Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 13254
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 13254
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:13254
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 3 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ACO2--ENTHD1 HAVANA gene 2215 27148 . + . FI_gene_label "ACO2^ENSG00000100412.17" ; ID "ACO2--ENTHD1^ACO2^ENSG00000100412.17" ; ccdsid "CCDS14017.1" ; exon_id "ENSE00001340994.4" ; exon_number 1 ; gene_id "ACO2--ENTHD1^ACO2^ENSG00000100412.17" ; gene_name ACO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030544.4" ; havana_transcript "OTTHUMT00000259151.2" ; hgnc_id "HGNC:118" ; level 2 ; orig_coord_info "chr22,41469147,41469182,+" ; protein_id "ENSP00000216254.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACO2--ENTHD1^ENST00000216254.9" ; transcript_name "ACO2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ACO2--ENTHD1 HAVANA mRNA 2215 27148 . + . FI_gene_label "ACO2^ENSG00000100412.17" ; ID "ACO2--ENTHD1^ENST00000216254.9" ; Parent "ACO2--ENTHD1^ACO2^ENSG00000100412.17" ; ccdsid "CCDS14017.1" ; exon_id "ENSE00001340994.4" ; exon_number 1 ; gene_id "ACO2--ENTHD1^ACO2^ENSG00000100412.17" ; gene_name ACO2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030544.4" ; havana_transcript "OTTHUMT00000259151.2" ; hgnc_id "HGNC:118" ; level 2 ; orig_coord_info "chr22,41469147,41469182,+" ; protein_id "ENSP00000216254.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACO2--ENTHD1^ENST00000216254.9" ; transcript_name "ACO2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ACO2--ENTHD1 HAVANA gene 30552 39711 . + . FI_gene_label "ENTHD1^ENSG00000176177.10" ; ID "ACO2--ENTHD1^ENTHD1^ENSG00000176177.10" ; ccdsid "CCDS13998.1" ; exon_id "ENSE00001290271.4" ; exon_number 2 ; gene_id "ACO2--ENTHD1^ENTHD1^ENSG00000176177.10" ; gene_name ENTHD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151098.2" ; havana_transcript "OTTHUMT00000321302.2" ; hgnc_id "HGNC:26352" ; level 2 ; orig_coord_info "chr22,39887400,39887748,-" ; protein_id "ENSP00000317431.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACO2--ENTHD1^ENST00000325157.7" ; transcript_name "ENTHD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ACO2--ENTHD1 HAVANA mRNA 30552 39711 . + . FI_gene_label "ENTHD1^ENSG00000176177.10" ; ID "ACO2--ENTHD1^ENST00000325157.7" ; Parent "ACO2--ENTHD1^ENTHD1^ENSG00000176177.10" ; ccdsid "CCDS13998.1" ; exon_id "ENSE00001290271.4" ; exon_number 2 ; gene_id "ACO2--ENTHD1^ENTHD1^ENSG00000176177.10" ; gene_name ENTHD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151098.2" ; havana_transcript "OTTHUMT00000321302.2" ; hgnc_id "HGNC:26352" ; level 2 ; orig_coord_info "chr22,39887400,39887748,-" ; protein_id "ENSP00000317431.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ACO2--ENTHD1^ENST00000325157.7" ; transcript_name "ENTHD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AGAP12P--FRMPD2 HAVANA gene 13554 48555 . + . FI_gene_label "FRMPD2^ENSG00000170324.21" ; ID "AGAP12P--FRMPD2^FRMPD2^ENSG00000170324.21" ; ccdsid "CCDS81460.1" ; exon_id "ENSE00001390154.1" ; exon_number 1 ; gene_id "AGAP12P--FRMPD2^FRMPD2^ENSG00000170324.21" ; gene_name FRMPD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018171.7" ; havana_transcript "OTTHUMT00000277029.1" ; hgnc_id "HGNC:28572" ; level 2 ; orig_coord_info "chr10,48251566,48251710,-" ; protein_id "ENSP00000307079.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "AGAP12P--FRMPD2^ENST00000305531.3" ; transcript_name "FRMPD2-201" ; transcript_support_level 5 ; transcript_type protein_coding
AGAP12P--FRMPD2 HAVANA mRNA 13554 48555 . + . FI_gene_label "FRMPD2^ENSG00000170324.21" ; ID "AGAP12P--FRMPD2^ENST00000305531.3" ; Parent "AGAP12P--FRMPD2^FRMPD2^ENSG00000170324.21" ; ccdsid "CCDS81460.1" ; exon_id "ENSE00001390154.1" ; exon_number 1 ; gene_id "AGAP12P--FRMPD2^FRMPD2^ENSG00000170324.21" ; gene_name FRMPD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018171.7" ; havana_transcript "OTTHUMT00000277029.1" ; hgnc_id "HGNC:28572" ; level 2 ; orig_coord_info "chr10,48251566,48251710,-" ; protein_id "ENSP00000307079.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "AGAP12P--FRMPD2^ENST00000305531.3" ; transcript_name "FRMPD2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AL157996.2--CDKAL1 HAVANA gene 6392 26873 . + . FI_gene_label "CDKAL1^ENSG00000145996.11" ; ID "AL157996.2--CDKAL1^CDKAL1^ENSG00000145996.11" ; ccdsid "CCDS4546.1" ; exon_id "ENSE00003893317.1" ; exon_number 3 ; gene_id "AL157996.2--CDKAL1^CDKAL1^ENSG00000145996.11" ; gene_name CDKAL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014340.2" ; havana_transcript "OTTHUMT00000504200.1" ; hgnc_id "HGNC:21050" ; level 2 ; orig_coord_info "chr6,20546351,20546523,+" ; protein_id "ENSP00000274695.4" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "AL157996.2--CDKAL1^ENST00000274695.8" ; transcript_name "CDKAL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AL157996.2--CDKAL1 HAVANA mRNA 6392 26873 . + . FI_gene_label "CDKAL1^ENSG00000145996.11" ; ID "AL157996.2--CDKAL1^ENST00000274695.8" ; Parent "AL157996.2--CDKAL1^CDKAL1^ENSG00000145996.11" ; ccdsid "CCDS4546.1" ; exon_id "ENSE00003893317.1" ; exon_number 3 ; gene_id "AL157996.2--CDKAL1^CDKAL1^ENSG00000145996.11" ; gene_name CDKAL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014340.2" ; havana_transcript "OTTHUMT00000504200.1" ; hgnc_id "HGNC:21050" ; level 2 ; orig_coord_info "chr6,20546351,20546523,+" ; protein_id "ENSP00000274695.4" ; tag RNA_Seq_supported_only basic MANE_Select appris_principal_1 CCDS ; transcript_id "AL157996.2--CDKAL1^ENST00000274695.8" ; transcript_name "CDKAL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ASXL1--MACROD2 HAVANA gene 24700 62216 . + . FI_gene_label "MACROD2^ENSG00000172264.17" ; ID "ASXL1--MACROD2^MACROD2^ENSG00000172264.17" ; ccdsid "CCDS13120.2" ; exon_id "ENSE00001728314.1" ; exon_number 1 ; gene_id "ASXL1--MACROD2^MACROD2^ENSG00000172264.17" ; gene_name MACROD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031919.9" ; havana_transcript "OTTHUMT00000195553.3" ; hgnc_id "HGNC:16126" ; level 2 ; orig_coord_info "chr20,13995764,13995809,+" ; protein_id "ENSP00000217246.4" ; tag basic appris_principal_2 CCDS ; transcript_id "ASXL1--MACROD2^ENST00000217246.8" ; transcript_name "MACROD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
ASXL1--MACROD2 HAVANA mRNA 24700 62216 . + . FI_gene_label "MACROD2^ENSG00000172264.17" ; ID "ASXL1--MACROD2^ENST00000217246.8" ; Parent "ASXL1--MACROD2^MACROD2^ENSG00000172264.17" ; ccdsid "CCDS13120.2" ; exon_id "ENSE00001728314.1" ; exon_number 1 ; gene_id "ASXL1--MACROD2^MACROD2^ENSG00000172264.17" ; gene_name MACROD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031919.9" ; havana_transcript "OTTHUMT00000195553.3" ; hgnc_id "HGNC:16126" ; level 2 ; orig_coord_info "chr20,13995764,13995809,+" ; protein_id "ENSP00000217246.4" ; tag basic appris_principal_2 CCDS ; transcript_id "ASXL1--MACROD2^ENST00000217246.8" ; transcript_name "MACROD2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ASXL1--MACROD2 HAVANA gene 2418 21698 . + . FI_gene_label "ASXL1^ENSG00000171456.20" ; ID "ASXL1--MACROD2^ASXL1^ENSG00000171456.20" ; exon_id "ENSE00001468001.1" ; exon_number 1 ; gene_id "ASXL1--MACROD2^ASXL1^ENSG00000171456.20" ; gene_name ASXL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032218.10" ; havana_transcript "OTTHUMT00000496475.1" ; hgnc_id "HGNC:18318" ; level 2 ; orig_coord_info "chr20,32359747,32359791,+" ; protein_id "ENSP00000305119.5" ; tag basic appris_alternative_2 ; transcript_id "ASXL1--MACROD2^ENST00000306058.9" ; transcript_name "ASXL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ASXL1--MACROD2 HAVANA mRNA 2418 21698 . + . FI_gene_label "ASXL1^ENSG00000171456.20" ; ID "ASXL1--MACROD2^ENST00000306058.9" ; Parent "ASXL1--MACROD2^ASXL1^ENSG00000171456.20" ; exon_id "ENSE00001468001.1" ; exon_number 1 ; gene_id "ASXL1--MACROD2^ASXL1^ENSG00000171456.20" ; gene_name ASXL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032218.10" ; havana_transcript "OTTHUMT00000496475.1" ; hgnc_id "HGNC:18318" ; level 2 ; orig_coord_info "chr20,32359747,32359791,+" ; protein_id "ENSP00000305119.5" ; tag basic appris_alternative_2 ; transcript_id "ASXL1--MACROD2^ENST00000306058.9" ; transcript_name "ASXL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP6V1E1--MIATNB HAVANA gene 1001 11157 . + . FI_gene_label "ATP6V1E1^ENSG00000131100.13" ; ID "ATP6V1E1--MIATNB^ATP6V1E1^ENSG00000131100.13" ; ccdsid "CCDS13745.1" ; exon_id "ENSE00003539390.1" ; exon_number 1 ; gene_id "ATP6V1E1--MIATNB^ATP6V1E1^ENSG00000131100.13" ; gene_name ATP6V1E1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059320.6" ; havana_transcript "OTTHUMT00000131790.4" ; hgnc_id "HGNC:857" ; level 2 ; orig_coord_info "chr22,17628603,17628635,-" ; protein_id "ENSP00000253413.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATP6V1E1--MIATNB^ENST00000253413.10" ; transcript_name "ATP6V1E1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATP6V1E1--MIATNB HAVANA mRNA 1001 11157 . + . FI_gene_label "ATP6V1E1^ENSG00000131100.13" ; ID "ATP6V1E1--MIATNB^ENST00000253413.10" ; Parent "ATP6V1E1--MIATNB^ATP6V1E1^ENSG00000131100.13" ; ccdsid "CCDS13745.1" ; exon_id "ENSE00003539390.1" ; exon_number 1 ; gene_id "ATP6V1E1--MIATNB^ATP6V1E1^ENSG00000131100.13" ; gene_name ATP6V1E1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059320.6" ; havana_transcript "OTTHUMT00000131790.4" ; hgnc_id "HGNC:857" ; level 2 ; orig_coord_info "chr22,17628603,17628635,-" ; protein_id "ENSP00000253413.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ATP6V1E1--MIATNB^ENST00000253413.10" ; transcript_name "ATP6V1E1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATRN--HM13 HAVANA gene 1001 37993 . + . FI_gene_label "ATRN^ENSG00000088812.18" ; ID "ATRN--HM13^ATRN^ENSG00000088812.18" ; ccdsid "CCDS13053.1" ; exon_id "ENSE00001838072.2" ; exon_number 1 ; gene_id "ATRN--HM13^ATRN^ENSG00000088812.18" ; gene_name ATRN ; gene_type protein_coding ; havana_gene "OTTHUMG00000031746.3" ; havana_transcript "OTTHUMT00000077740.3" ; hgnc_id "HGNC:885" ; level 2 ; orig_coord_info "chr20,3471108,3471517,+" ; protein_id "ENSP00000262919.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ATRN--HM13^ENST00000262919.10" ; transcript_name "ATRN-201" ; transcript_support_level 5 ; transcript_type protein_coding
ATRN--HM13 HAVANA mRNA 1001 37993 . + . FI_gene_label "ATRN^ENSG00000088812.18" ; ID "ATRN--HM13^ENST00000262919.10" ; Parent "ATRN--HM13^ATRN^ENSG00000088812.18" ; ccdsid "CCDS13053.1" ; exon_id "ENSE00001838072.2" ; exon_number 1 ; gene_id "ATRN--HM13^ATRN^ENSG00000088812.18" ; gene_name ATRN ; gene_type protein_coding ; havana_gene "OTTHUMG00000031746.3" ; havana_transcript "OTTHUMT00000077740.3" ; hgnc_id "HGNC:885" ; level 2 ; orig_coord_info "chr20,3471108,3471517,+" ; protein_id "ENSP00000262919.5" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ATRN--HM13^ENST00000262919.10" ; transcript_name "ATRN-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
ATRN--HM13 ENSEMBL gene 40994 62203 . + . FI_gene_label "HM13^ENSG00000101294.18" ; ID "ATRN--HM13^HM13^ENSG00000101294.18" ; ccdsid "CCDS13183.1" ; exon_id "ENSE00003840891.1" ; exon_number 1 ; gene_id "ATRN--HM13^HM13^ENSG00000101294.18" ; gene_name HM13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032175.12" ; hgnc_id "HGNC:16435" ; level 3 ; orig_coord_info "chr20,31514552,31514734,+" ; protein_id "ENSP00000335294.5" ; tag basic CCDS ; transcript_id "ATRN--HM13^ENST00000335574.10" ; transcript_name "HM13-201" ; transcript_support_level 1 ; transcript_type protein_coding
ATRN--HM13 ENSEMBL mRNA 40994 62203 . + . FI_gene_label "HM13^ENSG00000101294.18" ; ID "ATRN--HM13^ENST00000335574.10" ; Parent "ATRN--HM13^HM13^ENSG00000101294.18" ; ccdsid "CCDS13183.1" ; exon_id "ENSE00003840891.1" ; exon_number 1 ; gene_id "ATRN--HM13^HM13^ENSG00000101294.18" ; gene_name HM13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032175.12" ; hgnc_id "HGNC:16435" ; level 3 ; orig_coord_info "chr20,31514552,31514734,+" ; protein_id "ENSP00000335294.5" ; tag basic CCDS ; transcript_id "ATRN--HM13^ENST00000335574.10" ; transcript_name "HM13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
B3GNTL1--FOXK2 HAVANA gene 1001 20192 . + . FI_gene_label "B3GNTL1^ENSG00000175711.8" ; ID "B3GNTL1--FOXK2^B3GNTL1^ENSG00000175711.8" ; ccdsid "CCDS32778.1" ; exon_id "ENSE00001463771.1" ; exon_number 1 ; gene_id "B3GNTL1--FOXK2^B3GNTL1^ENSG00000175711.8" ; gene_name B3GNTL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177788.1" ; havana_transcript "OTTHUMT00000438949.1" ; hgnc_id "HGNC:21727" ; level 2 ; orig_coord_info "chr17,83051737,83051796,-" ; protein_id "ENSP00000319979.3" ; tag basic appris_principal_1 CCDS ; transcript_id "B3GNTL1--FOXK2^ENST00000320865.3" ; transcript_name "B3GNTL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
B3GNTL1--FOXK2 HAVANA mRNA 1001 20192 . + . FI_gene_label "B3GNTL1^ENSG00000175711.8" ; ID "B3GNTL1--FOXK2^ENST00000320865.3" ; Parent "B3GNTL1--FOXK2^B3GNTL1^ENSG00000175711.8" ; ccdsid "CCDS32778.1" ; exon_id "ENSE00001463771.1" ; exon_number 1 ; gene_id "B3GNTL1--FOXK2^B3GNTL1^ENSG00000175711.8" ; gene_name B3GNTL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177788.1" ; havana_transcript "OTTHUMT00000438949.1" ; hgnc_id "HGNC:21727" ; level 2 ; orig_coord_info "chr17,83051737,83051796,-" ; protein_id "ENSP00000319979.3" ; tag basic appris_principal_1 CCDS ; transcript_id "B3GNTL1--FOXK2^ENST00000320865.3" ; transcript_name "B3GNTL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
B3GNTL1--FOXK2 HAVANA gene 24740 45508 . + . FI_gene_label "FOXK2^ENSG00000141568.21" ; ID "B3GNTL1--FOXK2^FOXK2^ENSG00000141568.21" ; ccdsid "CCDS11813.1" ; exon_id "ENSE00002142812.2" ; exon_number 1 ; gene_id "B3GNTL1--FOXK2^FOXK2^ENSG00000141568.21" ; gene_name FOXK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140374.7" ; havana_transcript "OTTHUMT00000277099.3" ; hgnc_id "HGNC:6036" ; level 2 ; orig_coord_info "chr17,82519889,82520307,+" ; protein_id "ENSP00000335677.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "B3GNTL1--FOXK2^ENST00000335255.10" ; transcript_name "FOXK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
B3GNTL1--FOXK2 HAVANA mRNA 24740 45508 . + . FI_gene_label "FOXK2^ENSG00000141568.21" ; ID "B3GNTL1--FOXK2^ENST00000335255.10" ; Parent "B3GNTL1--FOXK2^FOXK2^ENSG00000141568.21" ; ccdsid "CCDS11813.1" ; exon_id "ENSE00002142812.2" ; exon_number 1 ; gene_id "B3GNTL1--FOXK2^FOXK2^ENSG00000141568.21" ; gene_name FOXK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000140374.7" ; havana_transcript "OTTHUMT00000277099.3" ; hgnc_id "HGNC:6036" ; level 2 ; orig_coord_info "chr17,82519889,82520307,+" ; protein_id "ENSP00000335677.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "B3GNTL1--FOXK2^ENST00000335255.10" ; transcript_name "FOXK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCL2L13--TOM1 HAVANA gene 2807 17671 . + . FI_gene_label "BCL2L13^ENSG00000099968.18" ; ID "BCL2L13--TOM1^BCL2L13^ENSG00000099968.18" ; ccdsid "CCDS13746.1" ; exon_id "ENSE00003723905.1" ; exon_number 2 ; gene_id "BCL2L13--TOM1^BCL2L13^ENSG00000099968.18" ; gene_name BCL2L13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150088.4" ; havana_transcript "OTTHUMT00000316184.2" ; hgnc_id "HGNC:17164" ; level 2 ; orig_coord_info "chr22,17655712,17655832,+" ; protein_id "ENSP00000318883.5" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "BCL2L13--TOM1^ENST00000317582.10" ; transcript_name "BCL2L13-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCL2L13--TOM1 HAVANA mRNA 2807 17671 . + . FI_gene_label "BCL2L13^ENSG00000099968.18" ; ID "BCL2L13--TOM1^ENST00000317582.10" ; Parent "BCL2L13--TOM1^BCL2L13^ENSG00000099968.18" ; ccdsid "CCDS13746.1" ; exon_id "ENSE00003723905.1" ; exon_number 2 ; gene_id "BCL2L13--TOM1^BCL2L13^ENSG00000099968.18" ; gene_name BCL2L13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150088.4" ; havana_transcript "OTTHUMT00000316184.2" ; hgnc_id "HGNC:17164" ; level 2 ; orig_coord_info "chr22,17655712,17655832,+" ; protein_id "ENSP00000318883.5" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "BCL2L13--TOM1^ENST00000317582.10" ; transcript_name "BCL2L13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCL2L13--TOM1 HAVANA gene 21287 26952 . + . FI_gene_label "TOM1^ENSG00000100284.22" ; ID "BCL2L13--TOM1^TOM1^ENSG00000100284.22" ; exon_id "ENSE00002693336.1" ; exon_number 1 ; gene_id "BCL2L13--TOM1^TOM1^ENSG00000100284.22" ; gene_name TOM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150958.6" ; havana_transcript "OTTHUMT00000320653.1" ; hgnc_id "HGNC:11982" ; level 2 ; orig_coord_info "chr22,35299929,35299980,+" ; protein_id "ENSP00000379085.3" ; transcript_id "BCL2L13--TOM1^ENST00000395736.7" ; transcript_name "TOM1-201" ; transcript_support_level 4 ; transcript_type nonsense_mediated_decay
BCL2L13--TOM1 HAVANA mRNA 21287 26952 . + . FI_gene_label "TOM1^ENSG00000100284.22" ; ID "BCL2L13--TOM1^ENST00000395736.7" ; Parent "BCL2L13--TOM1^TOM1^ENSG00000100284.22" ; exon_id "ENSE00002693336.1" ; exon_number 1 ; gene_id "BCL2L13--TOM1^TOM1^ENSG00000100284.22" ; gene_name TOM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150958.6" ; havana_transcript "OTTHUMT00000320653.1" ; hgnc_id "HGNC:11982" ; level 2 ; orig_coord_info "chr22,35299929,35299980,+" ; protein_id "ENSP00000379085.3" ; transcript_id "BCL2L13--TOM1^ENST00000395736.7" ; transcript_name "TOM1-201" ; transcript_support_level 4 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
BCLAF1--BEND3 ENSEMBL gene 1001 20471 . + . FI_gene_label "BCLAF1^ENSG00000029363.17" ; ID "BCLAF1--BEND3^BCLAF1^ENSG00000029363.17" ; ccdsid "CCDS47486.1" ; exon_id "ENSE00001432201.2" ; exon_number 3 ; gene_id "BCLAF1--BEND3^BCLAF1^ENSG00000029363.17" ; gene_name BCLAF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033323.8" ; hgnc_id "HGNC:16863" ; level 3 ; orig_coord_info "chr6,136279763,136279866,-" ; protein_id "ENSP00000229446.5" ; tag basic CCDS ; transcript_id "BCLAF1--BEND3^ENST00000353331.8" ; transcript_name "BCLAF1-201" ; transcript_support_level 5 ; transcript_type protein_coding
BCLAF1--BEND3 ENSEMBL mRNA 1001 20471 . + . FI_gene_label "BCLAF1^ENSG00000029363.17" ; ID "BCLAF1--BEND3^ENST00000353331.8" ; Parent "BCLAF1--BEND3^BCLAF1^ENSG00000029363.17" ; ccdsid "CCDS47486.1" ; exon_id "ENSE00001432201.2" ; exon_number 3 ; gene_id "BCLAF1--BEND3^BCLAF1^ENSG00000029363.17" ; gene_name BCLAF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033323.8" ; hgnc_id "HGNC:16863" ; level 3 ; orig_coord_info "chr6,136279763,136279866,-" ; protein_id "ENSP00000229446.5" ; tag basic CCDS ; transcript_id "BCLAF1--BEND3^ENST00000353331.8" ; transcript_name "BCLAF1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BCLAF1--BEND3 HAVANA gene 23708 34944 . + . FI_gene_label "BEND3^ENSG00000178409.14" ; ID "BCLAF1--BEND3^BEND3^ENSG00000178409.14" ; ccdsid "CCDS34507.1" ; exon_id "ENSE00001448689.1" ; exon_number 2 ; gene_id "BCLAF1--BEND3^BEND3^ENSG00000178409.14" ; gene_name BEND3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015308.1" ; havana_transcript "OTTHUMT00000041686.1" ; hgnc_id "HGNC:23040" ; level 2 ; orig_coord_info "chr6,107099249,107099285,-" ; protein_id "ENSP00000358038.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BCLAF1--BEND3^ENST00000369042.6" ; transcript_name "BEND3-201" ; transcript_support_level 5 ; transcript_type protein_coding
BCLAF1--BEND3 HAVANA mRNA 23708 34944 . + . FI_gene_label "BEND3^ENSG00000178409.14" ; ID "BCLAF1--BEND3^ENST00000369042.6" ; Parent "BCLAF1--BEND3^BEND3^ENSG00000178409.14" ; ccdsid "CCDS34507.1" ; exon_id "ENSE00001448689.1" ; exon_number 2 ; gene_id "BCLAF1--BEND3^BEND3^ENSG00000178409.14" ; gene_name BEND3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000015308.1" ; havana_transcript "OTTHUMT00000041686.1" ; hgnc_id "HGNC:23040" ; level 2 ; orig_coord_info "chr6,107099249,107099285,-" ; protein_id "ENSP00000358038.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "BCLAF1--BEND3^ENST00000369042.6" ; transcript_name "BEND3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
C1QTNF6--CCDC117 HAVANA gene 17876 25529 . + . FI_gene_label "CCDC117^ENSG00000159873.10" ; ID "C1QTNF6--CCDC117^CCDC117^ENSG00000159873.10" ; ccdsid "CCDS13846.1" ; exon_id "ENSE00003850931.1" ; exon_number 1 ; gene_id "C1QTNF6--CCDC117^CCDC117^ENSG00000159873.10" ; gene_name CCDC117 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151091.3" ; havana_transcript "OTTHUMT00000321258.2" ; hgnc_id "HGNC:26599" ; level 2 ; orig_coord_info "chr22,28772850,28773034,+" ; protein_id "ENSP00000249064.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C1QTNF6--CCDC117^ENST00000249064.9" ; transcript_name "CCDC117-201" ; transcript_support_level 1 ; transcript_type protein_coding
C1QTNF6--CCDC117 HAVANA mRNA 17876 25529 . + . FI_gene_label "CCDC117^ENSG00000159873.10" ; ID "C1QTNF6--CCDC117^ENST00000249064.9" ; Parent "C1QTNF6--CCDC117^CCDC117^ENSG00000159873.10" ; ccdsid "CCDS13846.1" ; exon_id "ENSE00003850931.1" ; exon_number 1 ; gene_id "C1QTNF6--CCDC117^CCDC117^ENSG00000159873.10" ; gene_name CCDC117 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151091.3" ; havana_transcript "OTTHUMT00000321258.2" ; hgnc_id "HGNC:26599" ; level 2 ; orig_coord_info "chr22,28772850,28773034,+" ; protein_id "ENSP00000249064.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C1QTNF6--CCDC117^ENST00000249064.9" ; transcript_name "CCDC117-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C1QTNF6--CCDC117 HAVANA gene 8398 14854 . + . FI_gene_label "C1QTNF6^ENSG00000133466.14" ; ID "C1QTNF6--CCDC117^C1QTNF6^ENSG00000133466.14" ; ccdsid "CCDS13943.1" ; exon_id "ENSE00001185703.5" ; exon_number 1 ; gene_id "C1QTNF6--CCDC117^C1QTNF6^ENSG00000133466.14" ; gene_name C1QTNF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150538.2" ; havana_transcript "OTTHUMT00000318807.2" ; hgnc_id "HGNC:14343" ; level 2 ; orig_coord_info "chr22,37188163,37188213,-" ; protein_id "ENSP00000338812.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C1QTNF6--CCDC117^ENST00000337843.7" ; transcript_name "C1QTNF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
C1QTNF6--CCDC117 HAVANA mRNA 8398 14854 . + . FI_gene_label "C1QTNF6^ENSG00000133466.14" ; ID "C1QTNF6--CCDC117^ENST00000337843.7" ; Parent "C1QTNF6--CCDC117^C1QTNF6^ENSG00000133466.14" ; ccdsid "CCDS13943.1" ; exon_id "ENSE00001185703.5" ; exon_number 1 ; gene_id "C1QTNF6--CCDC117^C1QTNF6^ENSG00000133466.14" ; gene_name C1QTNF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150538.2" ; havana_transcript "OTTHUMT00000318807.2" ; hgnc_id "HGNC:14343" ; level 2 ; orig_coord_info "chr22,37188163,37188213,-" ; protein_id "ENSP00000338812.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C1QTNF6--CCDC117^ENST00000337843.7" ; transcript_name "C1QTNF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C1QTNF6--HSCB HAVANA gene 17855 24152 . + . FI_gene_label "HSCB^ENSG00000100209.11" ; ID "C1QTNF6--HSCB^HSCB^ENSG00000100209.11" ; ccdsid "CCDS13845.1" ; exon_id "ENSE00001048167.2" ; exon_number 1 ; gene_id "C1QTNF6--HSCB^HSCB^ENSG00000100209.11" ; gene_name HSCB ; gene_type protein_coding ; havana_gene "OTTHUMG00000151092.2" ; havana_transcript "OTTHUMT00000321263.2" ; hgnc_id "HGNC:28913" ; level 2 ; orig_coord_info "chr22,28742096,28742331,+" ; protein_id "ENSP00000216027.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C1QTNF6--HSCB^ENST00000216027.8" ; transcript_name "HSCB-201" ; transcript_support_level 1 ; transcript_type protein_coding
C1QTNF6--HSCB HAVANA mRNA 17855 24152 . + . FI_gene_label "HSCB^ENSG00000100209.11" ; ID "C1QTNF6--HSCB^ENST00000216027.8" ; Parent "C1QTNF6--HSCB^HSCB^ENSG00000100209.11" ; ccdsid "CCDS13845.1" ; exon_id "ENSE00001048167.2" ; exon_number 1 ; gene_id "C1QTNF6--HSCB^HSCB^ENSG00000100209.11" ; gene_name HSCB ; gene_type protein_coding ; havana_gene "OTTHUMG00000151092.2" ; havana_transcript "OTTHUMT00000321263.2" ; hgnc_id "HGNC:28913" ; level 2 ; orig_coord_info "chr22,28742096,28742331,+" ; protein_id "ENSP00000216027.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C1QTNF6--HSCB^ENST00000216027.8" ; transcript_name "HSCB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C1QTNF6--HSCB HAVANA gene 8398 14854 . + . FI_gene_label "C1QTNF6^ENSG00000133466.14" ; ID "C1QTNF6--HSCB^C1QTNF6^ENSG00000133466.14" ; ccdsid "CCDS13943.1" ; exon_id "ENSE00001185703.5" ; exon_number 1 ; gene_id "C1QTNF6--HSCB^C1QTNF6^ENSG00000133466.14" ; gene_name C1QTNF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150538.2" ; havana_transcript "OTTHUMT00000318807.2" ; hgnc_id "HGNC:14343" ; level 2 ; orig_coord_info "chr22,37188163,37188213,-" ; protein_id "ENSP00000338812.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C1QTNF6--HSCB^ENST00000337843.7" ; transcript_name "C1QTNF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
C1QTNF6--HSCB HAVANA mRNA 8398 14854 . + . FI_gene_label "C1QTNF6^ENSG00000133466.14" ; ID "C1QTNF6--HSCB^ENST00000337843.7" ; Parent "C1QTNF6--HSCB^C1QTNF6^ENSG00000133466.14" ; ccdsid "CCDS13943.1" ; exon_id "ENSE00001185703.5" ; exon_number 1 ; gene_id "C1QTNF6--HSCB^C1QTNF6^ENSG00000133466.14" ; gene_name C1QTNF6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150538.2" ; havana_transcript "OTTHUMT00000318807.2" ; hgnc_id "HGNC:14343" ; level 2 ; orig_coord_info "chr22,37188163,37188213,-" ; protein_id "ENSP00000338812.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "C1QTNF6--HSCB^ENST00000337843.7" ; transcript_name "C1QTNF6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 1027 13795 . + . FI_gene_label "CCDC169^ENSG00000242715.8" ; ID "CCDC169--SOHLH2^ENST00000239859.8" ; Parent "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; ccdsid "CCDS45028.1" ; exon_id "ENSE00003461130.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^CCDC169^ENSG00000242715.8" ; gene_name CCDC169 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016731.4" ; havana_transcript "OTTHUMT00000368255.2" ; hgnc_id "HGNC:34361" ; level 2 ; orig_coord_info "chr13,36297637,36297719,-" ; protein_id "ENSP00000239859.7" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000239859.8" ; transcript_name "CCDC169-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CCDC169--SOHLH2 HAVANA gene 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC169--SOHLH2 HAVANA mRNA 23170 30158 . + . FI_gene_label "SOHLH2^ENSG00000120669.16" ; ID "CCDC169--SOHLH2^ENST00000317764.6" ; Parent "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; ccdsid "CCDS61309.1" ; exon_id "ENSE00001482819.2" ; exon_number 1 ; gene_id "CCDC169--SOHLH2^SOHLH2^ENSG00000120669.16" ; gene_name SOHLH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016728.4" ; havana_transcript "OTTHUMT00000368257.1" ; hgnc_id "HGNC:26026" ; level 1 ; orig_coord_info "chr13,36214479,36214526,-" ; protein_id "ENSP00000326838.6" ; tag basic exp_conf CCDS ; transcript_id "CCDC169--SOHLH2^ENST00000317764.6" ; transcript_name "SOHLH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCSER2--ZNF365 HAVANA gene 1078 24057 . + . FI_gene_label "CCSER2^ENSG00000107771.17" ; ID "CCSER2--ZNF365^CCSER2^ENSG00000107771.17" ; ccdsid "CCDS31235.1" ; exon_id "ENSE00001795795.1" ; exon_number 2 ; gene_id "CCSER2--ZNF365^CCSER2^ENSG00000107771.17" ; gene_name CCSER2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018641.4" ; havana_transcript "OTTHUMT00000049132.3" ; hgnc_id "HGNC:29197" ; level 2 ; orig_coord_info "chr10,84371053,84372469,+" ; protein_id "ENSP00000224756.8" ; tag basic appris_alternative_1 CCDS ; transcript_id "CCSER2--ZNF365^ENST00000224756.12" ; transcript_name "CCSER2-201" ; transcript_support_level 5 ; transcript_type protein_coding
CCSER2--ZNF365 HAVANA mRNA 1078 24057 . + . FI_gene_label "CCSER2^ENSG00000107771.17" ; ID "CCSER2--ZNF365^ENST00000224756.12" ; Parent "CCSER2--ZNF365^CCSER2^ENSG00000107771.17" ; ccdsid "CCDS31235.1" ; exon_id "ENSE00001795795.1" ; exon_number 2 ; gene_id "CCSER2--ZNF365^CCSER2^ENSG00000107771.17" ; gene_name CCSER2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018641.4" ; havana_transcript "OTTHUMT00000049132.3" ; hgnc_id "HGNC:29197" ; level 2 ; orig_coord_info "chr10,84371053,84372469,+" ; protein_id "ENSP00000224756.8" ; tag basic appris_alternative_1 CCDS ; transcript_id "CCSER2--ZNF365^ENST00000224756.12" ; transcript_name "CCSER2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CCSER2--ZNF365 HAVANA gene 27239 35613 . + . FI_gene_label "ZNF365^ENSG00000138311.18" ; ID "CCSER2--ZNF365^ZNF365^ENSG00000138311.18" ; ccdsid "CCDS31209.1" ; exon_id "ENSE00001312443.2" ; exon_number 2 ; gene_id "CCSER2--ZNF365^ZNF365^ENSG00000138311.18" ; gene_name ZNF365 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192644.2" ; havana_transcript "OTTHUMT00000048238.3" ; hgnc_id "HGNC:18194" ; level 2 ; orig_coord_info "chr10,62376194,62376936,+" ; protein_id "ENSP00000378674.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CCSER2--ZNF365^ENST00000395254.8" ; transcript_name "ZNF365-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCSER2--ZNF365 HAVANA mRNA 27239 35613 . + . FI_gene_label "ZNF365^ENSG00000138311.18" ; ID "CCSER2--ZNF365^ENST00000395254.8" ; Parent "CCSER2--ZNF365^ZNF365^ENSG00000138311.18" ; ccdsid "CCDS31209.1" ; exon_id "ENSE00001312443.2" ; exon_number 2 ; gene_id "CCSER2--ZNF365^ZNF365^ENSG00000138311.18" ; gene_name ZNF365 ; gene_type protein_coding ; havana_gene "OTTHUMG00000192644.2" ; havana_transcript "OTTHUMT00000048238.3" ; hgnc_id "HGNC:18194" ; level 2 ; orig_coord_info "chr10,62376194,62376936,+" ; protein_id "ENSP00000378674.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CCSER2--ZNF365^ENST00000395254.8" ; transcript_name "ZNF365-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CECR2--PSLNR ENSEMBL gene 2598 26272 . + . FI_gene_label "CECR2^ENSG00000099954.18" ; ID "CECR2--PSLNR^CECR2^ENSG00000099954.18" ; exon_id "ENSE00003472152.1" ; exon_number 4 ; gene_id "CECR2--PSLNR^CECR2^ENSG00000099954.18" ; gene_name CECR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150072.9" ; hgnc_id "HGNC:1840" ; level 3 ; orig_coord_info "chr22,17499494,17499549,+" ; protein_id "ENSP00000262608.10" ; tag basic appris_alternative_2 ; transcript_id "CECR2--PSLNR^ENST00000262608.12" ; transcript_name "CECR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CECR2--PSLNR ENSEMBL mRNA 2598 26272 . + . FI_gene_label "CECR2^ENSG00000099954.18" ; ID "CECR2--PSLNR^ENST00000262608.12" ; Parent "CECR2--PSLNR^CECR2^ENSG00000099954.18" ; exon_id "ENSE00003472152.1" ; exon_number 4 ; gene_id "CECR2--PSLNR^CECR2^ENSG00000099954.18" ; gene_name CECR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150072.9" ; hgnc_id "HGNC:1840" ; level 3 ; orig_coord_info "chr22,17499494,17499549,+" ; protein_id "ENSP00000262608.10" ; tag basic appris_alternative_2 ; transcript_id "CECR2--PSLNR^ENST00000262608.12" ; transcript_name "CECR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DIP2C--AC013287.1 HAVANA gene 1001 45019 . + . FI_gene_label "DIP2C^ENSG00000151240.17" ; ID "DIP2C--AC013287.1^DIP2C^ENSG00000151240.17" ; ccdsid "CCDS7054.1" ; exon_id "ENSE00001710343.2" ; exon_number 1 ; gene_id "DIP2C--AC013287.1^DIP2C^ENSG00000151240.17" ; gene_name DIP2C ; gene_type protein_coding ; havana_gene "OTTHUMG00000017532.6" ; havana_transcript "OTTHUMT00000046389.3" ; hgnc_id "HGNC:29150" ; level 2 ; orig_coord_info "chr10,689494,689578,-" ; protein_id "ENSP00000280886.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DIP2C--AC013287.1^ENST00000280886.12" ; transcript_name "DIP2C-201" ; transcript_support_level 1 ; transcript_type protein_coding
DIP2C--AC013287.1 HAVANA mRNA 1001 45019 . + . FI_gene_label "DIP2C^ENSG00000151240.17" ; ID "DIP2C--AC013287.1^ENST00000280886.12" ; Parent "DIP2C--AC013287.1^DIP2C^ENSG00000151240.17" ; ccdsid "CCDS7054.1" ; exon_id "ENSE00001710343.2" ; exon_number 1 ; gene_id "DIP2C--AC013287.1^DIP2C^ENSG00000151240.17" ; gene_name DIP2C ; gene_type protein_coding ; havana_gene "OTTHUMG00000017532.6" ; havana_transcript "OTTHUMT00000046389.3" ; hgnc_id "HGNC:29150" ; level 2 ; orig_coord_info "chr10,689494,689578,-" ; protein_id "ENSP00000280886.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DIP2C--AC013287.1^ENST00000280886.12" ; transcript_name "DIP2C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DLG5--AC069540.2 HAVANA gene 1001 37468 . + . FI_gene_label "DLG5^ENSG00000151208.17" ; ID "DLG5--AC069540.2^DLG5^ENSG00000151208.17" ; ccdsid "CCDS7353.2" ; exon_id "ENSE00001942599.2" ; exon_number 1 ; gene_id "DLG5--AC069540.2^DLG5^ENSG00000151208.17" ; gene_name DLG5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018548.5" ; havana_transcript "OTTHUMT00000048900.3" ; hgnc_id "HGNC:2904" ; level 2 ; orig_coord_info "chr10,77926217,77926520,-" ; protein_id "ENSP00000361467.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DLG5--AC069540.2^ENST00000372391.7" ; transcript_name "DLG5-201" ; transcript_support_level 1 ; transcript_type protein_coding
DLG5--AC069540.2 HAVANA mRNA 1001 37468 . + . FI_gene_label "DLG5^ENSG00000151208.17" ; ID "DLG5--AC069540.2^ENST00000372391.7" ; Parent "DLG5--AC069540.2^DLG5^ENSG00000151208.17" ; ccdsid "CCDS7353.2" ; exon_id "ENSE00001942599.2" ; exon_number 1 ; gene_id "DLG5--AC069540.2^DLG5^ENSG00000151208.17" ; gene_name DLG5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018548.5" ; havana_transcript "OTTHUMT00000048900.3" ; hgnc_id "HGNC:2904" ; level 2 ; orig_coord_info "chr10,77926217,77926520,-" ; protein_id "ENSP00000361467.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "DLG5--AC069540.2^ENST00000372391.7" ; transcript_name "DLG5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FGFR3--TACC3 HAVANA gene 1020 10219 . + . FI_gene_label "FGFR3^ENSG00000068078.20" ; ID "FGFR3--TACC3^FGFR3^ENSG00000068078.20" ; exon_id "ENSE00001596390.1" ; exon_number 2 ; gene_id "FGFR3--TACC3^FGFR3^ENSG00000068078.20" ; gene_name FGFR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000121148.7" ; havana_transcript "OTTHUMT00000495785.1" ; hgnc_id "HGNC:3690" ; level 2 ; orig_coord_info "chr4,1793935,1794043,+" ; protein_id "ENSP00000260795.3" ; transcript_id "FGFR3--TACC3^ENST00000260795.8" ; transcript_name "FGFR3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
FGFR3--TACC3 HAVANA mRNA 1020 10219 . + . FI_gene_label "FGFR3^ENSG00000068078.20" ; ID "FGFR3--TACC3^ENST00000260795.8" ; Parent "FGFR3--TACC3^FGFR3^ENSG00000068078.20" ; exon_id "ENSE00001596390.1" ; exon_number 2 ; gene_id "FGFR3--TACC3^FGFR3^ENSG00000068078.20" ; gene_name FGFR3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000121148.7" ; havana_transcript "OTTHUMT00000495785.1" ; hgnc_id "HGNC:3690" ; level 2 ; orig_coord_info "chr4,1793935,1794043,+" ; protein_id "ENSP00000260795.3" ; transcript_id "FGFR3--TACC3^ENST00000260795.8" ; transcript_name "FGFR3-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
FGFR3--TACC3 HAVANA gene 16535 31742 . + . FI_gene_label "TACC3^ENSG00000013810.20" ; ID "FGFR3--TACC3^TACC3^ENSG00000013810.20" ; ccdsid "CCDS3352.1" ; exon_id "ENSE00003597099.1" ; exon_number 2 ; gene_id "FGFR3--TACC3^TACC3^ENSG00000013810.20" ; gene_name TACC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000089535.25" ; havana_transcript "OTTHUMT00000203730.4" ; hgnc_id "HGNC:11524" ; level 2 ; orig_coord_info "chr4,1723422,1723583,+" ; protein_id "ENSP00000326550.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "FGFR3--TACC3^ENST00000313288.9" ; transcript_name "TACC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
FGFR3--TACC3 HAVANA mRNA 16535 31742 . + . FI_gene_label "TACC3^ENSG00000013810.20" ; ID "FGFR3--TACC3^ENST00000313288.9" ; Parent "FGFR3--TACC3^TACC3^ENSG00000013810.20" ; ccdsid "CCDS3352.1" ; exon_id "ENSE00003597099.1" ; exon_number 2 ; gene_id "FGFR3--TACC3^TACC3^ENSG00000013810.20" ; gene_name TACC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000089535.25" ; havana_transcript "OTTHUMT00000203730.4" ; hgnc_id "HGNC:11524" ; level 2 ; orig_coord_info "chr4,1723422,1723583,+" ; protein_id "ENSP00000326550.4" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "FGFR3--TACC3^ENST00000313288.9" ; transcript_name "TACC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GATD1--CHID1 HAVANA gene 1002 10730 . + . FI_gene_label "GATD1^ENSG00000177225.17" ; ID "GATD1--CHID1^GATD1^ENSG00000177225.17" ; ccdsid "CCDS7713.1" ; exon_id "ENSE00003512199.1" ; exon_number 1 ; gene_id "GATD1--CHID1^GATD1^ENSG00000177225.17" ; gene_name GATD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133315.8" ; havana_transcript "OTTHUMT00000258051.3" ; hgnc_id "HGNC:26616" ; level 2 ; orig_coord_info "chr11,777399,777462,-" ; protein_id "ENSP00000321691.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GATD1--CHID1^ENST00000319863.13" ; transcript_name "GATD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GATD1--CHID1 HAVANA mRNA 1002 10730 . + . FI_gene_label "GATD1^ENSG00000177225.17" ; ID "GATD1--CHID1^ENST00000319863.13" ; Parent "GATD1--CHID1^GATD1^ENSG00000177225.17" ; ccdsid "CCDS7713.1" ; exon_id "ENSE00003512199.1" ; exon_number 1 ; gene_id "GATD1--CHID1^GATD1^ENSG00000177225.17" ; gene_name GATD1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133315.8" ; havana_transcript "OTTHUMT00000258051.3" ; hgnc_id "HGNC:26616" ; level 2 ; orig_coord_info "chr11,777399,777462,-" ; protein_id "ENSP00000321691.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GATD1--CHID1^ENST00000319863.13" ; transcript_name "GATD1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GATD1--CHID1 HAVANA gene 15513 32507 . + . FI_gene_label "CHID1^ENSG00000177830.18" ; ID "GATD1--CHID1^CHID1^ENSG00000177830.18" ; ccdsid "CCDS7722.1" ; exon_id "ENSE00003657827.1" ; exon_number 2 ; gene_id "GATD1--CHID1^CHID1^ENSG00000177830.18" ; gene_name CHID1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133314.6" ; havana_transcript "OTTHUMT00000257112.3" ; hgnc_id "HGNC:28474" ; level 2 ; orig_coord_info "chr11,904706,904816,-" ; protein_id "ENSP00000325055.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GATD1--CHID1^ENST00000323578.13" ; transcript_name "CHID1-201" ; transcript_support_level 1 ; transcript_type protein_coding
GATD1--CHID1 HAVANA mRNA 15513 32507 . + . FI_gene_label "CHID1^ENSG00000177830.18" ; ID "GATD1--CHID1^ENST00000323578.13" ; Parent "GATD1--CHID1^CHID1^ENSG00000177830.18" ; ccdsid "CCDS7722.1" ; exon_id "ENSE00003657827.1" ; exon_number 2 ; gene_id "GATD1--CHID1^CHID1^ENSG00000177830.18" ; gene_name CHID1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133314.6" ; havana_transcript "OTTHUMT00000257112.3" ; hgnc_id "HGNC:28474" ; level 2 ; orig_coord_info "chr11,904706,904816,-" ; protein_id "ENSP00000325055.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "GATD1--CHID1^ENST00000323578.13" ; transcript_name "CHID1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GDA--CD24P4 ENSEMBL gene 2240 24983 . + . FI_gene_label "GDA^ENSG00000119125.17" ; ID "GDA--CD24P4^GDA^ENSG00000119125.17" ; ccdsid "CCDS56576.1" ; exon_id "ENSE00002176037.2" ; exon_number 1 ; gene_id "GDA--CD24P4^GDA^ENSG00000119125.17" ; gene_name GDA ; gene_type protein_coding ; havana_gene "OTTHUMG00000020005.4" ; hgnc_id "HGNC:4212" ; level 3 ; orig_coord_info "chr9,72149560,72149682,+" ; protein_id "ENSP00000238018.4" ; tag basic CCDS ; transcript_id "GDA--CD24P4^ENST00000238018.8" ; transcript_name "GDA-201" ; transcript_support_level 1 ; transcript_type protein_coding
GDA--CD24P4 ENSEMBL mRNA 2240 24983 . + . FI_gene_label "GDA^ENSG00000119125.17" ; ID "GDA--CD24P4^ENST00000238018.8" ; Parent "GDA--CD24P4^GDA^ENSG00000119125.17" ; ccdsid "CCDS56576.1" ; exon_id "ENSE00002176037.2" ; exon_number 1 ; gene_id "GDA--CD24P4^GDA^ENSG00000119125.17" ; gene_name GDA ; gene_type protein_coding ; havana_gene "OTTHUMG00000020005.4" ; hgnc_id "HGNC:4212" ; level 3 ; orig_coord_info "chr9,72149560,72149682,+" ; protein_id "ENSP00000238018.4" ; tag basic CCDS ; transcript_id "GDA--CD24P4^ENST00000238018.8" ; transcript_name "GDA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HIC2--MAPK1 HAVANA gene 14288 27736 . + . FI_gene_label "MAPK1^ENSG00000100030.15" ; ID "HIC2--MAPK1^MAPK1^ENSG00000100030.15" ; ccdsid "CCDS13795.1" ; exon_id "ENSE00001838512.2" ; exon_number 1 ; gene_id "HIC2--MAPK1^MAPK1^ENSG00000100030.15" ; gene_name MAPK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030508.2" ; havana_transcript "OTTHUMT00000075396.2" ; hgnc_id "HGNC:6871" ; level 1 ; orig_coord_info "chr22,21867322,21867440,-" ; protein_id "ENSP00000215832.7" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "HIC2--MAPK1^ENST00000215832.11" ; transcript_name "MAPK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
HIC2--MAPK1 HAVANA mRNA 14288 27736 . + . FI_gene_label "MAPK1^ENSG00000100030.15" ; ID "HIC2--MAPK1^ENST00000215832.11" ; Parent "HIC2--MAPK1^MAPK1^ENSG00000100030.15" ; ccdsid "CCDS13795.1" ; exon_id "ENSE00001838512.2" ; exon_number 1 ; gene_id "HIC2--MAPK1^MAPK1^ENSG00000100030.15" ; gene_name MAPK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030508.2" ; havana_transcript "OTTHUMT00000075396.2" ; hgnc_id "HGNC:6871" ; level 1 ; orig_coord_info "chr22,21867322,21867440,-" ; protein_id "ENSP00000215832.7" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "HIC2--MAPK1^ENST00000215832.11" ; transcript_name "MAPK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HIC2--MAPK1 HAVANA gene 1001 11252 . + . FI_gene_label "HIC2^ENSG00000169635.10" ; ID "HIC2--MAPK1^HIC2^ENSG00000169635.10" ; ccdsid "CCDS13789.1" ; exon_id "ENSE00001385660.1" ; exon_number 2 ; gene_id "HIC2--MAPK1^HIC2^ENSG00000169635.10" ; gene_name HIC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150781.4" ; havana_transcript "OTTHUMT00000320117.3" ; hgnc_id "HGNC:18595" ; level 2 ; orig_coord_info "chr22,21442832,21442857,+" ; protein_id "ENSP00000385319.2" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "HIC2--MAPK1^ENST00000407464.7" ; transcript_name "HIC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
HIC2--MAPK1 HAVANA mRNA 1001 11252 . + . FI_gene_label "HIC2^ENSG00000169635.10" ; ID "HIC2--MAPK1^ENST00000407464.7" ; Parent "HIC2--MAPK1^HIC2^ENSG00000169635.10" ; ccdsid "CCDS13789.1" ; exon_id "ENSE00001385660.1" ; exon_number 2 ; gene_id "HIC2--MAPK1^HIC2^ENSG00000169635.10" ; gene_name HIC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150781.4" ; havana_transcript "OTTHUMT00000320117.3" ; hgnc_id "HGNC:18595" ; level 2 ; orig_coord_info "chr22,21442832,21442857,+" ; protein_id "ENSP00000385319.2" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "HIC2--MAPK1^ENST00000407464.7" ; transcript_name "HIC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HPS4--SLC5A4 HAVANA gene 27322 43350 . + . FI_gene_label "SLC5A4^ENSG00000100191.6" ; ID "HPS4--SLC5A4^SLC5A4^ENSG00000100191.6" ; ccdsid "CCDS13903.1" ; exon_id "ENSE00000911207.5" ; exon_number 1 ; gene_id "HPS4--SLC5A4^SLC5A4^ENSG00000100191.6" ; gene_name SLC5A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150007.2" ; havana_transcript "OTTHUMT00000315724.2" ; hgnc_id "HGNC:11039" ; level 2 ; orig_coord_info "chr22,32255195,32255329,-" ; protein_id "ENSP00000266086.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HPS4--SLC5A4^ENST00000266086.6" ; transcript_name "SLC5A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
HPS4--SLC5A4 HAVANA mRNA 27322 43350 . + . FI_gene_label "SLC5A4^ENSG00000100191.6" ; ID "HPS4--SLC5A4^ENST00000266086.6" ; Parent "HPS4--SLC5A4^SLC5A4^ENSG00000100191.6" ; ccdsid "CCDS13903.1" ; exon_id "ENSE00000911207.5" ; exon_number 1 ; gene_id "HPS4--SLC5A4^SLC5A4^ENSG00000100191.6" ; gene_name SLC5A4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150007.2" ; havana_transcript "OTTHUMT00000315724.2" ; hgnc_id "HGNC:11039" ; level 2 ; orig_coord_info "chr22,32255195,32255329,-" ; protein_id "ENSP00000266086.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "HPS4--SLC5A4^ENST00000266086.6" ; transcript_name "SLC5A4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
HPS4--SLC5A4 HAVANA gene 1043 20848 . + . FI_gene_label "HPS4^ENSG00000100099.21" ; ID "HPS4--SLC5A4^HPS4^ENSG00000100099.21" ; ccdsid "CCDS13835.1" ; exon_id "ENSE00003582763.1" ; exon_number 2 ; gene_id "HPS4--SLC5A4^HPS4^ENSG00000100099.21" ; gene_name HPS4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030459.8" ; havana_transcript "OTTHUMT00000320779.2" ; hgnc_id "HGNC:15844" ; level 2 ; orig_coord_info "chr22,26481722,26481762,-" ; protein_id "ENSP00000338457.5" ; tag basic appris_principal_4 CCDS ; transcript_id "HPS4--SLC5A4^ENST00000336873.9" ; transcript_name "HPS4-201" ; transcript_support_level 5 ; transcript_type protein_coding
HPS4--SLC5A4 HAVANA mRNA 1043 20848 . + . FI_gene_label "HPS4^ENSG00000100099.21" ; ID "HPS4--SLC5A4^ENST00000336873.9" ; Parent "HPS4--SLC5A4^HPS4^ENSG00000100099.21" ; ccdsid "CCDS13835.1" ; exon_id "ENSE00003582763.1" ; exon_number 2 ; gene_id "HPS4--SLC5A4^HPS4^ENSG00000100099.21" ; gene_name HPS4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030459.8" ; havana_transcript "OTTHUMT00000320779.2" ; hgnc_id "HGNC:15844" ; level 2 ; orig_coord_info "chr22,26481722,26481762,-" ; protein_id "ENSP00000338457.5" ; tag basic appris_principal_4 CCDS ; transcript_id "HPS4--SLC5A4^ENST00000336873.9" ; transcript_name "HPS4-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
MAPRE1--DNMT3B HAVANA gene 13878 35038 . + . FI_gene_label "DNMT3B^ENSG00000088305.18" ; ID "MAPRE1--DNMT3B^DNMT3B^ENSG00000088305.18" ; ccdsid "CCDS13204.1" ; exon_id "ENSE00001301654.2" ; exon_number 1 ; gene_id "MAPRE1--DNMT3B^DNMT3B^ENSG00000088305.18" ; gene_name DNMT3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000032226.4" ; havana_transcript "OTTHUMT00000257075.2" ; hgnc_id "HGNC:2979" ; level 2 ; orig_coord_info "chr20,32780116,32780145,+" ; protein_id "ENSP00000201963.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "MAPRE1--DNMT3B^ENST00000201963.3" ; transcript_name "DNMT3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAPRE1--DNMT3B HAVANA mRNA 13878 35038 . + . FI_gene_label "DNMT3B^ENSG00000088305.18" ; ID "MAPRE1--DNMT3B^ENST00000201963.3" ; Parent "MAPRE1--DNMT3B^DNMT3B^ENSG00000088305.18" ; ccdsid "CCDS13204.1" ; exon_id "ENSE00001301654.2" ; exon_number 1 ; gene_id "MAPRE1--DNMT3B^DNMT3B^ENSG00000088305.18" ; gene_name DNMT3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000032226.4" ; havana_transcript "OTTHUMT00000257075.2" ; hgnc_id "HGNC:2979" ; level 2 ; orig_coord_info "chr20,32780116,32780145,+" ; protein_id "ENSP00000201963.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "MAPRE1--DNMT3B^ENST00000201963.3" ; transcript_name "DNMT3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAPRE1--DNMT3B HAVANA gene 1001 9562 . + . FI_gene_label "MAPRE1^ENSG00000101367.9" ; ID "MAPRE1--DNMT3B^MAPRE1^ENSG00000101367.9" ; ccdsid "CCDS13208.1" ; exon_id "ENSE00001467571.1" ; exon_number 2 ; gene_id "MAPRE1--DNMT3B^MAPRE1^ENSG00000101367.9" ; gene_name MAPRE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032228.3" ; havana_transcript "OTTHUMT00000078647.3" ; hgnc_id "HGNC:6890" ; level 2 ; orig_coord_info "chr20,32825928,32826048,+" ; protein_id "ENSP00000364721.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAPRE1--DNMT3B^ENST00000375571.6" ; transcript_name "MAPRE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAPRE1--DNMT3B HAVANA mRNA 1001 9562 . + . FI_gene_label "MAPRE1^ENSG00000101367.9" ; ID "MAPRE1--DNMT3B^ENST00000375571.6" ; Parent "MAPRE1--DNMT3B^MAPRE1^ENSG00000101367.9" ; ccdsid "CCDS13208.1" ; exon_id "ENSE00001467571.1" ; exon_number 2 ; gene_id "MAPRE1--DNMT3B^MAPRE1^ENSG00000101367.9" ; gene_name MAPRE1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032228.3" ; havana_transcript "OTTHUMT00000078647.3" ; hgnc_id "HGNC:6890" ; level 2 ; orig_coord_info "chr20,32825928,32826048,+" ; protein_id "ENSP00000364721.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAPRE1--DNMT3B^ENST00000375571.6" ; transcript_name "MAPRE1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MCM5--CPT1B HAVANA gene 1007 20834 . + . FI_gene_label "MCM5^ENSG00000100297.16" ; ID "MCM5--CPT1B^MCM5^ENSG00000100297.16" ; ccdsid "CCDS13915.1" ; exon_id "ENSE00002704414.1" ; exon_number 2 ; gene_id "MCM5--CPT1B^MCM5^ENSG00000100297.16" ; gene_name MCM5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150961.19" ; havana_transcript "OTTHUMT00000320661.4" ; hgnc_id "HGNC:6948" ; level 2 ; orig_coord_info "chr22,35400439,35400605,+" ; protein_id "ENSP00000216122.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MCM5--CPT1B^ENST00000216122.9" ; transcript_name "MCM5-201" ; transcript_support_level 1 ; transcript_type protein_coding
MCM5--CPT1B HAVANA mRNA 1007 20834 . + . FI_gene_label "MCM5^ENSG00000100297.16" ; ID "MCM5--CPT1B^ENST00000216122.9" ; Parent "MCM5--CPT1B^MCM5^ENSG00000100297.16" ; ccdsid "CCDS13915.1" ; exon_id "ENSE00002704414.1" ; exon_number 2 ; gene_id "MCM5--CPT1B^MCM5^ENSG00000100297.16" ; gene_name MCM5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150961.19" ; havana_transcript "OTTHUMT00000320661.4" ; hgnc_id "HGNC:6948" ; level 2 ; orig_coord_info "chr22,35400439,35400605,+" ; protein_id "ENSP00000216122.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MCM5--CPT1B^ENST00000216122.9" ; transcript_name "MCM5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MCM5--CPT1B HAVANA gene 23873 33387 . + . FI_gene_label "CPT1B^ENSG00000205560.13" ; ID "MCM5--CPT1B^CPT1B^ENSG00000205560.13" ; ccdsid "CCDS14098.1" ; exon_id "ENSE00003561484.1" ; exon_number 2 ; gene_id "MCM5--CPT1B^CPT1B^ENSG00000205560.13" ; gene_name CPT1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000137390.12" ; havana_transcript "OTTHUMT00000317420.3" ; hgnc_id "HGNC:2329" ; level 2 ; orig_coord_info "chr22,50577775,50577915,-" ; protein_id "ENSP00000312189.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MCM5--CPT1B^ENST00000312108.12" ; transcript_name "CPT1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
MCM5--CPT1B HAVANA mRNA 23873 33387 . + . FI_gene_label "CPT1B^ENSG00000205560.13" ; ID "MCM5--CPT1B^ENST00000312108.12" ; Parent "MCM5--CPT1B^CPT1B^ENSG00000205560.13" ; ccdsid "CCDS14098.1" ; exon_id "ENSE00003561484.1" ; exon_number 2 ; gene_id "MCM5--CPT1B^CPT1B^ENSG00000205560.13" ; gene_name CPT1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000137390.12" ; havana_transcript "OTTHUMT00000317420.3" ; hgnc_id "HGNC:2329" ; level 2 ; orig_coord_info "chr22,50577775,50577915,-" ; protein_id "ENSP00000312189.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MCM5--CPT1B^ENST00000312108.12" ; transcript_name "CPT1B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MICALL1--LINC02885 HAVANA gene 1641 20432 . + . FI_gene_label "MICALL1^ENSG00000100139.14" ; ID "MICALL1--LINC02885^MICALL1^ENSG00000100139.14" ; ccdsid "CCDS13961.1" ; exon_id "ENSE00001945112.1" ; exon_number 1 ; gene_id "MICALL1--LINC02885^MICALL1^ENSG00000100139.14" ; gene_name MICALL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150670.6" ; havana_transcript "OTTHUMT00000319545.4" ; hgnc_id "HGNC:29804" ; level 2 ; orig_coord_info "chr22,37906423,37906568,+" ; protein_id "ENSP00000215957.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MICALL1--LINC02885^ENST00000215957.10" ; transcript_name "MICALL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MICALL1--LINC02885 HAVANA mRNA 1641 20432 . + . FI_gene_label "MICALL1^ENSG00000100139.14" ; ID "MICALL1--LINC02885^ENST00000215957.10" ; Parent "MICALL1--LINC02885^MICALL1^ENSG00000100139.14" ; ccdsid "CCDS13961.1" ; exon_id "ENSE00001945112.1" ; exon_number 1 ; gene_id "MICALL1--LINC02885^MICALL1^ENSG00000100139.14" ; gene_name MICALL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150670.6" ; havana_transcript "OTTHUMT00000319545.4" ; hgnc_id "HGNC:29804" ; level 2 ; orig_coord_info "chr22,37906423,37906568,+" ; protein_id "ENSP00000215957.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "MICALL1--LINC02885^ENST00000215957.10" ; transcript_name "MICALL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MYO15B--QRICH2 ENSEMBL gene 35706 53789 . + . FI_gene_label "QRICH2^ENSG00000129646.15" ; ID "MYO15B--QRICH2^QRICH2^ENSG00000129646.15" ; ccdsid "CCDS32741.1" ; exon_id "ENSE00001715258.1" ; exon_number 1 ; gene_id "MYO15B--QRICH2^QRICH2^ENSG00000129646.15" ; gene_name QRICH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167578.5" ; hgnc_id "HGNC:25326" ; level 3 ; orig_coord_info "chr17,76307465,76307500,-" ; protein_id "ENSP00000262765.5" ; tag basic appris_principal_4 CCDS ; transcript_id "MYO15B--QRICH2^ENST00000262765.10" ; transcript_name "QRICH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MYO15B--QRICH2 ENSEMBL mRNA 35706 53789 . + . FI_gene_label "QRICH2^ENSG00000129646.15" ; ID "MYO15B--QRICH2^ENST00000262765.10" ; Parent "MYO15B--QRICH2^QRICH2^ENSG00000129646.15" ; ccdsid "CCDS32741.1" ; exon_id "ENSE00001715258.1" ; exon_number 1 ; gene_id "MYO15B--QRICH2^QRICH2^ENSG00000129646.15" ; gene_name QRICH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167578.5" ; hgnc_id "HGNC:25326" ; level 3 ; orig_coord_info "chr17,76307465,76307500,-" ; protein_id "ENSP00000262765.5" ; tag basic appris_principal_4 CCDS ; transcript_id "MYO15B--QRICH2^ENST00000262765.10" ; transcript_name "QRICH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MYO15B--QRICH2 HAVANA gene 22928 25457 . + . FI_gene_label "MYO15B^ENSG00000266714.9" ; ID "MYO15B--QRICH2^MYO15B^ENSG00000266714.9" ; exon_id "ENSE00002687125.1" ; exon_number 1 ; gene_id "MYO15B--QRICH2^MYO15B^ENSG00000266714.9" ; gene_name MYO15B ; gene_type protein_coding ; havana_gene "OTTHUMG00000179794.10" ; havana_transcript "OTTHUMT00000448187.2" ; hgnc_id "HGNC:14083" ; level 2 ; orig_coord_info "chr17,75616690,75616785,+" ; protein_id "ENSP00000488316.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "MYO15B--QRICH2^ENST00000577342.5" ; transcript_name "MYO15B-202" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
MYO15B--QRICH2 HAVANA mRNA 22928 25457 . + . FI_gene_label "MYO15B^ENSG00000266714.9" ; ID "MYO15B--QRICH2^ENST00000577342.5" ; Parent "MYO15B--QRICH2^MYO15B^ENSG00000266714.9" ; exon_id "ENSE00002687125.1" ; exon_number 1 ; gene_id "MYO15B--QRICH2^MYO15B^ENSG00000266714.9" ; gene_name MYO15B ; gene_type protein_coding ; havana_gene "OTTHUMG00000179794.10" ; havana_transcript "OTTHUMT00000448187.2" ; hgnc_id "HGNC:14083" ; level 2 ; orig_coord_info "chr17,75616690,75616785,+" ; protein_id "ENSP00000488316.1" ; tag mRNA_start_NF cds_start_NF ; transcript_id "MYO15B--QRICH2^ENST00000577342.5" ; transcript_name "MYO15B-202" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
NF1--CYB561 HAVANA gene 1001 71265 . + . FI_gene_label "NF1^ENSG00000196712.18" ; ID "NF1--CYB561^NF1^ENSG00000196712.18" ; ccdsid "CCDS11264.1" ; exon_id "ENSE00003803084.1" ; exon_number 1 ; gene_id "NF1--CYB561^NF1^ENSG00000196712.18" ; gene_name NF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132871.10" ; havana_transcript "OTTHUMT00000256352.1" ; hgnc_id "HGNC:7765" ; level 2 ; orig_coord_info "chr17,31095310,31095369,+" ; protein_id "ENSP00000348498.3" ; tag basic appris_principal_4 CCDS ; transcript_id "NF1--CYB561^ENST00000356175.7" ; transcript_name "NF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
NF1--CYB561 HAVANA mRNA 1001 71265 . + . FI_gene_label "NF1^ENSG00000196712.18" ; ID "NF1--CYB561^ENST00000356175.7" ; Parent "NF1--CYB561^NF1^ENSG00000196712.18" ; ccdsid "CCDS11264.1" ; exon_id "ENSE00003803084.1" ; exon_number 1 ; gene_id "NF1--CYB561^NF1^ENSG00000196712.18" ; gene_name NF1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132871.10" ; havana_transcript "OTTHUMT00000256352.1" ; hgnc_id "HGNC:7765" ; level 2 ; orig_coord_info "chr17,31095310,31095369,+" ; protein_id "ENSP00000348498.3" ; tag basic appris_principal_4 CCDS ; transcript_id "NF1--CYB561^ENST00000356175.7" ; transcript_name "NF1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NF1--CYB561 HAVANA gene 78108 89159 . + . FI_gene_label "CYB561^ENSG00000008283.16" ; ID "NF1--CYB561^CYB561^ENSG00000008283.16" ; ccdsid "CCDS11636.1" ; exon_id "ENSE00003582410.1" ; exon_number 2 ; gene_id "NF1--CYB561^CYB561^ENSG00000008283.16" ; gene_name CYB561 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179116.3" ; havana_transcript "OTTHUMT00000444843.2" ; hgnc_id "HGNC:2571" ; level 2 ; orig_coord_info "chr17,63437346,63437547,-" ; protein_id "ENSP00000354028.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "NF1--CYB561^ENST00000360793.8" ; transcript_name "CYB561-201" ; transcript_support_level 1 ; transcript_type protein_coding
