21 [00:01<00:01, 9.38it/s]
Processing SBF2--AC087379.1: 52%|█████▏ | 11/21 [00:01<00:01, 9.40it/s]
Processing SBF2--AC009869.1: 52%|█████▏ | 11/21 [00:01<00:01, 9.40it/s]
Processing SBF2--AC009869.1: 57%|█████▋ | 12/21 [00:01<00:00, 9.41it/s]
Processing BMS1P23--AFF3: 57%|█████▋ | 12/21 [00:01<00:00, 9.41it/s]
Processing BMS1P23--AFF3: 62%|██████▏ | 13/21 [00:01<00:00, 9.43it/s]
Processing AL845331.2--AFF3: 62%|██████▏ | 13/21 [00:01<00:00, 9.43it/s]
Processing AL845331.2--AFF3: 67%|██████▋ | 14/21 [00:01<00:00, 9.41it/s]
Processing HDAC4--HDAC4: 67%|██████▋ | 14/21 [00:01<00:00, 9.41it/s]
Processing HDAC4--HDAC4: 71%|███████▏ | 15/21 [00:01<00:00, 9.41it/s]
Processing PCDHA10--PCDHAC2: 71%|███████▏ | 15/21 [00:01<00:00, 9.41it/s]
Processing PCDHA10--PCDHAC2: 76%|███████▌ | 16/21 [00:01<00:00, 9.43it/s]
Processing PCDHA10--PCDHAC1: 76%|███████▌ | 16/21 [00:01<00:00, 9.43it/s]
Processing PCDHA10--PCDHAC1: 81%|████████ | 17/21 [00:01<00:00, 9.42it/s]
Processing PCDHA10--PCDHA13: 81%|████████ | 17/21 [00:01<00:00, 9.42it/s]
Processing PCDHA10--PCDHA13: 86%|████████▌ | 18/21 [00:01<00:00, 9.44it/s]
Processing ZNF143--LINC02751: 86%|████████▌ | 18/21 [00:01<00:00, 9.44it/s]
Processing ZNF143--LINC02751: 90%|█████████ | 19/21 [00:02<00:00, 9.45it/s]
Processing ALK--SPHKAP: 90%|█████████ | 19/21 [00:02<00:00, 9.45it/s]
Processing ALK--SPHKAP: 95%|█████████▌| 20/21 [00:02<00:00, 9.46it/s]
Processing ALK--SNF8P1: 95%|█████████▌| 20/21 [00:02<00:00, 9.46it/s]
Processing ALK--SNF8P1: 100%|██████████| 21/21 [00:02<00:00, 9.45it/s]
Processing ALK--SNF8P1: 100%|██████████| 21/21 [00:02<00:00, 9.42it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory