Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/8da60dc5dbe2f03fcaeee09dcb6a8a/659_cfy-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/002f9be44e579ec2cab391fe9e5491/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ea/002f9be44e579ec2cab391fe9e5491/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory