Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/f78fa31378eca5da22cb54da5817b5/fi_workdir/659_bNS-T1-TRNA-1_B23MHV2LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/872c8b3961779a594743fb6dba1ccc/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/872c8b3961779a594743fb6dba1ccc/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 1866
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 1866
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:1866
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 1 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092807.3--DDAH1 HAVANA mRNA 13647 23704 . + . FI_gene_label "DDAH1^ENSG00000153904.21" ; ID "AC092807.3--DDAH1^ENST00000284031.13" ; Parent "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; ccdsid "CCDS705.1" ; exon_id "ENSE00001013010.7" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^DDAH1^ENSG00000153904.21" ; gene_name DDAH1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000191181.3" ; havana_transcript "OTTHUMT00000029189.3" ; hgnc_id "HGNC:2715" ; level 2 ; orig_coord_info "chr1,85464743,85465045,-" ; protein_id "ENSP00000284031.8" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC092807.3--DDAH1^ENST00000284031.13" ; transcript_name "DDAH1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EML4--ALK HAVANA gene 1001 31063 . + . FI_gene_label "EML4^ENSG00000143924.19" ; ID "EML4--ALK^EML4^ENSG00000143924.19" ; ccdsid "CCDS1807.1" ; exon_id "ENSE00001548738.1" ; exon_number 1 ; gene_id "EML4--ALK^EML4^ENSG00000143924.19" ; gene_name EML4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128603.7" ; havana_transcript "OTTHUMT00000250463.4" ; hgnc_id "HGNC:1316" ; level 2 ; orig_coord_info "chr2,42169612,42169636,+" ; protein_id "ENSP00000320663.5" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "EML4--ALK^ENST00000318522.10" ; transcript_name "EML4-201" ; transcript_support_level 1 ; transcript_type protein_coding
EML4--ALK HAVANA mRNA 1001 31063 . + . FI_gene_label "EML4^ENSG00000143924.19" ; ID "EML4--ALK^ENST00000318522.10" ; Parent "EML4--ALK^EML4^ENSG00000143924.19" ; ccdsid "CCDS1807.1" ; exon_id "ENSE00001548738.1" ; exon_number 1 ; gene_id "EML4--ALK^EML4^ENSG00000143924.19" ; gene_name EML4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128603.7" ; havana_transcript "OTTHUMT00000250463.4" ; hgnc_id "HGNC:1316" ; level 2 ; orig_coord_info "chr2,42169612,42169636,+" ; protein_id "ENSP00000320663.5" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "EML4--ALK^ENST00000318522.10" ; transcript_name "EML4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EML4--ALK HAVANA gene 34064 69068 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "EML4--ALK^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "EML4--ALK^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EML4--ALK^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
EML4--ALK HAVANA mRNA 34064 69068 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "EML4--ALK^ENST00000389048.8" ; Parent "EML4--ALK^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "EML4--ALK^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EML4--ALK^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FBXO25--AL669831.1 HAVANA gene 2640 15007 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "FBXO25--AL669831.1^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "FBXO25--AL669831.1^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "FBXO25--AL669831.1^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
FBXO25--AL669831.1 HAVANA mRNA 2640 15007 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "FBXO25--AL669831.1^ENST00000276326.9" ; Parent "FBXO25--AL669831.1^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "FBXO25--AL669831.1^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "FBXO25--AL669831.1^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
IGFL1P2--HIF3A HAVANA gene 5593 23988 . + . FI_gene_label "HIF3A^ENSG00000124440.16" ; ID "IGFL1P2--HIF3A^HIF3A^ENSG00000124440.16" ; ccdsid "CCDS42580.2" ; exon_id "ENSE00003567095.1" ; exon_number 2 ; gene_id "IGFL1P2--HIF3A^HIF3A^ENSG00000124440.16" ; gene_name HIF3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000141296.6" ; havana_transcript "OTTHUMT00000384749.1" ; hgnc_id "HGNC:15825" ; level 2 ; orig_coord_info "chr19,46303933,46304088,+" ; protein_id "ENSP00000244303.6" ; tag basic CCDS ; transcript_id "IGFL1P2--HIF3A^ENST00000244303.10" ; transcript_name "HIF3A-202" ; transcript_support_level 2 ; transcript_type protein_coding
IGFL1P2--HIF3A HAVANA mRNA 5593 23988 . + . FI_gene_label "HIF3A^ENSG00000124440.16" ; ID "IGFL1P2--HIF3A^ENST00000244303.10" ; Parent "IGFL1P2--HIF3A^HIF3A^ENSG00000124440.16" ; ccdsid "CCDS42580.2" ; exon_id "ENSE00003567095.1" ; exon_number 2 ; gene_id "IGFL1P2--HIF3A^HIF3A^ENSG00000124440.16" ; gene_name HIF3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000141296.6" ; havana_transcript "OTTHUMT00000384749.1" ; hgnc_id "HGNC:15825" ; level 2 ; orig_coord_info "chr19,46303933,46304088,+" ; protein_id "ENSP00000244303.6" ; tag basic CCDS ; transcript_id "IGFL1P2--HIF3A^ENST00000244303.10" ; transcript_name "HIF3A-202" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^ENST00000289272.3" ; Parent "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^ENST00000378126.4" ; Parent "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA10 HAVANA gene 8733 18186 