Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/b058659fd33f79c88e18ace448dbfc/659_bR4-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/2c0d35d4e94ded7093c7e2da2fc031/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/2c0d35d4e94ded7093c7e2da2fc031/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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Processed 580000000 records
paired = 287394984
unpaired = 5757105
MERGED PAIRED END READS = 287394984
MATES PROCESSED = 580547073
TOTAL READS     = 293152089
DISTINCT READS  = 1.66607e+08
DISTINCT COUNTS = 753
MAX COUNT       = 1273776
COUNTS OF 1     = 1.09576e+08
MAX TERMS       = 100
OBSERVED COUNTS (1273777)
1	109576060
2	33380276
3	11783694
4	4923122
5	2405750
6	1338693
7	817626
8	539635
9	374666
10	271592
11	203216
12	155412
13	121757
14	96814
15	79179
16	65233
17	54004
18	45610
19	38287
20	33306
21	28026
22	24789
23	21455
24	19071
25	16532
26	15170
27	13384
28	11892
29	10656
30	9689
31	8630
32	7841
33	7102
34	6439
35	6093
36	5575
37	5030
38	4514
39	4357
40	3896
41	3620
42	3405
43	3099
44	2989
45	2771
46	2596
47	2484
48	2296
49	2036
50	2079
51	1836
52	1682
53	1675
54	1601
55	1404
56	1416
57	1370
58	1272
59	1191
60	1140
61	1060
62	980
63	942
64	955
65	867
66	800
67	836
68	811
69	724
70	666
71	695
72	650
73	628
74	602
75	535
76	554
77	503
78	503
79	471
80	451
81	427
82	435
83	419
84	405
85	399
86	403
87	355
88	303
89	313
90	340
91	320
92	285
93	307
94	290
95	276
96	257
97	255
98	224
99	259
100	241
101	216
102	224
103	207
104	215
105	200
106	203
107	181
108	165
109	188
110	160
111	162
112	143
113	159
114	165
115	153
116	129
117	146
118	148
119	134
120	129
121	115
122	123
123	120
124	116
125	108
126	109
127	91
128	104
129	114
130	87
131	88
132	101
133	109
134	76
135	109
136	93
137	102
138	91
139	81
140	85
141	84
142	85
143	56
144	65
145	76
146	83
147	64
148	69
149	69
150	60
151	68
152	58
153	58
154	71
155	66
156	68
157	63
158	48
159	57
160	54
161	55
162	50
163	46
164	49
165	45
166	43
167	52
168	38
169	42
170	50
171	44
172	43
173	48
174	54
175	41
176	45
177	49
178	42
179	31
180	37
181	38
182	38
183	40
184	42
185	28
186	47
187	34
188	29
189	32
190	27
191	24
192	30
193	30
194	16
195	31
196	29
197	34
198	35
199	30
200	33
201	22
202	24
203	21
204	33
205	20
206	30
207	18
208	17
209	22
210	16
211	16
212	15
213	29
214	19
215	27
216	22
217	18
218	19
219	16
220	20
221	14
222	22
223	19
224	18
225	19
226	9
227	23
228	15
229	15
230	16
231	14
232	23
233	24
234	20
235	14
236	13
237	9
238	13
239	15
240	12
241	14
242	18
243	19
244	8
245	14
246	16
247	15
248	17
249	10
250	12
251	14
252	10
253	15
254	11
255	10
256	13
257	8
258	8
259	9
260	10
261	12
262	7
263	9
264	11
265	14
266	9
267	16
268	8
269	6
270	13
271	12
272	10
273	14
274	9
275	12
276	9
277	9
278	7
279	9
280	9
281	10
282	9
283	5
284	7
285	3
286	6
287	13
288	6
289	9
290	13
291	4
292	11
293	7
294	6
295	4
296	2
297	8
298	11
299	4
300	3
301	7
302	9
303	3
304	8
305	7
306	5
307	7
308	8
309	4
310	13
311	5
312	4
313	3
314	3
315	5
316	8
317	10
318	7
319	7
320	4
321	5
322	4
323	10
324	6
325	4
326	4
327	3
328	10
329	3
330	2
331	9
332	4
333	4
334	7
335	2
336	5
337	1
338	4
339	5
340	6
341	7
342	8
343	5
344	3
345	3
346	6
347	4
348	2
349	1
350	3
351	4
352	2
353	8
354	4
355	1
356	8
357	3
358	2
359	5
360	4
361	2
362	4
363	5
364	2
365	4
366	2
368	7
369	3
370	4
371	1
372	3
373	2
374	6
375	3
376	3
377	2
378	2
379	1
380	1
381	2
383	2
384	4
385	2
386	1
387	7
388	2
389	3
390	4
391	1
392	3
393	2
394	4
395	2
396	1
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398	2
399	5
400	4
401	3
402	1
403	2
404	2
405	2
406	1
407	4
408	1
409	1
410	1
411	3
412	3
413	3
414	4
415	3
416	3
417	3
418	3
419	3
420	2
421	5
422	3
423	2
424	3
426	4
427	3
428	1
429	1
430	5
431	1
432	4
433	2
434	1
436	3
438	5
439	1
441	4
442	3
443	5
444	2
445	1
446	3
447	2
448	3
449	1
450	4
453	3
454	3
455	1
457	5
458	2
459	2
463	3
464	3
465	2
467	1
468	1
469	2
471	2
472	1
473	1
475	2
476	2
477	1
478	3
480	1
482	2
486	4
487	1
488	3
489	3
490	1
491	1
492	1
493	1
494	1
496	1
497	1
498	3
499	1
501	2
503	3
504	1
505	1
506	3
507	1
508	2
509	2
510	2
511	1
512	2
514	1
518	1
519	1
521	4
522	1
525	1
526	1
528	1
529	1
530	2
531	1
532	2
533	1
537	1
538	1
540	1
542	2
543	1
544	1
546	1
547	1
548	2
549	5
550	1
551	1
552	1
554	1
555	1
556	1
559	1
561	1
563	1
564	1
565	2
567	4
568	2
569	3
571	2
573	2
574	1
575	1
576	2
578	2
580	1
582	1
584	1
586	1
589	3
590	2
595	2
597	1
600	1
602	1
604	1
605	1
606	1
607	1
608	1
613	1
614	2
615	2
618	1
620	1
622	1
625	3
630	1
631	1
632	1
637	1
648	1
654	1
656	2
661	1
666	2
668	1
669	1
670	1
676	1
689	1
690	1
694	1
701	1
709	1
713	1
717	1
718	1
719	1
720	1
724	1
725	1
727	2
732	1
734	1
735	1
736	1
741	1
745	1
747	2
748	1
750	1
751	2
759	1
760	2
772	1
776	1
778	1
781	1
788	1
790	1
793	1
796	1
799	1
802	1
807	1
813	1
816	2
817	2
823	1
825	1
830	2
831	1
832	1
834	1
835	1
843	1
846	1
853	1
857	1
860	4
871	1
876	1
879	1
883	2
885	1
887	1
892	1
901	1
906	1
910	1
911	1
915	1
927	1
928	1
932	1
941	1
955	2
956	1
957	1
959	1
967	1
993	1
998	1
1004	1
1008	1
1012	1
1021	1
1031	1
1046	1
1050	1
1052	1
1060	1
1091	1
1110	1
1111	2
1126	1
1127	1
1163	1
1175	1
1200	1
1201	1
1208	1
1224	1
1239	1
1288	1
1293	1
1294	1
1304	1
1305	1
1312	1
1313	1
1314	1
1330	1
1344	1
1348	1
1352	1
1359	1
1360	1
1365	1
1370	1
1386	1
1395	1
1421	1
1486	1
1490	1
1500	1
1505	1
1522	2
1527	1
1529	1
1542	1
1549	1
1553	1
1558	1
1561	1
1571	1
1593	1
1609	1
1623	2
1634	1
1637	1
1638	1
1643	1
1648	1
1651	1
1663	1
1672	1
1688	1
1706	1
1755	1
1758	1
1761	1
1763	1
1785	1
1787	1
1797	1
1813	1
1852	1
1893	1
1905	1
1917	1
1919	1
1951	1
1973	1
2065	1
2068	1
2083	1
2099	1
2130	1
2145	1
2171	1
2180	1
2201	1
2225	1
2260	1
2311	1
2328	1
2393	1
2544	1
2584	1
2684	1
2823	1
2841	1
2876	1
2895	1
2984	1
3107	1
3282	1
3965	1
6338	1
6670	1
7124	1
14106	1
25022	1
1273776	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
._...____..._.__..._..._....__.._..__._.._._.._..._..._._._._.__.._.._..
_.....__........__...__.........._......_._._.._._._..._....._.._..._._.
__...
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]