Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/4e956a0a8b9d9cde85368043eb6f69/659_8h-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/2ca6dea8aca88a489ef5189bd5801a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/2ca6dea8aca88a489ef5189bd5801a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/1f1c14e0ccb2c16a2d68d7b3a749de/659_8h-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (7) splicing reads. 6 splicing junctions. 4 known splicing junctions. 2 novel splicing junctions.
sampling 10% (15) splicing reads. 9 splicing junctions. 5 known splicing junctions. 4 novel splicing junctions.
sampling 15% (22) splicing reads. 10 splicing junctions. 5 known splicing junctions. 5 novel splicing junctions.
sampling 20% (30) splicing reads. 11 splicing junctions. 5 known splicing junctions. 6 novel splicing junctions.
sampling 25% (37) splicing reads. 14 splicing junctions. 6 known splicing junctions. 8 novel splicing junctions.
sampling 30% (45) splicing reads. 16 splicing junctions. 6 known splicing junctions. 10 novel splicing junctions.
sampling 35% (52) splicing reads. 17 splicing junctions. 6 known splicing junctions. 11 novel splicing junctions.
sampling 40% (60) splicing reads. 19 splicing junctions. 6 known splicing junctions. 13 novel splicing junctions.
sampling 45% (67) splicing reads. 19 splicing junctions. 6 known splicing junctions. 13 novel splicing junctions.
sampling 50% (75) splicing reads. 19 splicing junctions. 6 known splicing junctions. 13 novel splicing junctions.
sampling 55% (83) splicing reads. 20 splicing junctions. 6 known splicing junctions. 14 novel splicing junctions.
sampling 60% (90) splicing reads. 20 splicing junctions. 6 known splicing junctions. 14 novel splicing junctions.
sampling 65% (98) splicing reads. 20 splicing junctions. 6 known splicing junctions. 14 novel splicing junctions.
sampling 70% (105) splicing reads. 20 splicing junctions. 6 known splicing junctions. 14 novel splicing junctions.
sampling 75% (113) splicing reads. 21 splicing junctions. 6 known splicing junctions. 15 novel splicing junctions.
sampling 80% (120) splicing reads. 21 splicing junctions. 6 known splicing junctions. 15 novel splicing junctions.
sampling 85% (128) splicing reads. 21 splicing junctions. 6 known splicing junctions. 15 novel splicing junctions.
sampling 90% (135) splicing reads. 21 splicing junctions. 6 known splicing junctions. 15 novel splicing junctions.
sampling 95% (143) splicing reads. 21 splicing junctions. 6 known splicing junctions. 15 novel splicing junctions.
sampling 100% (151) splicing reads. 21 splicing junctions. 6 known splicing junctions. 15 novel splicing junctions.
null device 
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