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA10 HAVANA mRNA 8733 18186 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA10 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA10^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA10 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA10^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA10^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA10^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA11 HAVANA gene 8548 17353 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA11 HAVANA mRNA 8548 17353 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA11 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA11^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA11 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA11^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA11^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA11^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA12 HAVANA gene 8544 16436 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA12 HAVANA mRNA 8544 16436 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA12 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA12^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA12 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA12^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA12^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA12^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA8 HAVANA gene 11020 20200 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA8 HAVANA mRNA 11020 20200 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA8 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA8^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA8 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA8^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA8^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA8^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA9 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA9^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGA9 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGA9^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGA9^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGA9 HAVANA gene 8565 16292 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGA9 HAVANA mRNA 8565 16292 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB6 HAVANA gene 8726 18325 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGB6 HAVANA mRNA 8726 18325 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB6 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB6^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGB6 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB6^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB6^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB6^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB7 HAVANA gene 8576 16505 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGB7 HAVANA mRNA 8576 16505 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGB7 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB7^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGB7 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGB7^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGB7^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGB7^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC3 HAVANA gene 8563 18749 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGC3 HAVANA mRNA 8563 18749 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC3 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC3^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGC3 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC3^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC3^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC3^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC4 HAVANA gene 8721 16517 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGC4 HAVANA mRNA 8721 16517 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC4 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC4^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGC4 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC4^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC4^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC4^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC5 HAVANA gene 8544 16569 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA2--PCDHGC5 HAVANA mRNA 8544 16569 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA2--PCDHGC5 HAVANA gene 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC5^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA2--PCDHGC5 HAVANA mRNA 1001 5543 . + . FI_gene_label "PCDHGA2^ENSG00000081853.15" ; ID "PCDHGA2--PCDHGC5^ENST00000528330.2" ; Parent "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; exon_id "ENSE00002198097.2" ; exon_number 1 ; gene_id "PCDHGA2--PCDHGC5^PCDHGA2^ENSG00000081853.15" ; gene_name PCDHGA2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163679.4" ; havana_transcript "OTTHUMT00000377024.2" ; hgnc_id "HGNC:8700" ; level 2 ; orig_coord_info "chr5,141338972,141341440,+" ; protein_id "ENSP00000483020.1" ; tag basic ; transcript_id "PCDHGA2--PCDHGC5^ENST00000528330.2" ; transcript_name "PCDHGA2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA10 HAVANA gene 7742 17195 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA10 HAVANA mRNA 7742 17195 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA5--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA10 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA10 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA10^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA10^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA10^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA11 HAVANA gene 7557 16362 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA11 HAVANA mRNA 7557 16362 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA5--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA11 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA11 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA11^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA11^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA11^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA12 HAVANA gene 7553 15445 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA12 HAVANA mRNA 7553 15445 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA5--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA12 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA12 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA12^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA12^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA12^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA8 HAVANA gene 10029 19209 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA8 HAVANA mRNA 10029 19209 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA5--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA8 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA8 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA8^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA8^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA8^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA9 HAVANA gene 7574 15301 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGA9 HAVANA mRNA 7574 15301 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA5--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGA9 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGA9 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGA9^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGA9^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGA9^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB6 HAVANA gene 7735 17334 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGB6 HAVANA mRNA 7735 17334 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA5--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB6 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGB6 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB6^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB6^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB6^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB7 HAVANA gene 7585 15514 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGB7 HAVANA mRNA 7585 15514 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA5--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGB7 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGB7 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGB7^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGB7^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGB7^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC3 HAVANA gene 7572 17758 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC3 HAVANA mRNA 7572 17758 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA5--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC3 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC3 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC3^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC3^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC3^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC4 HAVANA gene 7730 15526 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC4 HAVANA mRNA 7730 15526 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA5--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC4 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC4 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC4^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC4^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC4^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC5 HAVANA gene 7553 15578 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA5--PCDHGC5 HAVANA mRNA 7553 15578 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA5--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA5--PCDHGC5 HAVANA gene 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA5--PCDHGC5 HAVANA mRNA 1001 4552 . + . FI_gene_label "PCDHGA5^ENSG00000253485.2" ; ID "PCDHGA5--PCDHGC5^ENST00000611914.1" ; Parent "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; ccdsid "CCDS75333.1" ; exon_id "ENSE00003746232.1" ; exon_number 1 ; gene_id "PCDHGA5--PCDHGC5^PCDHGA5^ENSG00000253485.2" ; gene_name PCDHGA5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163683.2" ; havana_transcript "OTTHUMT00000476686.1" ; hgnc_id "HGNC:8703" ; level 2 ; orig_coord_info "chr5,141364331,141366769,+" ; protein_id "ENSP00000480337.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA5--PCDHGC5^ENST00000611914.1" ; transcript_name "PCDHGA5-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA10 HAVANA gene 9840 19293 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA10 HAVANA mRNA 9840 19293 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA6--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA10 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA10 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA10^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA10^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA10^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA11 HAVANA gene 9655 18460 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA11 HAVANA mRNA 9655 18460 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA6--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA11 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA11 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA11^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA11^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA11^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA12 HAVANA gene 9651 17543 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA12 HAVANA mRNA 9651 17543 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA6--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA12 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA12 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA12^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA12^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA12^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA8 HAVANA gene 12127 21307 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA8 HAVANA mRNA 12127 21307 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA6--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA8 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA8 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA8^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA8^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA8^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA9 HAVANA gene 9672 17399 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGA9 HAVANA mRNA 9672 17399 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA6--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGA9 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGA9 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGA9^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGA9^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGA9^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB6 HAVANA gene 9833 19432 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGB6 HAVANA mRNA 9833 19432 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA6--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB6 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGB6 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB6^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB6^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB6^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB7 HAVANA gene 9683 17612 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGB7 HAVANA mRNA 9683 17612 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA6--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGB7 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGB7 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGB7^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGB7^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGB7^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC3 HAVANA gene 9670 19856 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC3 HAVANA mRNA 9670 19856 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA6--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC3 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC3 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC3^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC3^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC3^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC4 HAVANA gene 9828 17624 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC4 HAVANA mRNA 9828 17624 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA6--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC4 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC4 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC4^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC4^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC4^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC5 HAVANA gene 9651 17676 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA6--PCDHGC5 HAVANA mRNA 9651 17676 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA6--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA6--PCDHGC5 HAVANA gene 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA6--PCDHGC5 HAVANA mRNA 1001 6650 . + . FI_gene_label "PCDHGA6^ENSG00000253731.3" ; ID "PCDHGA6--PCDHGC5^ENST00000610583.1" ; Parent "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; ccdsid "CCDS75335.1" ; exon_id "ENSE00003746318.1" ; exon_number 1 ; gene_id "PCDHGA6--PCDHGC5^PCDHGA6^ENSG00000253731.3" ; gene_name PCDHGA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163684.2" ; havana_transcript "OTTHUMT00000476688.1" ; hgnc_id "HGNC:8704" ; level 2 ; orig_coord_info "chr5,141374084,141376537,+" ; protein_id "ENSP00000479478.1" ; tag RNA_Seq_supported_partial basic CCDS ; transcript_id "PCDHGA6--PCDHGC5^ENST00000610583.1" ; transcript_name "PCDHGA6-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
SNTB2--TANGO6 HAVANA gene 20876 47517 . + . FI_gene_label "TANGO6^ENSG00000103047.8" ; ID "SNTB2--TANGO6^TANGO6^ENSG00000103047.8" ; ccdsid "CCDS45516.1" ; exon_id "ENSE00001111652.2" ; exon_number 1 ; gene_id "SNTB2--TANGO6^TANGO6^ENSG00000103047.8" ; gene_name TANGO6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000176743.4" ; havana_transcript "OTTHUMT00000433471.3" ; hgnc_id "HGNC:25749" ; level 2 ; orig_coord_info "chr16,68843618,68843711,+" ; protein_id "ENSP00000261778.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNTB2--TANGO6^ENST00000261778.2" ; transcript_name "TANGO6-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNTB2--TANGO6 HAVANA mRNA 20876 47517 . + . FI_gene_label "TANGO6^ENSG00000103047.8" ; ID "SNTB2--TANGO6^ENST00000261778.2" ; Parent "SNTB2--TANGO6^TANGO6^ENSG00000103047.8" ; ccdsid "CCDS45516.1" ; exon_id "ENSE00001111652.2" ; exon_number 1 ; gene_id "SNTB2--TANGO6^TANGO6^ENSG00000103047.8" ; gene_name TANGO6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000176743.4" ; havana_transcript "OTTHUMT00000433471.3" ; hgnc_id "HGNC:25749" ; level 2 ; orig_coord_info "chr16,68843618,68843711,+" ; protein_id "ENSP00000261778.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNTB2--TANGO6^ENST00000261778.2" ; transcript_name "TANGO6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNTB2--TANGO6 HAVANA gene 1001 17875 . + . FI_gene_label "SNTB2^ENSG00000168807.16" ; ID "SNTB2--TANGO6^SNTB2^ENSG00000168807.16" ; ccdsid "CCDS10873.1" ; exon_id "ENSE00001870740.1" ; exon_number 1 ; gene_id "SNTB2--TANGO6^SNTB2^ENSG00000168807.16" ; gene_name SNTB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137567.6" ; havana_transcript "OTTHUMT00000268945.1" ; hgnc_id "HGNC:11169" ; level 2 ; orig_coord_info "chr16,69187167,69187746,+" ; protein_id "ENSP00000338191.4" ; tag basic appris_principal_1 CCDS ; transcript_id "SNTB2--TANGO6^ENST00000336278.8" ; transcript_name "SNTB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNTB2--TANGO6 HAVANA mRNA 1001 17875 . + . FI_gene_label "SNTB2^ENSG00000168807.16" ; ID "SNTB2--TANGO6^ENST00000336278.8" ; Parent "SNTB2--TANGO6^SNTB2^ENSG00000168807.16" ; ccdsid "CCDS10873.1" ; exon_id "ENSE00001870740.1" ; exon_number 1 ; gene_id "SNTB2--TANGO6^SNTB2^ENSG00000168807.16" ; gene_name SNTB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137567.6" ; havana_transcript "OTTHUMT00000268945.1" ; hgnc_id "HGNC:11169" ; level 2 ; orig_coord_info "chr16,69187167,69187746,+" ; protein_id "ENSP00000338191.4" ; tag basic appris_principal_1 CCDS ; transcript_id "SNTB2--TANGO6^ENST00000336278.8" ; transcript_name "SNTB2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMEM120B--ORAI1 HAVANA gene 1001 14736 . + . FI_gene_label "TMEM120B^ENSG00000188735.13" ; ID "TMEM120B--ORAI1^TMEM120B^ENSG00000188735.13" ; ccdsid "CCDS41852.1" ; exon_id "ENSE00001369336.5" ; exon_number 1 ; gene_id "TMEM120B--ORAI1^TMEM120B^ENSG00000188735.13" ; gene_name TMEM120B ; gene_type protein_coding ; havana_gene "OTTHUMG00000169076.2" ; havana_transcript "OTTHUMT00000402157.1" ; hgnc_id "HGNC:32008" ; level 2 ; orig_coord_info "chr12,121712896,121712964,+" ; protein_id "ENSP00000345152.6" ; tag CCDS ; transcript_id "TMEM120B--ORAI1^ENST00000342607.10" ; transcript_name "TMEM120B-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
TMEM120B--ORAI1 HAVANA mRNA 1001 14736 . + . FI_gene_label "TMEM120B^ENSG00000188735.13" ; ID "TMEM120B--ORAI1^ENST00000342607.10" ; Parent "TMEM120B--ORAI1^TMEM120B^ENSG00000188735.13" ; ccdsid "CCDS41852.1" ; exon_id "ENSE00001369336.5" ; exon_number 1 ; gene_id "TMEM120B--ORAI1^TMEM120B^ENSG00000188735.13" ; gene_name TMEM120B ; gene_type protein_coding ; havana_gene "OTTHUMG00000169076.2" ; havana_transcript "OTTHUMT00000402157.1" ; hgnc_id "HGNC:32008" ; level 2 ; orig_coord_info "chr12,121712896,121712964,+" ; protein_id "ENSP00000345152.6" ; tag CCDS ; transcript_id "TMEM120B--ORAI1^ENST00000342607.10" ; transcript_name "TMEM120B-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
TMEM120B--ORAI1 ENSEMBL gene 21782 24406 . + . FI_gene_label "ORAI1^ENSG00000276045.3" ; ID "TMEM120B--ORAI1^ORAI1^ENSG00000276045.3" ; exon_id "ENSE00003830820.1" ; exon_number 1 ; gene_id "TMEM120B--ORAI1^ORAI1^ENSG00000276045.3" ; gene_name ORAI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169073.3" ; hgnc_id "HGNC:25896" ; level 3 ; orig_coord_info "chr12,121626743,121626865,+" ; protein_id "ENSP00000482568.2" ; tag basic appris_principal_1 ; transcript_id "TMEM120B--ORAI1^ENST00000617316.2" ; transcript_name "ORAI1-202" ; transcript_support_level 1 ; transcript_type protein_coding
TMEM120B--ORAI1 ENSEMBL mRNA 21782 24406 . + . FI_gene_label "ORAI1^ENSG00000276045.3" ; ID "TMEM120B--ORAI1^ENST00000617316.2" ; Parent "TMEM120B--ORAI1^ORAI1^ENSG00000276045.3" ; exon_id "ENSE00003830820.1" ; exon_number 1 ; gene_id "TMEM120B--ORAI1^ORAI1^ENSG00000276045.3" ; gene_name ORAI1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000169073.3" ; hgnc_id "HGNC:25896" ; level 3 ; orig_coord_info "chr12,121626743,121626865,+" ; protein_id "ENSP00000482568.2" ; tag basic appris_principal_1 ; transcript_id "TMEM120B--ORAI1^ENST00000617316.2" ; transcript_name "ORAI1-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC091132.4--AC103810.6 HAVANA gene 3561 4511 . + . FI_gene_label "AC091132.4^ENSG00000267198.1" ; ID "AC091132.4--AC103810.6^AC091132.4^ENSG00000267198.1" ; exon_id "ENSE00002974385.1" ; exon_number 1 ; gene_id "AC091132.4--AC103810.6^AC091132.4^ENSG00000267198.1" ; gene_name "AC091132.4" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180602.1" ; havana_transcript "OTTHUMT00000452149.1" ; level 2 ; orig_coord_info "chr17,45552855,45553267,+" ; tag basic ; transcript_id "AC091132.4--AC103810.6^ENST00000585761.1" ; transcript_name "AC091132.4-205" ; transcript_support_level 4 ; transcript_type lncRNA
AC091132.4--AC103810.6 HAVANA RNA 3561 4511 . + . FI_gene_label "AC091132.4^ENSG00000267198.1" ; ID "AC091132.4--AC103810.6^ENST00000585761.1" ; Parent "AC091132.4--AC103810.6^AC091132.4^ENSG00000267198.1" ; exon_id "ENSE00002974385.1" ; exon_number 1 ; gene_id "AC091132.4--AC103810.6^AC091132.4^ENSG00000267198.1" ; gene_name "AC091132.4" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180602.1" ; havana_transcript "OTTHUMT00000452149.1" ; level 2 ; orig_coord_info "chr17,45552855,45553267,+" ; tag basic ; transcript_id "AC091132.4--AC103810.6^ENST00000585761.1" ; transcript_name "AC091132.4-205" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AC091132.4--AC103810.6 HAVANA gene 11023 11113 . + . FI_gene_label "AC103810.6^ENSG00000272134.1" ; ID "AC091132.4--AC103810.6^AC103810.6^ENSG00000272134.1" ; exon_id "ENSE00003698417.1" ; exon_number 1 ; gene_id "AC091132.4--AC103810.6^AC103810.6^ENSG00000272134.1" ; gene_name "AC103810.6" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000185416.1" ; havana_transcript "OTTHUMT00000470480.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr17,64881091,64881181,+" ; tag basic ; transcript_id "AC091132.4--AC103810.6^ENST00000607821.1" ; transcript_name "AC103810.6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
AC091132.4--AC103810.6 HAVANA RNA 11023 11113 . + . FI_gene_label "AC103810.6^ENSG00000272134.1" ; ID "AC091132.4--AC103810.6^ENST00000607821.1" ; Parent "AC091132.4--AC103810.6^AC103810.6^ENSG00000272134.1" ; exon_id "ENSE00003698417.1" ; exon_number 1 ; gene_id "AC091132.4--AC103810.6^AC103810.6^ENSG00000272134.1" ; gene_name "AC103810.6" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000185416.1" ; havana_transcript "OTTHUMT00000470480.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr17,64881091,64881181,+" ; tag basic ; transcript_id "AC091132.4--AC103810.6^ENST00000607821.1" ; transcript_name "AC103810.6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
AC092807.3--DDAH1 HAVANA gene 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
AC092807.3--DDAH1 HAVANA RNA 1101 8302 . + . FI_gene_label "AC092807.3^ENSG00000282057.1" ; ID "AC092807.3--DDAH1^ENST00000467530.5" ; Parent "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; exon_id "ENSE00001891111.1" ; exon_number 1 ; gene_id "AC092807.3--DDAH1^AC092807.3^ENSG00000282057.1" ; gene_name "AC092807.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000010578.6" ; havana_transcript "OTTHUMT00000029193.2" ; level 2 ; orig_coord_info "chr1,85577984,85578150,-" ; tag basic ; transcript_id "AC092807.3--DDAH1^ENST00000467530.5" ; transcript_name "AC092807.3-203" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
FBXO25--AL669831.1 HAVANA gene 27445 33435 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "FBXO25--AL669831.1^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "FBXO25--AL669831.1^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "FBXO25--AL669831.1^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
FBXO25--AL669831.1 HAVANA RNA 27445 33435 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "FBXO25--AL669831.1^ENST00000428504.2" ; Parent "FBXO25--AL669831.1^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "FBXO25--AL669831.1^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "FBXO25--AL669831.1^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
IGFL1P2--HIF3A HAVANA gene 1001 1439 . + . FI_gene_label "IGFL1P2^ENSG00000268238.1" ; ID "IGFL1P2--HIF3A^IGFL1P2^ENSG00000268238.1" ; exon_id "ENSE00003064899.1" ; exon_number 1 ; gene_id "IGFL1P2--HIF3A^IGFL1P2^ENSG00000268238.1" ; gene_name IGFL1P2 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000182502.1" ; havana_transcript "OTTHUMT00000461725.1" ; hgnc_id "HGNC:32957" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr19,46260801,46260858,-" ; tag basic ; transcript_id "IGFL1P2--HIF3A^ENST00000593820.1" ; transcript_name "IGFL1P2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
IGFL1P2--HIF3A HAVANA RNA 1001 1439 . + . FI_gene_label "IGFL1P2^ENSG00000268238.1" ; ID "IGFL1P2--HIF3A^ENST00000593820.1" ; Parent "IGFL1P2--HIF3A^IGFL1P2^ENSG00000268238.1" ; exon_id "ENSE00003064899.1" ; exon_number 1 ; gene_id "IGFL1P2--HIF3A^IGFL1P2^ENSG00000268238.1" ; gene_name IGFL1P2 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000182502.1" ; havana_transcript "OTTHUMT00000461725.1" ; hgnc_id "HGNC:32957" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr19,46260801,46260858,-" ; tag basic ; transcript_id "IGFL1P2--HIF3A^ENST00000593820.1" ; transcript_name "IGFL1P2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
274 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
451 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 43 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 0 second) ------
GFF3 file parsed