NF1--CYB561 HAVANA mRNA 78108 89159 . + . FI_gene_label "CYB561^ENSG00000008283.16" ; ID "NF1--CYB561^ENST00000360793.8" ; Parent "NF1--CYB561^CYB561^ENSG00000008283.16" ; ccdsid "CCDS11636.1" ; exon_id "ENSE00003582410.1" ; exon_number 2 ; gene_id "NF1--CYB561^CYB561^ENSG00000008283.16" ; gene_name CYB561 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179116.3" ; havana_transcript "OTTHUMT00000444843.2" ; hgnc_id "HGNC:2571" ; level 2 ; orig_coord_info "chr17,63437346,63437547,-" ; protein_id "ENSP00000354028.3" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "NF1--CYB561^ENST00000360793.8" ; transcript_name "CYB561-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NOL4L--TM9SF4 HAVANA gene 1247 13811 . + . FI_gene_label "NOL4L^ENSG00000197183.14" ; ID "NOL4L--TM9SF4^NOL4L^ENSG00000197183.14" ; exon_id "ENSE00001467942.1" ; exon_number 1 ; gene_id "NOL4L--TM9SF4^NOL4L^ENSG00000197183.14" ; gene_name NOL4L ; gene_type protein_coding ; havana_gene "OTTHUMG00000032219.4" ; havana_transcript "OTTHUMT00000078629.4" ; hgnc_id "HGNC:16106" ; level 2 ; orig_coord_info "chr20,32584570,32584828,-" ; protein_id "ENSP00000201961.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "NOL4L--TM9SF4^ENST00000201961.6" ; transcript_name "NOL4L-201" ; transcript_support_level 3 ; transcript_type protein_coding
NOL4L--TM9SF4 HAVANA mRNA 1247 13811 . + . FI_gene_label "NOL4L^ENSG00000197183.14" ; ID "NOL4L--TM9SF4^ENST00000201961.6" ; Parent "NOL4L--TM9SF4^NOL4L^ENSG00000197183.14" ; exon_id "ENSE00001467942.1" ; exon_number 1 ; gene_id "NOL4L--TM9SF4^NOL4L^ENSG00000197183.14" ; gene_name NOL4L ; gene_type protein_coding ; havana_gene "OTTHUMG00000032219.4" ; havana_transcript "OTTHUMT00000078629.4" ; hgnc_id "HGNC:16106" ; level 2 ; orig_coord_info "chr20,32584570,32584828,-" ; protein_id "ENSP00000201961.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "NOL4L--TM9SF4^ENST00000201961.6" ; transcript_name "NOL4L-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
NOL4L--TM9SF4 HAVANA gene 30437 49567 . + . FI_gene_label "TM9SF4^ENSG00000101337.16" ; ID "NOL4L--TM9SF4^TM9SF4^ENSG00000101337.16" ; ccdsid "CCDS86943.1" ; exon_id "ENSE00003584741.1" ; exon_number 2 ; gene_id "NOL4L--TM9SF4^TM9SF4^ENSG00000101337.16" ; gene_name TM9SF4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032206.6" ; havana_transcript "OTTHUMT00000078607.4" ; hgnc_id "HGNC:30797" ; level 2 ; orig_coord_info "chr20,32133049,32133126,+" ; protein_id "ENSP00000217315.5" ; tag basic CCDS ; transcript_id "NOL4L--TM9SF4^ENST00000217315.9" ; transcript_name "TM9SF4-201" ; transcript_support_level 2 ; transcript_type protein_coding
NOL4L--TM9SF4 HAVANA mRNA 30437 49567 . + . FI_gene_label "TM9SF4^ENSG00000101337.16" ; ID "NOL4L--TM9SF4^ENST00000217315.9" ; Parent "NOL4L--TM9SF4^TM9SF4^ENSG00000101337.16" ; ccdsid "CCDS86943.1" ; exon_id "ENSE00003584741.1" ; exon_number 2 ; gene_id "NOL4L--TM9SF4^TM9SF4^ENSG00000101337.16" ; gene_name TM9SF4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000032206.6" ; havana_transcript "OTTHUMT00000078607.4" ; hgnc_id "HGNC:30797" ; level 2 ; orig_coord_info "chr20,32133049,32133126,+" ; protein_id "ENSP00000217315.5" ; tag basic CCDS ; transcript_id "NOL4L--TM9SF4^ENST00000217315.9" ; transcript_name "TM9SF4-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PANK2--DNMT3B HAVANA gene 22957 44117 . + . FI_gene_label "DNMT3B^ENSG00000088305.18" ; ID "PANK2--DNMT3B^DNMT3B^ENSG00000088305.18" ; ccdsid "CCDS13204.1" ; exon_id "ENSE00001301654.2" ; exon_number 1 ; gene_id "PANK2--DNMT3B^DNMT3B^ENSG00000088305.18" ; gene_name DNMT3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000032226.4" ; havana_transcript "OTTHUMT00000257075.2" ; hgnc_id "HGNC:2979" ; level 2 ; orig_coord_info "chr20,32780116,32780145,+" ; protein_id "ENSP00000201963.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "PANK2--DNMT3B^ENST00000201963.3" ; transcript_name "DNMT3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
PANK2--DNMT3B HAVANA mRNA 22957 44117 . + . FI_gene_label "DNMT3B^ENSG00000088305.18" ; ID "PANK2--DNMT3B^ENST00000201963.3" ; Parent "PANK2--DNMT3B^DNMT3B^ENSG00000088305.18" ; ccdsid "CCDS13204.1" ; exon_id "ENSE00001301654.2" ; exon_number 1 ; gene_id "PANK2--DNMT3B^DNMT3B^ENSG00000088305.18" ; gene_name DNMT3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000032226.4" ; havana_transcript "OTTHUMT00000257075.2" ; hgnc_id "HGNC:2979" ; level 2 ; orig_coord_info "chr20,32780116,32780145,+" ; protein_id "ENSP00000201963.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "PANK2--DNMT3B^ENST00000201963.3" ; transcript_name "DNMT3B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PANK2--DNMT3B HAVANA gene 1085 18641 . + . FI_gene_label "PANK2^ENSG00000125779.23" ; ID "PANK2--DNMT3B^PANK2^ENSG00000125779.23" ; ccdsid "CCDS13071.2" ; exon_id "ENSE00001481494.2" ; exon_number 1 ; gene_id "PANK2--DNMT3B^PANK2^ENSG00000125779.23" ; gene_name PANK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031768.7" ; havana_transcript "OTTHUMT00000077793.2" ; hgnc_id "HGNC:15894" ; level 2 ; orig_coord_info "chr20,3889101,3889728,+" ; protein_id "ENSP00000313377.4" ; tag basic appris_principal_2 CCDS ; transcript_id "PANK2--DNMT3B^ENST00000316562.9" ; transcript_name "PANK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PANK2--DNMT3B HAVANA mRNA 1085 18641 . + . FI_gene_label "PANK2^ENSG00000125779.23" ; ID "PANK2--DNMT3B^ENST00000316562.9" ; Parent "PANK2--DNMT3B^PANK2^ENSG00000125779.23" ; ccdsid "CCDS13071.2" ; exon_id "ENSE00001481494.2" ; exon_number 1 ; gene_id "PANK2--DNMT3B^PANK2^ENSG00000125779.23" ; gene_name PANK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000031768.7" ; havana_transcript "OTTHUMT00000077793.2" ; hgnc_id "HGNC:15894" ; level 2 ; orig_coord_info "chr20,3889101,3889728,+" ; protein_id "ENSP00000313377.4" ; tag basic appris_principal_2 CCDS ; transcript_id "PANK2--DNMT3B^ENST00000316562.9" ; transcript_name "PANK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^ENST00000289272.3" ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^ENST00000616325.1" ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PHF21B--ATXN10 HAVANA gene 25978 47911 . + . FI_gene_label "ATXN10^ENSG00000130638.17" ; ID "PHF21B--ATXN10^ATXN10^ENSG00000130638.17" ; ccdsid "CCDS14070.1" ; exon_id "ENSE00001487386.3" ; exon_number 1 ; gene_id "PHF21B--ATXN10^ATXN10^ENSG00000130638.17" ; gene_name ATXN10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150451.3" ; havana_transcript "OTTHUMT00000318142.3" ; hgnc_id "HGNC:10549" ; level 2 ; orig_coord_info "chr22,45672064,45672179,+" ; protein_id "ENSP00000252934.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PHF21B--ATXN10^ENST00000252934.10" ; transcript_name "ATXN10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PHF21B--ATXN10 HAVANA mRNA 25978 47911 . + . FI_gene_label "ATXN10^ENSG00000130638.17" ; ID "PHF21B--ATXN10^ENST00000252934.10" ; Parent "PHF21B--ATXN10^ATXN10^ENSG00000130638.17" ; ccdsid "CCDS14070.1" ; exon_id "ENSE00001487386.3" ; exon_number 1 ; gene_id "PHF21B--ATXN10^ATXN10^ENSG00000130638.17" ; gene_name ATXN10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150451.3" ; havana_transcript "OTTHUMT00000318142.3" ; hgnc_id "HGNC:10549" ; level 2 ; orig_coord_info "chr22,45672064,45672179,+" ; protein_id "ENSP00000252934.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PHF21B--ATXN10^ENST00000252934.10" ; transcript_name "ATXN10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PHF21B--ATXN10 HAVANA gene 1001 22941 . + . FI_gene_label "PHF21B^ENSG00000056487.16" ; ID "PHF21B--ATXN10^PHF21B^ENSG00000056487.16" ; ccdsid "CCDS14061.1" ; exon_id "ENSE00001212446.2" ; exon_number 1 ; gene_id "PHF21B--ATXN10^PHF21B^ENSG00000056487.16" ; gene_name PHF21B ; gene_type protein_coding ; havana_gene "OTTHUMG00000151199.5" ; havana_transcript "OTTHUMT00000321731.3" ; hgnc_id "HGNC:25161" ; level 2 ; orig_coord_info "chr22,45009496,45009549,-" ; protein_id "ENSP00000324403.5" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "PHF21B--ATXN10^ENST00000313237.10" ; transcript_name "PHF21B-201" ; transcript_support_level 1 ; transcript_type protein_coding
PHF21B--ATXN10 HAVANA mRNA 1001 22941 . + . FI_gene_label "PHF21B^ENSG00000056487.16" ; ID "PHF21B--ATXN10^ENST00000313237.10" ; Parent "PHF21B--ATXN10^PHF21B^ENSG00000056487.16" ; ccdsid "CCDS14061.1" ; exon_id "ENSE00001212446.2" ; exon_number 1 ; gene_id "PHF21B--ATXN10^PHF21B^ENSG00000056487.16" ; gene_name PHF21B ; gene_type protein_coding ; havana_gene "OTTHUMG00000151199.5" ; havana_transcript "OTTHUMT00000321731.3" ; hgnc_id "HGNC:25161" ; level 2 ; orig_coord_info "chr22,45009496,45009549,-" ; protein_id "ENSP00000324403.5" ; tag basic MANE_Select appris_alternative_2 CCDS ; transcript_id "PHF21B--ATXN10^ENST00000313237.10" ; transcript_name "PHF21B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PI4KAP1--MAPK1 HAVANA gene 18902 32350 . + . FI_gene_label "MAPK1^ENSG00000100030.15" ; ID "PI4KAP1--MAPK1^MAPK1^ENSG00000100030.15" ; ccdsid "CCDS13795.1" ; exon_id "ENSE00001838512.2" ; exon_number 1 ; gene_id "PI4KAP1--MAPK1^MAPK1^ENSG00000100030.15" ; gene_name MAPK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030508.2" ; havana_transcript "OTTHUMT00000075396.2" ; hgnc_id "HGNC:6871" ; level 1 ; orig_coord_info "chr22,21867322,21867440,-" ; protein_id "ENSP00000215832.7" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "PI4KAP1--MAPK1^ENST00000215832.11" ; transcript_name "MAPK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PI4KAP1--MAPK1 HAVANA mRNA 18902 32350 . + . FI_gene_label "MAPK1^ENSG00000100030.15" ; ID "PI4KAP1--MAPK1^ENST00000215832.11" ; Parent "PI4KAP1--MAPK1^MAPK1^ENSG00000100030.15" ; ccdsid "CCDS13795.1" ; exon_id "ENSE00001838512.2" ; exon_number 1 ; gene_id "PI4KAP1--MAPK1^MAPK1^ENSG00000100030.15" ; gene_name MAPK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030508.2" ; havana_transcript "OTTHUMT00000075396.2" ; hgnc_id "HGNC:6871" ; level 1 ; orig_coord_info "chr22,21867322,21867440,-" ; protein_id "ENSP00000215832.7" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "PI4KAP1--MAPK1^ENST00000215832.11" ; transcript_name "MAPK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPA1--AC124864.2 HAVANA gene 1575 8612 . + . FI_gene_label "PPA1^ENSG00000180817.12" ; ID "PPA1--AC124864.2^PPA1^ENSG00000180817.12" ; exon_id "ENSE00001552651.2" ; exon_number 1 ; gene_id "PPA1--AC124864.2^PPA1^ENSG00000180817.12" ; gene_name PPA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018399.3" ; havana_transcript "OTTHUMT00000048493.2" ; hgnc_id "HGNC:9226" ; level 2 ; orig_coord_info "chr10,70233264,70233327,-" ; protein_id "ENSP00000362327.4" ; transcript_id "PPA1--AC124864.2^ENST00000373230.7" ; transcript_name "PPA1-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
PPA1--AC124864.2 HAVANA mRNA 1575 8612 . + . FI_gene_label "PPA1^ENSG00000180817.12" ; ID "PPA1--AC124864.2^ENST00000373230.7" ; Parent "PPA1--AC124864.2^PPA1^ENSG00000180817.12" ; exon_id "ENSE00001552651.2" ; exon_number 1 ; gene_id "PPA1--AC124864.2^PPA1^ENSG00000180817.12" ; gene_name PPA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018399.3" ; havana_transcript "OTTHUMT00000048493.2" ; hgnc_id "HGNC:9226" ; level 2 ; orig_coord_info "chr10,70233264,70233327,-" ; protein_id "ENSP00000362327.4" ; transcript_id "PPA1--AC124864.2^ENST00000373230.7" ; transcript_name "PPA1-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
PPP6R2--CECR9 HAVANA gene 2300 24449 . + . FI_gene_label "PPP6R2^ENSG00000100239.16" ; ID "PPP6R2--CECR9^PPP6R2^ENSG00000100239.16" ; exon_id "ENSE00003893516.1" ; exon_number 4 ; gene_id "PPP6R2--CECR9^PPP6R2^ENSG00000100239.16" ; gene_name PPP6R2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150199.6" ; havana_transcript "OTTHUMT00000316809.1" ; hgnc_id "HGNC:19253" ; level 2 ; orig_coord_info "chr22,50393909,50394135,+" ; protein_id "ENSP00000216061.5" ; tag basic appris_alternative_2 ; transcript_id "PPP6R2--CECR9^ENST00000216061.9" ; transcript_name "PPP6R2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPP6R2--CECR9 HAVANA mRNA 2300 24449 . + . FI_gene_label "PPP6R2^ENSG00000100239.16" ; ID "PPP6R2--CECR9^ENST00000216061.9" ; Parent "PPP6R2--CECR9^PPP6R2^ENSG00000100239.16" ; exon_id "ENSE00003893516.1" ; exon_number 4 ; gene_id "PPP6R2--CECR9^PPP6R2^ENSG00000100239.16" ; gene_name PPP6R2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150199.6" ; havana_transcript "OTTHUMT00000316809.1" ; hgnc_id "HGNC:19253" ; level 2 ; orig_coord_info "chr22,50393909,50394135,+" ; protein_id "ENSP00000216061.5" ; tag basic appris_alternative_2 ; transcript_id "PPP6R2--CECR9^ENST00000216061.9" ; transcript_name "PPP6R2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPP6R2--RN7SL843P HAVANA gene 2300 24449 . + . FI_gene_label "PPP6R2^ENSG00000100239.16" ; ID "PPP6R2--RN7SL843P^PPP6R2^ENSG00000100239.16" ; exon_id "ENSE00003893516.1" ; exon_number 4 ; gene_id "PPP6R2--RN7SL843P^PPP6R2^ENSG00000100239.16" ; gene_name PPP6R2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150199.6" ; havana_transcript "OTTHUMT00000316809.1" ; hgnc_id "HGNC:19253" ; level 2 ; orig_coord_info "chr22,50393909,50394135,+" ; protein_id "ENSP00000216061.5" ; tag basic appris_alternative_2 ; transcript_id "PPP6R2--RN7SL843P^ENST00000216061.9" ; transcript_name "PPP6R2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPP6R2--RN7SL843P HAVANA mRNA 2300 24449 . + . FI_gene_label "PPP6R2^ENSG00000100239.16" ; ID "PPP6R2--RN7SL843P^ENST00000216061.9" ; Parent "PPP6R2--RN7SL843P^PPP6R2^ENSG00000100239.16" ; exon_id "ENSE00003893516.1" ; exon_number 4 ; gene_id "PPP6R2--RN7SL843P^PPP6R2^ENSG00000100239.16" ; gene_name PPP6R2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150199.6" ; havana_transcript "OTTHUMT00000316809.1" ; hgnc_id "HGNC:19253" ; level 2 ; orig_coord_info "chr22,50393909,50394135,+" ; protein_id "ENSP00000216061.5" ; tag basic appris_alternative_2 ; transcript_id "PPP6R2--RN7SL843P^ENST00000216061.9" ; transcript_name "PPP6R2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PTPRK--ARID1B HAVANA gene 61517 111124 . + . FI_gene_label "ARID1B^ENSG00000049618.24" ; ID "PTPRK--ARID1B^ARID1B^ENSG00000049618.24" ; exon_id "ENSE00002535311.1" ; exon_number 1 ; gene_id "PTPRK--ARID1B^ARID1B^ENSG00000049618.24" ; gene_name ARID1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000015890.14" ; havana_transcript "OTTHUMT00000042830.3" ; hgnc_id "HGNC:18040" ; level 1 ; orig_coord_info "chr6,156901376,156901525,+" ; protein_id "ENSP00000313006.7" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "PTPRK--ARID1B^ENST00000319584.11" ; transcript_name "ARID1B-201" ; transcript_support_level 2 ; transcript_type protein_coding
PTPRK--ARID1B HAVANA mRNA 61517 111124 . + . FI_gene_label "ARID1B^ENSG00000049618.24" ; ID "PTPRK--ARID1B^ENST00000319584.11" ; Parent "PTPRK--ARID1B^ARID1B^ENSG00000049618.24" ; exon_id "ENSE00002535311.1" ; exon_number 1 ; gene_id "PTPRK--ARID1B^ARID1B^ENSG00000049618.24" ; gene_name ARID1B ; gene_type protein_coding ; havana_gene "OTTHUMG00000015890.14" ; havana_transcript "OTTHUMT00000042830.3" ; hgnc_id "HGNC:18040" ; level 1 ; orig_coord_info "chr6,156901376,156901525,+" ; protein_id "ENSP00000313006.7" ; tag mRNA_start_NF cds_start_NF exp_conf ; transcript_id "PTPRK--ARID1B^ENST00000319584.11" ; transcript_name "ARID1B-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
PTPRK--ARID1B HAVANA gene 1034 48764 . + . FI_gene_label "PTPRK^ENSG00000152894.15" ; ID "PTPRK--ARID1B^PTPRK^ENSG00000152894.15" ; exon_id "ENSE00002151979.1" ; exon_number 1 ; gene_id "PTPRK--ARID1B^PTPRK^ENSG00000152894.15" ; gene_name PTPRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015536.10" ; havana_transcript "OTTHUMT00000390045.1" ; hgnc_id "HGNC:9674" ; level 2 ; orig_coord_info "chr6,128520259,128520358,-" ; protein_id "ENSP00000357190.3" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "PTPRK--ARID1B^ENST00000368207.7" ; transcript_name "PTPRK-203" ; transcript_support_level 5 ; transcript_type protein_coding
PTPRK--ARID1B HAVANA mRNA 1034 48764 . + . FI_gene_label "PTPRK^ENSG00000152894.15" ; ID "PTPRK--ARID1B^ENST00000368207.7" ; Parent "PTPRK--ARID1B^PTPRK^ENSG00000152894.15" ; exon_id "ENSE00002151979.1" ; exon_number 1 ; gene_id "PTPRK--ARID1B^PTPRK^ENSG00000152894.15" ; gene_name PTPRK ; gene_type protein_coding ; havana_gene "OTTHUMG00000015536.10" ; havana_transcript "OTTHUMT00000390045.1" ; hgnc_id "HGNC:9674" ; level 2 ; orig_coord_info "chr6,128520259,128520358,-" ; protein_id "ENSP00000357190.3" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "PTPRK--ARID1B^ENST00000368207.7" ; transcript_name "PTPRK-203" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RAP1GAP2--GSDMA HAVANA gene 4404 32194 . + . FI_gene_label "RAP1GAP2^ENSG00000132359.15" ; ID "RAP1GAP2--GSDMA^RAP1GAP2^ENSG00000132359.15" ; ccdsid "CCDS45573.1" ; exon_id "ENSE00002634319.1" ; exon_number 1 ; gene_id "RAP1GAP2--GSDMA^RAP1GAP2^ENSG00000132359.15" ; gene_name RAP1GAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177642.9" ; havana_transcript "OTTHUMT00000438208.3" ; hgnc_id "HGNC:29176" ; level 2 ; orig_coord_info "chr17,2796528,2796571,+" ; protein_id "ENSP00000254695.8" ; tag basic MANE_Select CCDS ; transcript_id "RAP1GAP2--GSDMA^ENST00000254695.13" ; transcript_name "RAP1GAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RAP1GAP2--GSDMA HAVANA mRNA 4404 32194 . + . FI_gene_label "RAP1GAP2^ENSG00000132359.15" ; ID "RAP1GAP2--GSDMA^ENST00000254695.13" ; Parent "RAP1GAP2--GSDMA^RAP1GAP2^ENSG00000132359.15" ; ccdsid "CCDS45573.1" ; exon_id "ENSE00002634319.1" ; exon_number 1 ; gene_id "RAP1GAP2--GSDMA^RAP1GAP2^ENSG00000132359.15" ; gene_name RAP1GAP2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177642.9" ; havana_transcript "OTTHUMT00000438208.3" ; hgnc_id "HGNC:29176" ; level 2 ; orig_coord_info "chr17,2796528,2796571,+" ; protein_id "ENSP00000254695.8" ; tag basic MANE_Select CCDS ; transcript_id "RAP1GAP2--GSDMA^ENST00000254695.13" ; transcript_name "RAP1GAP2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RAP1GAP2--GSDMA HAVANA gene 36238 46325 . + . FI_gene_label "GSDMA^ENSG00000167914.12" ; ID "RAP1GAP2--GSDMA^GSDMA^ENSG00000167914.12" ; ccdsid "CCDS45669.1" ; exon_id "ENSE00001282695.3" ; exon_number 2 ; gene_id "RAP1GAP2--GSDMA^GSDMA^ENSG00000167914.12" ; gene_name GSDMA ; gene_type protein_coding ; havana_gene "OTTHUMG00000179522.4" ; havana_transcript "OTTHUMT00000446847.3" ; hgnc_id "HGNC:13311" ; level 2 ; orig_coord_info "chr17,39965688,39965901,+" ; protein_id "ENSP00000301659.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RAP1GAP2--GSDMA^ENST00000301659.9" ; transcript_name "GSDMA-201" ; transcript_support_level 1 ; transcript_type protein_coding
RAP1GAP2--GSDMA HAVANA mRNA 36238 46325 . + . FI_gene_label "GSDMA^ENSG00000167914.12" ; ID "RAP1GAP2--GSDMA^ENST00000301659.9" ; Parent "RAP1GAP2--GSDMA^GSDMA^ENSG00000167914.12" ; ccdsid "CCDS45669.1" ; exon_id "ENSE00001282695.3" ; exon_number 2 ; gene_id "RAP1GAP2--GSDMA^GSDMA^ENSG00000167914.12" ; gene_name GSDMA ; gene_type protein_coding ; havana_gene "OTTHUMG00000179522.4" ; havana_transcript "OTTHUMT00000446847.3" ; hgnc_id "HGNC:13311" ; level 2 ; orig_coord_info "chr17,39965688,39965901,+" ; protein_id "ENSP00000301659.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RAP1GAP2--GSDMA^ENST00000301659.9" ; transcript_name "GSDMA-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RTKN2--CDH23 HAVANA gene 26739 103293 . + . FI_gene_label "CDH23^ENSG00000107736.22" ; ID "RTKN2--CDH23^CDH23^ENSG00000107736.22" ; ccdsid "CCDS86100.1" ; exon_id "ENSE00003669097.1" ; exon_number 2 ; gene_id "RTKN2--CDH23^CDH23^ENSG00000107736.22" ; gene_name CDH23 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019347.18" ; havana_transcript "OTTHUMT00000051227.8" ; hgnc_id "HGNC:13733" ; level 1 ; orig_coord_info "chr10,71439832,71439898,+" ; protein_id "ENSP00000224721.9" ; tag upstream_ATG basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "RTKN2--CDH23^ENST00000224721.12" ; transcript_name "CDH23-201" ; transcript_support_level 5 ; transcript_type protein_coding
RTKN2--CDH23 HAVANA mRNA 26739 103293 . + . FI_gene_label "CDH23^ENSG00000107736.22" ; ID "RTKN2--CDH23^ENST00000224721.12" ; Parent "RTKN2--CDH23^CDH23^ENSG00000107736.22" ; ccdsid "CCDS86100.1" ; exon_id "ENSE00003669097.1" ; exon_number 2 ; gene_id "RTKN2--CDH23^CDH23^ENSG00000107736.22" ; gene_name CDH23 ; gene_type protein_coding ; havana_gene "OTTHUMG00000019347.18" ; havana_transcript "OTTHUMT00000051227.8" ; hgnc_id "HGNC:13733" ; level 1 ; orig_coord_info "chr10,71439832,71439898,+" ; protein_id "ENSP00000224721.9" ; tag upstream_ATG basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "RTKN2--CDH23^ENST00000224721.12" ; transcript_name "CDH23-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RTKN2--CDH23 HAVANA gene 8214 23738 . + . FI_gene_label "RTKN2^ENSG00000182010.11" ; ID "RTKN2--CDH23^RTKN2^ENSG00000182010.11" ; exon_id "ENSE00003482830.1" ; exon_number 1 ; gene_id "RTKN2--CDH23^RTKN2^ENSG00000182010.11" ; gene_name RTKN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018299.6" ; havana_transcript "OTTHUMT00000048235.1" ; hgnc_id "HGNC:19364" ; level 2 ; orig_coord_info "chr10,62236066,62236094,-" ; protein_id "ENSP00000325379.2" ; tag basic ; transcript_id "RTKN2--CDH23^ENST00000315289.6" ; transcript_name "RTKN2-201" ; transcript_support_level 2 ; transcript_type protein_coding
RTKN2--CDH23 HAVANA mRNA 8214 23738 . + . FI_gene_label "RTKN2^ENSG00000182010.11" ; ID "RTKN2--CDH23^ENST00000315289.6" ; Parent "RTKN2--CDH23^RTKN2^ENSG00000182010.11" ; exon_id "ENSE00003482830.1" ; exon_number 1 ; gene_id "RTKN2--CDH23^RTKN2^ENSG00000182010.11" ; gene_name RTKN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018299.6" ; havana_transcript "OTTHUMT00000048235.1" ; hgnc_id "HGNC:19364" ; level 2 ; orig_coord_info "chr10,62236066,62236094,-" ; protein_id "ENSP00000325379.2" ; tag basic ; transcript_id "RTKN2--CDH23^ENST00000315289.6" ; transcript_name "RTKN2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SNU13--SEC14L3 HAVANA gene 13051 23125 . + . FI_gene_label "SEC14L3^ENSG00000100012.12" ; ID "SNU13--SEC14L3^SEC14L3^ENSG00000100012.12" ; ccdsid "CCDS13877.1" ; exon_id "ENSE00001837132.2" ; exon_number 1 ; gene_id "SNU13--SEC14L3^SEC14L3^ENSG00000100012.12" ; gene_name SEC14L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151259.5" ; havana_transcript "OTTHUMT00000321950.4" ; hgnc_id "HGNC:18655" ; level 2 ; orig_coord_info "chr22,30471905,30471958,-" ; protein_id "ENSP00000215812.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNU13--SEC14L3^ENST00000215812.9" ; transcript_name "SEC14L3-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNU13--SEC14L3 HAVANA mRNA 13051 23125 . + . FI_gene_label "SEC14L3^ENSG00000100012.12" ; ID "SNU13--SEC14L3^ENST00000215812.9" ; Parent "SNU13--SEC14L3^SEC14L3^ENSG00000100012.12" ; ccdsid "CCDS13877.1" ; exon_id "ENSE00001837132.2" ; exon_number 1 ; gene_id "SNU13--SEC14L3^SEC14L3^ENSG00000100012.12" ; gene_name SEC14L3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151259.5" ; havana_transcript "OTTHUMT00000321950.4" ; hgnc_id "HGNC:18655" ; level 2 ; orig_coord_info "chr22,30471905,30471958,-" ; protein_id "ENSP00000215812.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNU13--SEC14L3^ENST00000215812.9" ; transcript_name "SEC14L3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNU13--SEC14L3 HAVANA gene 4331 9276 . + . FI_gene_label "SNU13^ENSG00000100138.15" ; ID "SNU13--SEC14L3^SNU13^ENSG00000100138.15" ; ccdsid "CCDS14022.1" ; exon_id "ENSE00001388935.4" ; exon_number 1 ; gene_id "SNU13--SEC14L3^SNU13^ENSG00000100138.15" ; gene_name SNU13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151189.9" ; havana_transcript "OTTHUMT00000321683.2" ; hgnc_id "HGNC:7819" ; level 2 ; orig_coord_info "chr22,41682356,41682358,-" ; protein_id "ENSP00000215956.5" ; tag basic appris_principal_1 CCDS ; transcript_id "SNU13--SEC14L3^ENST00000215956.10" ; transcript_name "SNU13-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNU13--SEC14L3 HAVANA mRNA 4331 9276 . + . FI_gene_label "SNU13^ENSG00000100138.15" ; ID "SNU13--SEC14L3^ENST00000215956.10" ; Parent "SNU13--SEC14L3^SNU13^ENSG00000100138.15" ; ccdsid "CCDS14022.1" ; exon_id "ENSE00001388935.4" ; exon_number 1 ; gene_id "SNU13--SEC14L3^SNU13^ENSG00000100138.15" ; gene_name SNU13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151189.9" ; havana_transcript "OTTHUMT00000321683.2" ; hgnc_id "HGNC:7819" ; level 2 ; orig_coord_info "chr22,41682356,41682358,-" ; protein_id "ENSP00000215956.5" ; tag basic appris_principal_1 CCDS ; transcript_id "SNU13--SEC14L3^ENST00000215956.10" ; transcript_name "SNU13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRIOBP--KCNJ4 HAVANA gene 37301 40365 . + . FI_gene_label "KCNJ4^ENSG00000168135.4" ; ID "TRIOBP--KCNJ4^KCNJ4^ENSG00000168135.4" ; ccdsid "CCDS13971.1" ; exon_id "ENSE00001122853.1" ; exon_number 2 ; gene_id "TRIOBP--KCNJ4^KCNJ4^ENSG00000168135.4" ; gene_name KCNJ4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151131.1" ; havana_transcript "OTTHUMT00000321447.1" ; hgnc_id "HGNC:6265" ; level 2 ; orig_coord_info "chr22,38426798,38428132,-" ; protein_id "ENSP00000306497.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRIOBP--KCNJ4^ENST00000303592.3" ; transcript_name "KCNJ4-201" ; transcript_support_level 1 ; transcript_type protein_coding
TRIOBP--KCNJ4 HAVANA mRNA 37301 40365 . + . FI_gene_label "KCNJ4^ENSG00000168135.4" ; ID "TRIOBP--KCNJ4^ENST00000303592.3" ; Parent "TRIOBP--KCNJ4^KCNJ4^ENSG00000168135.4" ; ccdsid "CCDS13971.1" ; exon_id "ENSE00001122853.1" ; exon_number 2 ; gene_id "TRIOBP--KCNJ4^KCNJ4^ENSG00000168135.4" ; gene_name KCNJ4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151131.1" ; havana_transcript "OTTHUMT00000321447.1" ; hgnc_id "HGNC:6265" ; level 2 ; orig_coord_info "chr22,38426798,38428132,-" ; protein_id "ENSP00000306497.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TRIOBP--KCNJ4^ENST00000303592.3" ; transcript_name "KCNJ4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TRIOBP--KCNJ4 HAVANA gene 1574 31792 . + . FI_gene_label "TRIOBP^ENSG00000100106.22" ; ID "TRIOBP--KCNJ4^TRIOBP^ENSG00000100106.22" ; exon_id "ENSE00003532228.1" ; exon_number 2 ; gene_id "TRIOBP--KCNJ4^TRIOBP^ENSG00000100106.22" ; gene_name TRIOBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000150657.13" ; havana_transcript "OTTHUMT00000319440.2" ; hgnc_id "HGNC:17009" ; level 2 ; orig_coord_info "chr22,37701366,37701479,+" ; protein_id "ENSP00000340312.6" ; transcript_id "TRIOBP--KCNJ4^ENST00000344404.10" ; transcript_name "TRIOBP-202" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
TRIOBP--KCNJ4 HAVANA mRNA 1574 31792 . + . FI_gene_label "TRIOBP^ENSG00000100106.22" ; ID "TRIOBP--KCNJ4^ENST00000344404.10" ; Parent "TRIOBP--KCNJ4^TRIOBP^ENSG00000100106.22" ; exon_id "ENSE00003532228.1" ; exon_number 2 ; gene_id "TRIOBP--KCNJ4^TRIOBP^ENSG00000100106.22" ; gene_name TRIOBP ; gene_type protein_coding ; havana_gene "OTTHUMG00000150657.13" ; havana_transcript "OTTHUMT00000319440.2" ; hgnc_id "HGNC:17009" ; level 2 ; orig_coord_info "chr22,37701366,37701479,+" ; protein_id "ENSP00000340312.6" ; transcript_id "TRIOBP--KCNJ4^ENST00000344404.10" ; transcript_name "TRIOBP-202" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
TUBB2A--NRN1 HAVANA gene 8729 13857 . + . FI_gene_label "NRN1^ENSG00000124785.9" ; ID "TUBB2A--NRN1^NRN1^ENSG00000124785.9" ; ccdsid "CCDS4495.1" ; exon_id "ENSE00000847881.5" ; exon_number 1 ; gene_id "TUBB2A--NRN1^NRN1^ENSG00000124785.9" ; gene_name NRN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014184.2" ; havana_transcript "OTTHUMT00000039753.2" ; hgnc_id "HGNC:17972" ; level 2 ; orig_coord_info "chr6,6006695,6006749,-" ; protein_id "ENSP00000244766.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TUBB2A--NRN1^ENST00000244766.7" ; transcript_name "NRN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TUBB2A--NRN1 HAVANA mRNA 8729 13857 . + . FI_gene_label "NRN1^ENSG00000124785.9" ; ID "TUBB2A--NRN1^ENST00000244766.7" ; Parent "TUBB2A--NRN1^NRN1^ENSG00000124785.9" ; ccdsid "CCDS4495.1" ; exon_id "ENSE00000847881.5" ; exon_number 1 ; gene_id "TUBB2A--NRN1^NRN1^ENSG00000124785.9" ; gene_name NRN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014184.2" ; havana_transcript "OTTHUMT00000039753.2" ; hgnc_id "HGNC:17972" ; level 2 ; orig_coord_info "chr6,6006695,6006749,-" ; protein_id "ENSP00000244766.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TUBB2A--NRN1^ENST00000244766.7" ; transcript_name "NRN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TUBB2A--NRN1 HAVANA gene 1001 4879 . + . FI_gene_label "TUBB2A^ENSG00000137267.7" ; ID "TUBB2A--NRN1^TUBB2A^ENSG00000137267.7" ; ccdsid "CCDS4484.1" ; exon_id "ENSE00003596735.2" ; exon_number 1 ; gene_id "TUBB2A--NRN1^TUBB2A^ENSG00000137267.7" ; gene_name TUBB2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014135.2" ; havana_transcript "OTTHUMT00000039662.2" ; hgnc_id "HGNC:12412" ; level 2 ; orig_coord_info "chr6,3157407,3157463,-" ; protein_id "ENSP00000369703.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TUBB2A--NRN1^ENST00000333628.4" ; transcript_name "TUBB2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
TUBB2A--NRN1 HAVANA mRNA 1001 4879 . + . FI_gene_label "TUBB2A^ENSG00000137267.7" ; ID "TUBB2A--NRN1^ENST00000333628.4" ; Parent "TUBB2A--NRN1^TUBB2A^ENSG00000137267.7" ; ccdsid "CCDS4484.1" ; exon_id "ENSE00003596735.2" ; exon_number 1 ; gene_id "TUBB2A--NRN1^TUBB2A^ENSG00000137267.7" ; gene_name TUBB2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014135.2" ; havana_transcript "OTTHUMT00000039662.2" ; hgnc_id "HGNC:12412" ; level 2 ; orig_coord_info "chr6,3157407,3157463,-" ; protein_id "ENSP00000369703.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TUBB2A--NRN1^ENST00000333628.4" ; transcript_name "TUBB2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TUBB2A--PKMP5 HAVANA gene 1001 4879 . + . FI_gene_label "TUBB2A^ENSG00000137267.7" ; ID "TUBB2A--PKMP5^TUBB2A^ENSG00000137267.7" ; ccdsid "CCDS4484.1" ; exon_id "ENSE00003596735.2" ; exon_number 1 ; gene_id "TUBB2A--PKMP5^TUBB2A^ENSG00000137267.7" ; gene_name TUBB2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014135.2" ; havana_transcript "OTTHUMT00000039662.2" ; hgnc_id "HGNC:12412" ; level 2 ; orig_coord_info "chr6,3157407,3157463,-" ; protein_id "ENSP00000369703.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TUBB2A--PKMP5^ENST00000333628.4" ; transcript_name "TUBB2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
TUBB2A--PKMP5 HAVANA mRNA 1001 4879 . + . FI_gene_label "TUBB2A^ENSG00000137267.7" ; ID "TUBB2A--PKMP5^ENST00000333628.4" ; Parent "TUBB2A--PKMP5^TUBB2A^ENSG00000137267.7" ; ccdsid "CCDS4484.1" ; exon_id "ENSE00003596735.2" ; exon_number 1 ; gene_id "TUBB2A--PKMP5^TUBB2A^ENSG00000137267.7" ; gene_name TUBB2A ; gene_type protein_coding ; havana_gene "OTTHUMG00000014135.2" ; havana_transcript "OTTHUMT00000039662.2" ; hgnc_id "HGNC:12412" ; level 2 ; orig_coord_info "chr6,3157407,3157463,-" ; protein_id "ENSP00000369703.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TUBB2A--PKMP5^ENST00000333628.4" ; transcript_name "TUBB2A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TXN2--APOL1 HAVANA gene 1001 5862 . + . FI_gene_label "TXN2^ENSG00000100348.10" ; ID "TXN2--APOL1^TXN2^ENSG00000100348.10" ; ccdsid "CCDS13928.1" ; exon_id "ENSE00001666349.1" ; exon_number 2 ; gene_id "TXN2--APOL1^TXN2^ENSG00000100348.10" ; gene_name TXN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150596.4" ; havana_transcript "OTTHUMT00000319016.2" ; hgnc_id "HGNC:17772" ; level 2 ; orig_coord_info "chr22,36480575,36480837,-" ; protein_id "ENSP00000216185.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXN2--APOL1^ENST00000216185.7" ; transcript_name "TXN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TXN2--APOL1 HAVANA mRNA 1001 5862 . + . FI_gene_label "TXN2^ENSG00000100348.10" ; ID "TXN2--APOL1^ENST00000216185.7" ; Parent "TXN2--APOL1^TXN2^ENSG00000100348.10" ; ccdsid "CCDS13928.1" ; exon_id "ENSE00001666349.1" ; exon_number 2 ; gene_id "TXN2--APOL1^TXN2^ENSG00000100348.10" ; gene_name TXN2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000150596.4" ; havana_transcript "OTTHUMT00000319016.2" ; hgnc_id "HGNC:17772" ; level 2 ; orig_coord_info "chr22,36480575,36480837,-" ; protein_id "ENSP00000216185.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TXN2--APOL1^ENST00000216185.7" ; transcript_name "TXN2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TXN2--APOL1 HAVANA gene 8870 18017 . + . FI_gene_label "APOL1^ENSG00000100342.21" ; ID "TXN2--APOL1^APOL1^ENSG00000100342.21" ; ccdsid "CCDS13925.1" ; exon_id "ENSE00003556989.1" ; exon_number 2 ; gene_id "TXN2--APOL1^APOL1^ENSG00000100342.21" ; gene_name APOL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030427.9" ; havana_transcript "OTTHUMT00000075315.5" ; hgnc_id "HGNC:618" ; level 2 ; orig_coord_info "chr22,36253963,36253991,+" ; protein_id "ENSP00000317674.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "TXN2--APOL1^ENST00000319136.8" ; transcript_name "APOL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TXN2--APOL1 HAVANA mRNA 8870 18017 . + . FI_gene_label "APOL1^ENSG00000100342.21" ; ID "TXN2--APOL1^ENST00000319136.8" ; Parent "TXN2--APOL1^APOL1^ENSG00000100342.21" ; ccdsid "CCDS13925.1" ; exon_id "ENSE00003556989.1" ; exon_number 2 ; gene_id "TXN2--APOL1^APOL1^ENSG00000100342.21" ; gene_name APOL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000030427.9" ; havana_transcript "OTTHUMT00000075315.5" ; hgnc_id "HGNC:618" ; level 2 ; orig_coord_info "chr22,36253963,36253991,+" ; protein_id "ENSP00000317674.4" ; tag basic appris_alternative_2 CCDS ; transcript_id "TXN2--APOL1^ENST00000319136.8" ; transcript_name "APOL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZFAND3--TINAG HAVANA gene 17688 29393 . + . FI_gene_label "TINAG^ENSG00000137251.16" ; ID "ZFAND3--TINAG^TINAG^ENSG00000137251.16" ; ccdsid "CCDS4955.1" ; exon_id "ENSE00001939598.2" ; exon_number 1 ; gene_id "ZFAND3--TINAG^TINAG^ENSG00000137251.16" ; gene_name TINAG ; gene_type protein_coding ; havana_gene "OTTHUMG00000014893.2" ; havana_transcript "OTTHUMT00000040984.2" ; hgnc_id "HGNC:14599" ; level 2 ; orig_coord_info "chr6,54308551,54308905,+" ; protein_id "ENSP00000259782.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZFAND3--TINAG^ENST00000259782.9" ; transcript_name "TINAG-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZFAND3--TINAG HAVANA mRNA 17688 29393 . + . FI_gene_label "TINAG^ENSG00000137251.16" ; ID "ZFAND3--TINAG^ENST00000259782.9" ; Parent "ZFAND3--TINAG^TINAG^ENSG00000137251.16" ; ccdsid "CCDS4955.1" ; exon_id "ENSE00001939598.2" ; exon_number 1 ; gene_id "ZFAND3--TINAG^TINAG^ENSG00000137251.16" ; gene_name TINAG ; gene_type protein_coding ; havana_gene "OTTHUMG00000014893.2" ; havana_transcript "OTTHUMT00000040984.2" ; hgnc_id "HGNC:14599" ; level 2 ; orig_coord_info "chr6,54308551,54308905,+" ; protein_id "ENSP00000259782.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZFAND3--TINAG^ENST00000259782.9" ; transcript_name "TINAG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZFAND3--TINAG HAVANA gene 1001 14105 . + . FI_gene_label "ZFAND3^ENSG00000156639.12" ; ID "ZFAND3--TINAG^ZFAND3^ENSG00000156639.12" ; ccdsid "CCDS4836.1" ; exon_id "ENSE00001460453.3" ; exon_number 1 ; gene_id "ZFAND3--TINAG^ZFAND3^ENSG00000156639.12" ; gene_name ZFAND3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014629.7" ; havana_transcript "OTTHUMT00000040424.4" ; hgnc_id "HGNC:18019" ; level 2 ; orig_coord_info "chr6,37819946,37820016,+" ; protein_id "ENSP00000287218.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZFAND3--TINAG^ENST00000287218.9" ; transcript_name "ZFAND3-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZFAND3--TINAG HAVANA mRNA 1001 14105 . + . FI_gene_label "ZFAND3^ENSG00000156639.12" ; ID "ZFAND3--TINAG^ENST00000287218.9" ; Parent "ZFAND3--TINAG^ZFAND3^ENSG00000156639.12" ; ccdsid "CCDS4836.1" ; exon_id "ENSE00001460453.3" ; exon_number 1 ; gene_id "ZFAND3--TINAG^ZFAND3^ENSG00000156639.12" ; gene_name ZFAND3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014629.7" ; havana_transcript "OTTHUMT00000040424.4" ; hgnc_id "HGNC:18019" ; level 2 ; orig_coord_info "chr6,37819946,37820016,+" ; protein_id "ENSP00000287218.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZFAND3--TINAG^ENST00000287218.9" ; transcript_name "ZFAND3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNRF3--NIPSNAP1 HAVANA gene 19638 29873 . + . FI_gene_label "NIPSNAP1^ENSG00000184117.12" ; ID "ZNRF3--NIPSNAP1^NIPSNAP1^ENSG00000184117.12" ; ccdsid "CCDS13860.1" ; exon_id "ENSE00001878960.2" ; exon_number 1 ; gene_id "ZNRF3--NIPSNAP1^NIPSNAP1^ENSG00000184117.12" ; gene_name NIPSNAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151294.4" ; havana_transcript "OTTHUMT00000322117.2" ; hgnc_id "HGNC:7827" ; level 2 ; orig_coord_info "chr22,29580985,29581082,-" ; protein_id "ENSP00000216121.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNRF3--NIPSNAP1^ENST00000216121.12" ; transcript_name "NIPSNAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNRF3--NIPSNAP1 HAVANA mRNA 19638 29873 . + . FI_gene_label "NIPSNAP1^ENSG00000184117.12" ; ID "ZNRF3--NIPSNAP1^ENST00000216121.12" ; Parent "ZNRF3--NIPSNAP1^NIPSNAP1^ENSG00000184117.12" ; ccdsid "CCDS13860.1" ; exon_id "ENSE00001878960.2" ; exon_number 1 ; gene_id "ZNRF3--NIPSNAP1^NIPSNAP1^ENSG00000184117.12" ; gene_name NIPSNAP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151294.4" ; havana_transcript "OTTHUMT00000322117.2" ; hgnc_id "HGNC:7827" ; level 2 ; orig_coord_info "chr22,29580985,29581082,-" ; protein_id "ENSP00000216121.7" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNRF3--NIPSNAP1^ENST00000216121.12" ; transcript_name "NIPSNAP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNRF3--NIPSNAP1 HAVANA gene 2496 12620 . + . FI_gene_label "ZNRF3^ENSG00000183579.16" ; ID "ZNRF3--NIPSNAP1^ZNRF3^ENSG00000183579.16" ; ccdsid "CCDS42999.1" ; exon_id "ENSE00003547707.1" ; exon_number 2 ; gene_id "ZNRF3--NIPSNAP1^ZNRF3^ENSG00000183579.16" ; gene_name ZNRF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151009.3" ; havana_transcript "OTTHUMT00000320944.1" ; hgnc_id "HGNC:18126" ; level 2 ; orig_coord_info "chr22,28987076,28987201,+" ; protein_id "ENSP00000384456.1" ; tag alternative_5_UTR basic CCDS ; transcript_id "ZNRF3--NIPSNAP1^ENST00000402174.5" ; transcript_name "ZNRF3-201" ; transcript_support_level 2 ; transcript_type protein_coding
ZNRF3--NIPSNAP1 HAVANA mRNA 2496 12620 . + . FI_gene_label "ZNRF3^ENSG00000183579.16" ; ID "ZNRF3--NIPSNAP1^ENST00000402174.5" ; Parent "ZNRF3--NIPSNAP1^ZNRF3^ENSG00000183579.16" ; ccdsid "CCDS42999.1" ; exon_id "ENSE00003547707.1" ; exon_number 2 ; gene_id "ZNRF3--NIPSNAP1^ZNRF3^ENSG00000183579.16" ; gene_name ZNRF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151009.3" ; havana_transcript "OTTHUMT00000320944.1" ; hgnc_id "HGNC:18126" ; level 2 ; orig_coord_info "chr22,28987076,28987201,+" ; protein_id "ENSP00000384456.1" ; tag alternative_5_UTR basic CCDS ; transcript_id "ZNRF3--NIPSNAP1^ENST00000402174.5" ; transcript_name "ZNRF3-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
AGAP12P--FRMPD2 HAVANA gene 1042 9399 . + . FI_gene_label "AGAP12P^ENSG00000265018.6" ; ID "AGAP12P--FRMPD2^AGAP12P^ENSG00000265018.6" ; exon_id "ENSE00002718806.2" ; exon_number 1 ; gene_id "AGAP12P--FRMPD2^AGAP12P^ENSG00000265018.6" ; gene_name AGAP12P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018164.4" ; havana_transcript "OTTHUMT00000047912.4" ; hgnc_id "HGNC:23661" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48031376,48031599,-" ; tag pseudo_consens basic ; transcript_id "AGAP12P--FRMPD2^ENST00000585227.6" ; transcript_name "AGAP12P-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
AGAP12P--FRMPD2 HAVANA RNA 1042 9399 . + . FI_gene_label "AGAP12P^ENSG00000265018.6" ; ID "AGAP12P--FRMPD2^ENST00000585227.6" ; Parent "AGAP12P--FRMPD2^AGAP12P^ENSG00000265018.6" ; exon_id "ENSE00002718806.2" ; exon_number 1 ; gene_id "AGAP12P--FRMPD2^AGAP12P^ENSG00000265018.6" ; gene_name AGAP12P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018164.4" ; havana_transcript "OTTHUMT00000047912.4" ; hgnc_id "HGNC:23661" ; level 1 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48031376,48031599,-" ; tag pseudo_consens basic ; transcript_id "AGAP12P--FRMPD2^ENST00000585227.6" ; transcript_name "AGAP12P-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AL157996.2--CDKAL1 HAVANA gene 1001 3391 . + . FI_gene_label "AL157996.2^ENSG00000286424.1" ; ID "AL157996.2--CDKAL1^AL157996.2^ENSG00000286424.1" ; exon_id "ENSE00003887717.1" ; exon_number 1 ; gene_id "AL157996.2--CDKAL1^AL157996.2^ENSG00000286424.1" ; gene_name "AL157996.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194858.1" ; havana_transcript "OTTHUMT00000522661.1" ; level 2 ; orig_coord_info "chr14,69483679,69483714,-" ; tag basic TAGENE ; transcript_id "AL157996.2--CDKAL1^ENST00000668822.1" ; transcript_name "AL157996.2-201" ; transcript_type lncRNA
AL157996.2--CDKAL1 HAVANA RNA 1001 3391 . + . FI_gene_label "AL157996.2^ENSG00000286424.1" ; ID "AL157996.2--CDKAL1^ENST00000668822.1" ; Parent "AL157996.2--CDKAL1^AL157996.2^ENSG00000286424.1" ; exon_id "ENSE00003887717.1" ; exon_number 1 ; gene_id "AL157996.2--CDKAL1^AL157996.2^ENSG00000286424.1" ; gene_name "AL157996.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194858.1" ; havana_transcript "OTTHUMT00000522661.1" ; level 2 ; orig_coord_info "chr14,69483679,69483714,-" ; tag basic TAGENE ; transcript_id "AL157996.2--CDKAL1^ENST00000668822.1" ; transcript_name "AL157996.2-201" ; transcript_type lncRNA
L1 and L2 created:
ATP6V1E1--MIATNB HAVANA gene 18982 22822 . + . FI_gene_label "MIATNB^ENSG00000244625.7" ; ID "ATP6V1E1--MIATNB^MIATNB^ENSG00000244625.7" ; exon_id "ENSE00001722723.1" ; exon_number 1 ; gene_id "ATP6V1E1--MIATNB^MIATNB^ENSG00000244625.7" ; gene_name MIATNB ; gene_type lncRNA ; havana_gene "OTTHUMG00000150981.10" ; havana_transcript "OTTHUMT00000320775.1" ; hgnc_id "HGNC:50731" ; level 2 ; orig_coord_info "chr22,26717369,26717459,+" ; tag basic ; transcript_id "ATP6V1E1--MIATNB^ENST00000417083.1" ; transcript_name "MIATNB-201" ; transcript_support_level 3 ; transcript_type lncRNA
ATP6V1E1--MIATNB HAVANA RNA 18982 22822 . + . FI_gene_label "MIATNB^ENSG00000244625.7" ; ID "ATP6V1E1--MIATNB^ENST00000417083.1" ; Parent "ATP6V1E1--MIATNB^MIATNB^ENSG00000244625.7" ; exon_id "ENSE00001722723.1" ; exon_number 1 ; gene_id "ATP6V1E1--MIATNB^MIATNB^ENSG00000244625.7" ; gene_name MIATNB ; gene_type lncRNA ; havana_gene "OTTHUMG00000150981.10" ; havana_transcript "OTTHUMT00000320775.1" ; hgnc_id "HGNC:50731" ; level 2 ; orig_coord_info "chr22,26717369,26717459,+" ; tag basic ; transcript_id "ATP6V1E1--MIATNB^ENST00000417083.1" ; transcript_name "MIATNB-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
CECR2--PSLNR HAVANA gene 36426 38944 . + . FI_gene_label "PSLNR^ENSG00000225255.6" ; ID "CECR2--PSLNR^PSLNR^ENSG00000225255.6" ; exon_id "ENSE00001617515.1" ; exon_number 1 ; gene_id "CECR2--PSLNR^PSLNR^ENSG00000225255.6" ; gene_name PSLNR ; gene_type lncRNA ; havana_gene "OTTHUMG00000140260.2" ; havana_transcript "OTTHUMT00000276778.1" ; hgnc_id "HGNC:54405" ; level 2 ; orig_coord_info "chr22,15765687,15765780,+" ; tag basic ; transcript_id "CECR2--PSLNR^ENST00000438574.1" ; transcript_name "PSLNR-201" ; transcript_support_level 3 ; transcript_type lncRNA
CECR2--PSLNR HAVANA RNA 36426 38944 . + . FI_gene_label "PSLNR^ENSG00000225255.6" ; ID "CECR2--PSLNR^ENST00000438574.1" ; Parent "CECR2--PSLNR^PSLNR^ENSG00000225255.6" ; exon_id "ENSE00001617515.1" ; exon_number 1 ; gene_id "CECR2--PSLNR^PSLNR^ENSG00000225255.6" ; gene_name PSLNR ; gene_type lncRNA ; havana_gene "OTTHUMG00000140260.2" ; havana_transcript "OTTHUMT00000276778.1" ; hgnc_id "HGNC:54405" ; level 2 ; orig_coord_info "chr22,15765687,15765780,+" ; tag basic ; transcript_id "CECR2--PSLNR^ENST00000438574.1" ; transcript_name "PSLNR-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
DIP2C--AC013287.1 HAVANA gene 48031 53387 . + . FI_gene_label "AC013287.1^ENSG00000228566.2" ; ID "DIP2C--AC013287.1^AC013287.1^ENSG00000228566.2" ; exon_id "ENSE00001669165.1" ; exon_number 1 ; gene_id "DIP2C--AC013287.1^AC013287.1^ENSG00000228566.2" ; gene_name "AC013287.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000018320.2" ; havana_transcript "OTTHUMT00000048265.1" ; level 2 ; orig_coord_info "chr10,63664664,63664772,+" ; tag basic ; transcript_id "DIP2C--AC013287.1^ENST00000444770.1" ; transcript_name "AC013287.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
DIP2C--AC013287.1 HAVANA RNA 48031 53387 . + . FI_gene_label "AC013287.1^ENSG00000228566.2" ; ID "DIP2C--AC013287.1^ENST00000444770.1" ; Parent "DIP2C--AC013287.1^AC013287.1^ENSG00000228566.2" ; exon_id "ENSE00001669165.1" ; exon_number 1 ; gene_id "DIP2C--AC013287.1^AC013287.1^ENSG00000228566.2" ; gene_name "AC013287.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000018320.2" ; havana_transcript "OTTHUMT00000048265.1" ; level 2 ; orig_coord_info "chr10,63664664,63664772,+" ; tag basic ; transcript_id "DIP2C--AC013287.1^ENST00000444770.1" ; transcript_name "AC013287.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
DLG5--AC069540.2 HAVANA gene 40469 44702 . + . FI_gene_label "AC069540.2^ENSG00000286876.1" ; ID "DLG5--AC069540.2^AC069540.2^ENSG00000286876.1" ; exon_id "ENSE00003863802.1" ; exon_number 1 ; gene_id "DLG5--AC069540.2^AC069540.2^ENSG00000286876.1" ; gene_name "AC069540.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194772.1" ; havana_transcript "OTTHUMT00000521775.1" ; level 2 ; orig_coord_info "chr10,83724737,83724834,-" ; tag basic TAGENE ; transcript_id "DLG5--AC069540.2^ENST00000659573.1" ; transcript_name "AC069540.2-201" ; transcript_type lncRNA
DLG5--AC069540.2 HAVANA RNA 40469 44702 . + . FI_gene_label "AC069540.2^ENSG00000286876.1" ; ID "DLG5--AC069540.2^ENST00000659573.1" ; Parent "DLG5--AC069540.2^AC069540.2^ENSG00000286876.1" ; exon_id "ENSE00003863802.1" ; exon_number 1 ; gene_id "DLG5--AC069540.2^AC069540.2^ENSG00000286876.1" ; gene_name "AC069540.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000194772.1" ; havana_transcript "OTTHUMT00000521775.1" ; level 2 ; orig_coord_info "chr10,83724737,83724834,-" ; tag basic TAGENE ; transcript_id "DLG5--AC069540.2^ENST00000659573.1" ; transcript_name "AC069540.2-201" ; transcript_type lncRNA
L1 and L2 created:
GDA--CD24P4 HAVANA gene 30510 30752 . + . FI_gene_label "CD24P4^ENSG00000185275.6" ; ID "GDA--CD24P4^CD24P4^ENSG00000185275.6" ; exon_id "ENSE00001493514.3" ; exon_number 1 ; gene_id "GDA--CD24P4^CD24P4^ENSG00000185275.6" ; gene_name CD24P4 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000036500.3" ; havana_transcript "OTTHUMT00000088777.3" ; hgnc_id "HGNC:1649" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chrY,18992467,18992709,-" ; tag basic ; transcript_id "GDA--CD24P4^ENST00000382840.3" ; transcript_name "CD24P4-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
GDA--CD24P4 HAVANA RNA 30510 30752 . + . FI_gene_label "CD24P4^ENSG00000185275.6" ; ID "GDA--CD24P4^ENST00000382840.3" ; Parent "GDA--CD24P4^CD24P4^ENSG00000185275.6" ; exon_id "ENSE00001493514.3" ; exon_number 1 ; gene_id "GDA--CD24P4^CD24P4^ENSG00000185275.6" ; gene_name CD24P4 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000036500.3" ; havana_transcript "OTTHUMT00000088777.3" ; hgnc_id "HGNC:1649" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chrY,18992467,18992709,-" ; tag basic ; transcript_id "GDA--CD24P4^ENST00000382840.3" ; transcript_name "CD24P4-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
MICALL1--LINC02885 HAVANA gene 26776 29447 . + . FI_gene_label "LINC02885^ENSG00000286592.1" ; ID "MICALL1--LINC02885^LINC02885^ENSG00000286592.1" ; exon_id "ENSE00003876754.1" ; exon_number 1 ; gene_id "MICALL1--LINC02885^LINC02885^ENSG00000286592.1" ; gene_name LINC02885 ; gene_type lncRNA ; havana_gene "OTTHUMG00000150934.5" ; havana_transcript "OTTHUMT00000514663.1" ; hgnc_id "HGNC:41188" ; level 2 ; orig_coord_info "chr22,34893774,34893847,-" ; tag TAGENE ; transcript_id "MICALL1--LINC02885^ENST00000665218.1" ; transcript_name "LINC02885-201" ; transcript_type lncRNA
MICALL1--LINC02885 HAVANA RNA 26776 29447 . + . FI_gene_label "LINC02885^ENSG00000286592.1" ; ID "MICALL1--LINC02885^ENST00000665218.1" ; Parent "MICALL1--LINC02885^LINC02885^ENSG00000286592.1" ; exon_id "ENSE00003876754.1" ; exon_number 1 ; gene_id "MICALL1--LINC02885^LINC02885^ENSG00000286592.1" ; gene_name LINC02885 ; gene_type lncRNA ; havana_gene "OTTHUMG00000150934.5" ; havana_transcript "OTTHUMT00000514663.1" ; hgnc_id "HGNC:41188" ; level 2 ; orig_coord_info "chr22,34893774,34893847,-" ; tag TAGENE ; transcript_id "MICALL1--LINC02885^ENST00000665218.1" ; transcript_name "LINC02885-201" ; transcript_type lncRNA
L1 and L2 created:
PI4KAP1--MAPK1 HAVANA gene 11912 15866 . + . FI_gene_label "PI4KAP1^ENSG00000274602.5" ; ID "PI4KAP1--MAPK1^PI4KAP1^ENSG00000274602.5" ; exon_id "ENSE00003729380.1" ; exon_number 1 ; gene_id "PI4KAP1--MAPK1^PI4KAP1^ENSG00000274602.5" ; gene_name PI4KAP1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000188354.2" ; havana_transcript "OTTHUMT00000476963.1" ; hgnc_id "HGNC:33576" ; level 2 ; orig_coord_info "chr22,18535859,18537791,-" ; tag basic ; transcript_id "PI4KAP1--MAPK1^ENST00000610959.4" ; transcript_name "PI4KAP1-201" ; transcript_support_level 2 ; transcript_type processed_transcript
PI4KAP1--MAPK1 HAVANA RNA 11912 15866 . + . FI_gene_label "PI4KAP1^ENSG00000274602.5" ; ID "PI4KAP1--MAPK1^ENST00000610959.4" ; Parent "PI4KAP1--MAPK1^PI4KAP1^ENSG00000274602.5" ; exon_id "ENSE00003729380.1" ; exon_number 1 ; gene_id "PI4KAP1--MAPK1^PI4KAP1^ENSG00000274602.5" ; gene_name PI4KAP1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000188354.2" ; havana_transcript "OTTHUMT00000476963.1" ; hgnc_id "HGNC:33576" ; level 2 ; orig_coord_info "chr22,18535859,18537791,-" ; tag basic ; transcript_id "PI4KAP1--MAPK1^ENST00000610959.4" ; transcript_name "PI4KAP1-201" ; transcript_support_level 2 ; transcript_type processed_transcript
L1 and L2 created:
PPA1--AC124864.2 HAVANA gene 16552 20080 . + . FI_gene_label "AC124864.2^ENSG00000286103.1" ; ID "PPA1--AC124864.2^AC124864.2^ENSG00000286103.1" ; exon_id "ENSE00003844851.1" ; exon_number 1 ; gene_id "PPA1--AC124864.2^AC124864.2^ENSG00000286103.1" ; gene_name "AC124864.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193127.1" ; havana_transcript "OTTHUMT00000500240.1" ; level 2 ; orig_coord_info "chr21,9634244,9634398,+" ; tag basic ; transcript_id "PPA1--AC124864.2^ENST00000652368.1" ; transcript_name "AC124864.2-201" ; transcript_type lncRNA
PPA1--AC124864.2 HAVANA RNA 16552 20080 . + . FI_gene_label "AC124864.2^ENSG00000286103.1" ; ID "PPA1--AC124864.2^ENST00000652368.1" ; Parent "PPA1--AC124864.2^AC124864.2^ENSG00000286103.1" ; exon_id "ENSE00003844851.1" ; exon_number 1 ; gene_id "PPA1--AC124864.2^AC124864.2^ENSG00000286103.1" ; gene_name "AC124864.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193127.1" ; havana_transcript "OTTHUMT00000500240.1" ; level 2 ; orig_coord_info "chr21,9634244,9634398,+" ; tag basic ; transcript_id "PPA1--AC124864.2^ENST00000652368.1" ; transcript_name "AC124864.2-201" ; transcript_type lncRNA
L1 and L2 created:
PPP6R2--CECR9 HAVANA gene 28149 28347 . + . FI_gene_label "CECR9^ENSG00000231004.2" ; ID "PPP6R2--CECR9^CECR9^ENSG00000231004.2" ; exon_id "ENSE00001592910.1" ; exon_number 1 ; gene_id "PPP6R2--CECR9^CECR9^ENSG00000231004.2" ; gene_name CECR9 ; gene_type TEC ; havana_gene "OTTHUMG00000150065.1" ; havana_transcript "OTTHUMT00000316085.1" ; hgnc_id "HGNC:1847" ; level 1 ; orig_coord_info "chr22,17329034,17329232,+" ; tag basic exp_conf ; transcript_id "PPP6R2--CECR9^ENST00000453421.1" ; transcript_name "CECR9-201" ; transcript_support_level NA ; transcript_type TEC
PPP6R2--CECR9 HAVANA RNA 28149 28347 . + . FI_gene_label "CECR9^ENSG00000231004.2" ; ID "PPP6R2--CECR9^ENST00000453421.1" ; Parent "PPP6R2--CECR9^CECR9^ENSG00000231004.2" ; exon_id "ENSE00001592910.1" ; exon_number 1 ; gene_id "PPP6R2--CECR9^CECR9^ENSG00000231004.2" ; gene_name CECR9 ; gene_type TEC ; havana_gene "OTTHUMG00000150065.1" ; havana_transcript "OTTHUMT00000316085.1" ; hgnc_id "HGNC:1847" ; level 1 ; orig_coord_info "chr22,17329034,17329232,+" ; tag basic exp_conf ; transcript_id "PPP6R2--CECR9^ENST00000453421.1" ; transcript_name "CECR9-201" ; transcript_support_level NA ; transcript_type TEC
L1 and L2 created:
PPP6R2--RN7SL843P ENSEMBL gene 28149 28445 . + . FI_gene_label "RN7SL843P^ENSG00000239547.3" ; ID "PPP6R2--RN7SL843P^RN7SL843P^ENSG00000239547.3" ; exon_id "ENSE00001814148.3" ; exon_number 1 ; gene_id "PPP6R2--RN7SL843P^RN7SL843P^ENSG00000239547.3" ; gene_name RN7SL843P ; gene_type misc_RNA ; hgnc_id "HGNC:46859" ; level 3 ; orig_coord_info "chr22,17352881,17353177,-" ; tag basic ; transcript_id "PPP6R2--RN7SL843P^ENST00000485262.3" ; transcript_name "RN7SL843P-201" ; transcript_support_level NA ; transcript_type misc_RNA
PPP6R2--RN7SL843P ENSEMBL RNA 28149 28445 . + . FI_gene_label "RN7SL843P^ENSG00000239547.3" ; ID "PPP6R2--RN7SL843P^ENST00000485262.3" ; Parent "PPP6R2--RN7SL843P^RN7SL843P^ENSG00000239547.3" ; exon_id "ENSE00001814148.3" ; exon_number 1 ; gene_id "PPP6R2--RN7SL843P^RN7SL843P^ENSG00000239547.3" ; gene_name RN7SL843P ; gene_type misc_RNA ; hgnc_id "HGNC:46859" ; level 3 ; orig_coord_info "chr22,17352881,17353177,-" ; tag basic ; transcript_id "PPP6R2--RN7SL843P^ENST00000485262.3" ; transcript_name "RN7SL843P-201" ; transcript_support_level NA ; transcript_type misc_RNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TUBB2A--PKMP5 HAVANA gene 8049 9649 . + . FI_gene_label "PKMP5^ENSG00000215057.4" ; ID "TUBB2A--PKMP5^PKMP5^ENSG00000215057.4" ; exon_id "ENSE00001690261.2" ; exon_number 1 ; gene_id "TUBB2A--PKMP5^PKMP5^ENSG00000215057.4" ; gene_name PKMP5 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000014183.2" ; havana_transcript "OTTHUMT00000039752.2" ; hgnc_id "HGNC:44247" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr6,5972412,5974012,+" ; tag pseudo_consens basic ; transcript_id "TUBB2A--PKMP5^ENST00000454707.2" ; transcript_name "PKMP5-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TUBB2A--PKMP5 HAVANA RNA 8049 9649 . + . FI_gene_label "PKMP5^ENSG00000215057.4" ; ID "TUBB2A--PKMP5^ENST00000454707.2" ; Parent "TUBB2A--PKMP5^PKMP5^ENSG00000215057.4" ; exon_id "ENSE00001690261.2" ; exon_number 1 ; gene_id "TUBB2A--PKMP5^PKMP5^ENSG00000215057.4" ; gene_name PKMP5 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000014183.2" ; havana_transcript "OTTHUMT00000039752.2" ; hgnc_id "HGNC:44247" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr6,5972412,5974012,+" ; tag pseudo_consens basic ; transcript_id "TUBB2A--PKMP5^ENST00000454707.2" ; transcript_name "PKMP5-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
885 cases fixed where L3 features have parent feature(s) missing
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--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 1 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1951 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 70 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
Lets remove isoform ACO2--ENTHD1^ENST00000678269.1
1 identical isoforms removed
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed