Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/f4602cf29dda631963e989470f73e2/fi_workdir/659_eZ4-T1-TRNA-1_B23MHV2LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/78b494707d40bdef1e52f5c177ce5e/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/78b494707d40bdef1e52f5c177ce5e/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 6941
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 6941
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:6941
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC138409.2--NAIP ENSEMBL gene 21878 43057 . + . FI_gene_label "NAIP^ENSG00000249437.8" ; ID "AC138409.2--NAIP^NAIP^ENSG00000249437.8" ; ccdsid "CCDS4009.1" ; exon_id "ENSE00002284906.1" ; exon_number 2 ; gene_id "AC138409.2--NAIP^NAIP^ENSG00000249437.8" ; gene_name NAIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000163318.7" ; hgnc_id "HGNC:7634" ; level 3 ; orig_coord_info "chr5,71012348,71012915,-" ; protein_id "ENSP00000443944.1" ; tag basic appris_principal_2 CCDS ; transcript_id "AC138409.2--NAIP^ENST00000194097.8" ; transcript_name "NAIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC138409.2--NAIP ENSEMBL mRNA 21878 43057 . + . FI_gene_label "NAIP^ENSG00000249437.8" ; ID "AC138409.2--NAIP^ENST00000194097.8" ; Parent "AC138409.2--NAIP^NAIP^ENSG00000249437.8" ; ccdsid "CCDS4009.1" ; exon_id "ENSE00002284906.1" ; exon_number 2 ; gene_id "AC138409.2--NAIP^NAIP^ENSG00000249437.8" ; gene_name NAIP ; gene_type protein_coding ; havana_gene "OTTHUMG00000163318.7" ; hgnc_id "HGNC:7634" ; level 3 ; orig_coord_info "chr5,71012348,71012915,-" ; protein_id "ENSP00000443944.1" ; tag basic appris_principal_2 CCDS ; transcript_id "AC138409.2--NAIP^ENST00000194097.8" ; transcript_name "NAIP-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AGPAT5--AL357055.2 HAVANA gene 1001 16554 . + . FI_gene_label "AGPAT5^ENSG00000155189.12" ; ID "AGPAT5--AL357055.2^AGPAT5^ENSG00000155189.12" ; ccdsid "CCDS34796.1" ; exon_id "ENSE00001282669.8" ; exon_number 1 ; gene_id "AGPAT5--AL357055.2^AGPAT5^ENSG00000155189.12" ; gene_name AGPAT5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163656.5" ; havana_transcript "OTTHUMT00000374684.3" ; hgnc_id "HGNC:20886" ; level 2 ; orig_coord_info "chr8,6708669,6708887,+" ; protein_id "ENSP00000285518.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AGPAT5--AL357055.2^ENST00000285518.11" ; transcript_name "AGPAT5-201" ; transcript_support_level 1 ; transcript_type protein_coding
AGPAT5--AL357055.2 HAVANA mRNA 1001 16554 . + . FI_gene_label "AGPAT5^ENSG00000155189.12" ; ID "AGPAT5--AL357055.2^ENST00000285518.11" ; Parent "AGPAT5--AL357055.2^AGPAT5^ENSG00000155189.12" ; ccdsid "CCDS34796.1" ; exon_id "ENSE00001282669.8" ; exon_number 1 ; gene_id "AGPAT5--AL357055.2^AGPAT5^ENSG00000155189.12" ; gene_name AGPAT5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163656.5" ; havana_transcript "OTTHUMT00000374684.3" ; hgnc_id "HGNC:20886" ; level 2 ; orig_coord_info "chr8,6708669,6708887,+" ; protein_id "ENSP00000285518.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AGPAT5--AL357055.2^ENST00000285518.11" ; transcript_name "AGPAT5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AGPAT5--MAGI3 HAVANA gene 1001 16554 . + . FI_gene_label "AGPAT5^ENSG00000155189.12" ; ID "AGPAT5--MAGI3^AGPAT5^ENSG00000155189.12" ; ccdsid "CCDS34796.1" ; exon_id "ENSE00001282669.8" ; exon_number 1 ; gene_id "AGPAT5--MAGI3^AGPAT5^ENSG00000155189.12" ; gene_name AGPAT5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163656.5" ; havana_transcript "OTTHUMT00000374684.3" ; hgnc_id "HGNC:20886" ; level 2 ; orig_coord_info "chr8,6708669,6708887,+" ; protein_id "ENSP00000285518.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AGPAT5--MAGI3^ENST00000285518.11" ; transcript_name "AGPAT5-201" ; transcript_support_level 1 ; transcript_type protein_coding
AGPAT5--MAGI3 HAVANA mRNA 1001 16554 . + . FI_gene_label "AGPAT5^ENSG00000155189.12" ; ID "AGPAT5--MAGI3^ENST00000285518.11" ; Parent "AGPAT5--MAGI3^AGPAT5^ENSG00000155189.12" ; ccdsid "CCDS34796.1" ; exon_id "ENSE00001282669.8" ; exon_number 1 ; gene_id "AGPAT5--MAGI3^AGPAT5^ENSG00000155189.12" ; gene_name AGPAT5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163656.5" ; havana_transcript "OTTHUMT00000374684.3" ; hgnc_id "HGNC:20886" ; level 2 ; orig_coord_info "chr8,6708669,6708887,+" ; protein_id "ENSP00000285518.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AGPAT5--MAGI3^ENST00000285518.11" ; transcript_name "AGPAT5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AGPAT5--MAGI3 HAVANA gene 19555 49663 . + . FI_gene_label "MAGI3^ENSG00000081026.19" ; ID "AGPAT5--MAGI3^MAGI3^ENSG00000081026.19" ; ccdsid "CCDS44196.1" ; exon_id "ENSE00001940018.2" ; exon_number 1 ; gene_id "AGPAT5--MAGI3^MAGI3^ENSG00000081026.19" ; gene_name MAGI3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011737.4" ; havana_transcript "OTTHUMT00000032429.2" ; hgnc_id "HGNC:29647" ; level 1 ; orig_coord_info "chr1,113391034,113391349,+" ; protein_id "ENSP00000304604.9" ; tag basic MANE_Select exp_conf CCDS ; transcript_id "AGPAT5--MAGI3^ENST00000307546.14" ; transcript_name "MAGI3-201" ; transcript_support_level 5 ; transcript_type protein_coding
AGPAT5--MAGI3 HAVANA mRNA 19555 49663 . + . FI_gene_label "MAGI3^ENSG00000081026.19" ; ID "AGPAT5--MAGI3^ENST00000307546.14" ; Parent "AGPAT5--MAGI3^MAGI3^ENSG00000081026.19" ; ccdsid "CCDS44196.1" ; exon_id "ENSE00001940018.2" ; exon_number 1 ; gene_id "AGPAT5--MAGI3^MAGI3^ENSG00000081026.19" ; gene_name MAGI3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000011737.4" ; havana_transcript "OTTHUMT00000032429.2" ; hgnc_id "HGNC:29647" ; level 1 ; orig_coord_info "chr1,113391034,113391349,+" ; protein_id "ENSP00000304604.9" ; tag basic MANE_Select exp_conf CCDS ; transcript_id "AGPAT5--MAGI3^ENST00000307546.14" ; transcript_name "MAGI3-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AL353637.1--PRUNE2 ENSEMBL gene 24921 41877 . + . FI_gene_label "PRUNE2^ENSG00000106772.18" ; ID "AL353637.1--PRUNE2^PRUNE2^ENSG00000106772.18" ; exon_id "ENSE00003720311.1" ; exon_number 2 ; gene_id "AL353637.1--PRUNE2^PRUNE2^ENSG00000106772.18" ; gene_name PRUNE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020047.5" ; hgnc_id "HGNC:25209" ; level 3 ; orig_coord_info "chr9,76655423,76655480,-" ; protein_id "ENSP00000223609.7" ; tag basic ; transcript_id "AL353637.1--PRUNE2^ENST00000223609.10" ; transcript_name "PRUNE2-201" ; transcript_support_level 2 ; transcript_type protein_coding
AL353637.1--PRUNE2 ENSEMBL mRNA 24921 41877 . + . FI_gene_label "PRUNE2^ENSG00000106772.18" ; ID "AL353637.1--PRUNE2^ENST00000223609.10" ; Parent "AL353637.1--PRUNE2^PRUNE2^ENSG00000106772.18" ; exon_id "ENSE00003720311.1" ; exon_number 2 ; gene_id "AL353637.1--PRUNE2^PRUNE2^ENSG00000106772.18" ; gene_name PRUNE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020047.5" ; hgnc_id "HGNC:25209" ; level 3 ; orig_coord_info "chr9,76655423,76655480,-" ; protein_id "ENSP00000223609.7" ; tag basic ; transcript_id "AL353637.1--PRUNE2^ENST00000223609.10" ; transcript_name "PRUNE2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AL353637.2--PRUNE2 ENSEMBL gene 28049 45005 . + . FI_gene_label "PRUNE2^ENSG00000106772.18" ; ID "AL353637.2--PRUNE2^PRUNE2^ENSG00000106772.18" ; exon_id "ENSE00003720311.1" ; exon_number 2 ; gene_id "AL353637.2--PRUNE2^PRUNE2^ENSG00000106772.18" ; gene_name PRUNE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020047.5" ; hgnc_id "HGNC:25209" ; level 3 ; orig_coord_info "chr9,76655423,76655480,-" ; protein_id "ENSP00000223609.7" ; tag basic ; transcript_id "AL353637.2--PRUNE2^ENST00000223609.10" ; transcript_name "PRUNE2-201" ; transcript_support_level 2 ; transcript_type protein_coding
AL353637.2--PRUNE2 ENSEMBL mRNA 28049 45005 . + . FI_gene_label "PRUNE2^ENSG00000106772.18" ; ID "AL353637.2--PRUNE2^ENST00000223609.10" ; Parent "AL353637.2--PRUNE2^PRUNE2^ENSG00000106772.18" ; exon_id "ENSE00003720311.1" ; exon_number 2 ; gene_id "AL353637.2--PRUNE2^PRUNE2^ENSG00000106772.18" ; gene_name PRUNE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020047.5" ; hgnc_id "HGNC:25209" ; level 3 ; orig_coord_info "chr9,76655423,76655480,-" ; protein_id "ENSP00000223609.7" ; tag basic ; transcript_id "AL353637.2--PRUNE2^ENST00000223609.10" ; transcript_name "PRUNE2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AL512590.2--CCDC180 HAVANA gene 14599 56298 . + . FI_gene_label "CCDC180^ENSG00000197816.16" ; ID "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; exon_id "ENSE00003898006.1" ; exon_number 2 ; gene_id "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; gene_name CCDC180 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167001.3" ; havana_transcript "OTTHUMT00000383515.4" ; hgnc_id "HGNC:29303" ; level 2 ; orig_coord_info "chr9,97308064,97308132,+" ; protein_id "ENSP00000434727.2" ; tag basic MANE_Select appris_principal_1 ; transcript_id "AL512590.2--CCDC180^ENST00000529487.3" ; transcript_name "CCDC180-210" ; transcript_support_level 1 ; transcript_type protein_coding
AL512590.2--CCDC180 HAVANA mRNA 14599 56298 . + . FI_gene_label "CCDC180^ENSG00000197816.16" ; ID "AL512590.2--CCDC180^ENST00000529487.3" ; Parent "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; exon_id "ENSE00003898006.1" ; exon_number 2 ; gene_id "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; gene_name CCDC180 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167001.3" ; havana_transcript "OTTHUMT00000383515.4" ; hgnc_id "HGNC:29303" ; level 2 ; orig_coord_info "chr9,97308064,97308132,+" ; protein_id "ENSP00000434727.2" ; tag basic MANE_Select appris_principal_1 ; transcript_id "AL512590.2--CCDC180^ENST00000529487.3" ; transcript_name "CCDC180-210" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C1QTNF3--AMACR HAVANA gene 1001 8952 . + . FI_gene_label "C1QTNF3^ENSG00000082196.21" ; ID "C1QTNF3--AMACR^C1QTNF3^ENSG00000082196.21" ; ccdsid "CCDS3904.1" ; exon_id "ENSE00001898423.1" ; exon_number 1 ; gene_id "C1QTNF3--AMACR^C1QTNF3^ENSG00000082196.21" ; gene_name C1QTNF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090735.5" ; havana_transcript "OTTHUMT00000207469.1" ; hgnc_id "HGNC:14326" ; level 2 ; orig_coord_info "chr5,34043042,34043125,-" ; protein_id "ENSP00000231338.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "C1QTNF3--AMACR^ENST00000231338.7" ; transcript_name "C1QTNF3-201" ; transcript_support_level 1 ; transcript_type protein_coding
C1QTNF3--AMACR HAVANA mRNA 1001 8952 . + . FI_gene_label "C1QTNF3^ENSG00000082196.21" ; ID "C1QTNF3--AMACR^ENST00000231338.7" ; Parent "C1QTNF3--AMACR^C1QTNF3^ENSG00000082196.21" ; ccdsid "CCDS3904.1" ; exon_id "ENSE00001898423.1" ; exon_number 1 ; gene_id "C1QTNF3--AMACR^C1QTNF3^ENSG00000082196.21" ; gene_name C1QTNF3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090735.5" ; havana_transcript "OTTHUMT00000207469.1" ; hgnc_id "HGNC:14326" ; level 2 ; orig_coord_info "chr5,34043042,34043125,-" ; protein_id "ENSP00000231338.7" ; tag basic appris_alternative_1 CCDS ; transcript_id "C1QTNF3--AMACR^ENST00000231338.7" ; transcript_name "C1QTNF3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C1QTNF3--AMACR HAVANA gene 13602 24394 . + . FI_gene_label "AMACR^ENSG00000242110.8" ; ID "C1QTNF3--AMACR^AMACR^ENSG00000242110.8" ; ccdsid "CCDS3902.1" ; exon_id "ENSE00001953485.2" ; exon_number 1 ; gene_id "C1QTNF3--AMACR^AMACR^ENSG00000242110.8" ; gene_name AMACR ; gene_type protein_coding ; havana_gene "OTTHUMG00000090734.3" ; havana_transcript "OTTHUMT00000207467.2" ; hgnc_id "HGNC:451" ; level 2 ; orig_coord_info "chr5,34007773,34008019,-" ; protein_id "ENSP00000334424.6" ; tag basic MANE_Select CCDS ; transcript_id "C1QTNF3--AMACR^ENST00000335606.11" ; transcript_name "AMACR-201" ; transcript_support_level 1 ; transcript_type protein_coding
C1QTNF3--AMACR HAVANA mRNA 13602 24394 . + . FI_gene_label "AMACR^ENSG00000242110.8" ; ID "C1QTNF3--AMACR^ENST00000335606.11" ; Parent "C1QTNF3--AMACR^AMACR^ENSG00000242110.8" ; ccdsid "CCDS3902.1" ; exon_id "ENSE00001953485.2" ; exon_number 1 ; gene_id "C1QTNF3--AMACR^AMACR^ENSG00000242110.8" ; gene_name AMACR ; gene_type protein_coding ; havana_gene "OTTHUMG00000090734.3" ; havana_transcript "OTTHUMT00000207467.2" ; hgnc_id "HGNC:451" ; level 2 ; orig_coord_info "chr5,34007773,34008019,-" ; protein_id "ENSP00000334424.6" ; tag basic MANE_Select CCDS ; transcript_id "C1QTNF3--AMACR^ENST00000335606.11" ; transcript_name "AMACR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC30--CPNE7 HAVANA gene 61318 76557 . + . FI_gene_label "CPNE7^ENSG00000178773.15" ; ID "CCDC30--CPNE7^CPNE7^ENSG00000178773.15" ; ccdsid "CCDS10980.1" ; exon_id "ENSE00001220628.2" ; exon_number 1 ; gene_id "CCDC30--CPNE7^CPNE7^ENSG00000178773.15" ; gene_name CPNE7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000138051.6" ; havana_transcript "OTTHUMT00000269929.2" ; hgnc_id "HGNC:2320" ; level 2 ; orig_coord_info "chr16,89575898,89576071,+" ; protein_id "ENSP00000268720.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "CCDC30--CPNE7^ENST00000268720.9" ; transcript_name "CPNE7-201" ; transcript_support_level 1 ; transcript_type protein_coding
CCDC30--CPNE7 HAVANA mRNA 61318 76557 . + . FI_gene_label "CPNE7^ENSG00000178773.15" ; ID "CCDC30--CPNE7^ENST00000268720.9" ; Parent "CCDC30--CPNE7^CPNE7^ENSG00000178773.15" ; ccdsid "CCDS10980.1" ; exon_id "ENSE00001220628.2" ; exon_number 1 ; gene_id "CCDC30--CPNE7^CPNE7^ENSG00000178773.15" ; gene_name CPNE7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000138051.6" ; havana_transcript "OTTHUMT00000269929.2" ; hgnc_id "HGNC:2320" ; level 2 ; orig_coord_info "chr16,89575898,89576071,+" ; protein_id "ENSP00000268720.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "CCDC30--CPNE7^ENST00000268720.9" ; transcript_name "CPNE7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CCDC30--CPNE7 HAVANA gene 8792 55224 . + . FI_gene_label "CCDC30^ENSG00000186409.18" ; ID "CCDC30--CPNE7^CCDC30^ENSG00000186409.18" ; exon_id "ENSE00003881847.1" ; exon_number 2 ; gene_id "CCDC30--CPNE7^CCDC30^ENSG00000186409.18" ; gene_name CCDC30 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007334.18" ; havana_transcript "OTTHUMT00000504705.2" ; hgnc_id "HGNC:26103" ; level 2 ; orig_coord_info "chr1,42482720,42482816,+" ; protein_id "ENSP00000340378.5" ; tag alternative_5_UTR not_organism_supported basic appris_alternative_2 ; transcript_id "CCDC30--CPNE7^ENST00000340612.6" ; transcript_name "CCDC30-201" ; transcript_support_level 5 ; transcript_type protein_coding
CCDC30--CPNE7 HAVANA mRNA 8792 55224 . + . FI_gene_label "CCDC30^ENSG00000186409.18" ; ID "CCDC30--CPNE7^ENST00000340612.6" ; Parent "CCDC30--CPNE7^CCDC30^ENSG00000186409.18" ; exon_id "ENSE00003881847.1" ; exon_number 2 ; gene_id "CCDC30--CPNE7^CCDC30^ENSG00000186409.18" ; gene_name CCDC30 ; gene_type protein_coding ; havana_gene "OTTHUMG00000007334.18" ; havana_transcript "OTTHUMT00000504705.2" ; hgnc_id "HGNC:26103" ; level 2 ; orig_coord_info "chr1,42482720,42482816,+" ; protein_id "ENSP00000340378.5" ; tag alternative_5_UTR not_organism_supported basic appris_alternative_2 ; transcript_id "CCDC30--CPNE7^ENST00000340612.6" ; transcript_name "CCDC30-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
CEP112--CPQ HAVANA gene 44924 62216 . + . FI_gene_label "CPQ^ENSG00000104324.16" ; ID "CEP112--CPQ^CPQ^ENSG00000104324.16" ; ccdsid "CCDS6273.1" ; exon_id "ENSE00001156717.1" ; exon_number 2 ; gene_id "CEP112--CPQ^CPQ^ENSG00000104324.16" ; gene_name CPQ ; gene_type protein_coding ; havana_gene "OTTHUMG00000164690.5" ; havana_transcript "OTTHUMT00000379757.3" ; hgnc_id "HGNC:16910" ; level 2 ; orig_coord_info "chr8,96784898,96785330,+" ; protein_id "ENSP00000220763.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CEP112--CPQ^ENST00000220763.10" ; transcript_name "CPQ-201" ; transcript_support_level 1 ; transcript_type protein_coding
CEP112--CPQ HAVANA mRNA 44924 62216 . + . FI_gene_label "CPQ^ENSG00000104324.16" ; ID "CEP112--CPQ^ENST00000220763.10" ; Parent "CEP112--CPQ^CPQ^ENSG00000104324.16" ; ccdsid "CCDS6273.1" ; exon_id "ENSE00001156717.1" ; exon_number 2 ; gene_id "CEP112--CPQ^CPQ^ENSG00000104324.16" ; gene_name CPQ ; gene_type protein_coding ; havana_gene "OTTHUMG00000164690.5" ; havana_transcript "OTTHUMT00000379757.3" ; hgnc_id "HGNC:16910" ; level 2 ; orig_coord_info "chr8,96784898,96785330,+" ; protein_id "ENSP00000220763.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CEP112--CPQ^ENST00000220763.10" ; transcript_name "CPQ-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CEP112--CPQ HAVANA gene 29887 41644 . + . FI_gene_label "CEP112^ENSG00000154240.17" ; ID "CEP112--CPQ^CEP112^ENSG00000154240.17" ; ccdsid "CCDS32711.1" ; exon_id "ENSE00001276658.7" ; exon_number 1 ; gene_id "CEP112--CPQ^CEP112^ENSG00000154240.17" ; gene_name CEP112 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179474.6" ; havana_transcript "OTTHUMT00000446583.1" ; hgnc_id "HGNC:28514" ; level 2 ; orig_coord_info "chr17,65826138,65826299,-" ; protein_id "ENSP00000320592.5" ; tag basic CCDS ; transcript_id "CEP112--CPQ^ENST00000317442.12" ; transcript_name "CEP112-201" ; transcript_support_level 1 ; transcript_type protein_coding
CEP112--CPQ HAVANA mRNA 29887 41644 . + . FI_gene_label "CEP112^ENSG00000154240.17" ; ID "CEP112--CPQ^ENST00000317442.12" ; Parent "CEP112--CPQ^CEP112^ENSG00000154240.17" ; ccdsid "CCDS32711.1" ; exon_id "ENSE00001276658.7" ; exon_number 1 ; gene_id "CEP112--CPQ^CEP112^ENSG00000154240.17" ; gene_name CEP112 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179474.6" ; havana_transcript "OTTHUMT00000446583.1" ; hgnc_id "HGNC:28514" ; level 2 ; orig_coord_info "chr17,65826138,65826299,-" ; protein_id "ENSP00000320592.5" ; tag basic CCDS ; transcript_id "CEP112--CPQ^ENST00000317442.12" ; transcript_name "CEP112-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CORO1C--CRY1 HAVANA gene 22725 37307 . + . FI_gene_label "CRY1^ENSG00000008405.12" ; ID "CORO1C--CRY1^CRY1^ENSG00000008405.12" ; ccdsid "CCDS9112.1" ; exon_id "ENSE00001165053.6" ; exon_number 1 ; gene_id "CORO1C--CRY1^CRY1^ENSG00000008405.12" ; gene_name CRY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170005.3" ; havana_transcript "OTTHUMT00000406827.3" ; hgnc_id "HGNC:2384" ; level 2 ; orig_coord_info "chr12,107092804,107092961,-" ; protein_id "ENSP00000008527.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CORO1C--CRY1^ENST00000008527.10" ; transcript_name "CRY1-201" ; transcript_support_level 1 ; transcript_type protein_coding
CORO1C--CRY1 HAVANA mRNA 22725 37307 . + . FI_gene_label "CRY1^ENSG00000008405.12" ; ID "CORO1C--CRY1^ENST00000008527.10" ; Parent "CORO1C--CRY1^CRY1^ENSG00000008405.12" ; ccdsid "CCDS9112.1" ; exon_id "ENSE00001165053.6" ; exon_number 1 ; gene_id "CORO1C--CRY1^CRY1^ENSG00000008405.12" ; gene_name CRY1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000170005.3" ; havana_transcript "OTTHUMT00000406827.3" ; hgnc_id "HGNC:2384" ; level 2 ; orig_coord_info "chr12,107092804,107092961,-" ; protein_id "ENSP00000008527.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CORO1C--CRY1^ENST00000008527.10" ; transcript_name "CRY1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CORO1C--CRY1 HAVANA gene 1009 19724 . + . FI_gene_label "CORO1C^ENSG00000110880.11" ; ID "CORO1C--CRY1^CORO1C^ENSG00000110880.11" ; ccdsid "CCDS9120.1" ; exon_id "ENSE00003570790.1" ; exon_number 2 ; gene_id "CORO1C--CRY1^CORO1C^ENSG00000110880.11" ; gene_name CORO1C ; gene_type protein_coding ; havana_gene "OTTHUMG00000169381.3" ; havana_transcript "OTTHUMT00000403802.1" ; hgnc_id "HGNC:2254" ; level 2 ; orig_coord_info "chr12,108701124,108701318,-" ; protein_id "ENSP00000261401.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CORO1C--CRY1^ENST00000261401.8" ; transcript_name "CORO1C-201" ; transcript_support_level 1 ; transcript_type protein_coding
CORO1C--CRY1 HAVANA mRNA 1009 19724 . + . FI_gene_label "CORO1C^ENSG00000110880.11" ; ID "CORO1C--CRY1^ENST00000261401.8" ; Parent "CORO1C--CRY1^CORO1C^ENSG00000110880.11" ; ccdsid "CCDS9120.1" ; exon_id "ENSE00003570790.1" ; exon_number 2 ; gene_id "CORO1C--CRY1^CORO1C^ENSG00000110880.11" ; gene_name CORO1C ; gene_type protein_coding ; havana_gene "OTTHUMG00000169381.3" ; havana_transcript "OTTHUMT00000403802.1" ; hgnc_id "HGNC:2254" ; level 2 ; orig_coord_info "chr12,108701124,108701318,-" ; protein_id "ENSP00000261401.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CORO1C--CRY1^ENST00000261401.8" ; transcript_name "CORO1C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CRISPLD2--TRANK1 HAVANA gene 1001 24386 . + . FI_gene_label "CRISPLD2^ENSG00000103196.12" ; ID "CRISPLD2--TRANK1^CRISPLD2^ENSG00000103196.12" ; ccdsid "CCDS10949.1" ; exon_id "ENSE00003590158.1" ; exon_number 2 ; gene_id "CRISPLD2--TRANK1^CRISPLD2^ENSG00000103196.12" ; gene_name CRISPLD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137644.7" ; havana_transcript "OTTHUMT00000269086.4" ; hgnc_id "HGNC:25248" ; level 2 ; orig_coord_info "chr16,84838496,84838735,+" ; protein_id "ENSP00000262424.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "CRISPLD2--TRANK1^ENST00000262424.10" ; transcript_name "CRISPLD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
CRISPLD2--TRANK1 HAVANA mRNA 1001 24386 . + . FI_gene_label "CRISPLD2^ENSG00000103196.12" ; ID "CRISPLD2--TRANK1^ENST00000262424.10" ; Parent "CRISPLD2--TRANK1^CRISPLD2^ENSG00000103196.12" ; ccdsid "CCDS10949.1" ; exon_id "ENSE00003590158.1" ; exon_number 2 ; gene_id "CRISPLD2--TRANK1^CRISPLD2^ENSG00000103196.12" ; gene_name CRISPLD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137644.7" ; havana_transcript "OTTHUMT00000269086.4" ; hgnc_id "HGNC:25248" ; level 2 ; orig_coord_info "chr16,84838496,84838735,+" ; protein_id "ENSP00000262424.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "CRISPLD2--TRANK1^ENST00000262424.10" ; transcript_name "CRISPLD2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CRISPLD2--TRANK1 HAVANA gene 29516 63122 . + . FI_gene_label "TRANK1^ENSG00000168016.15" ; ID "CRISPLD2--TRANK1^TRANK1^ENSG00000168016.15" ; ccdsid "CCDS46789.2" ; exon_id "ENSE00003664884.1" ; exon_number 1 ; gene_id "CRISPLD2--TRANK1^TRANK1^ENSG00000168016.15" ; gene_name TRANK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155848.6" ; havana_transcript "OTTHUMT00000369655.2" ; hgnc_id "HGNC:29011" ; level 2 ; orig_coord_info "chr3,36944787,36944809,-" ; protein_id "ENSP00000416168.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "CRISPLD2--TRANK1^ENST00000429976.5" ; transcript_name "TRANK1-201" ; transcript_support_level 5 ; transcript_type protein_coding
CRISPLD2--TRANK1 HAVANA mRNA 29516 63122 . + . FI_gene_label "TRANK1^ENSG00000168016.15" ; ID "CRISPLD2--TRANK1^ENST00000429976.5" ; Parent "CRISPLD2--TRANK1^TRANK1^ENSG00000168016.15" ; ccdsid "CCDS46789.2" ; exon_id "ENSE00003664884.1" ; exon_number 1 ; gene_id "CRISPLD2--TRANK1^TRANK1^ENSG00000168016.15" ; gene_name TRANK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000155848.6" ; havana_transcript "OTTHUMT00000369655.2" ; hgnc_id "HGNC:29011" ; level 2 ; orig_coord_info "chr3,36944787,36944809,-" ; protein_id "ENSP00000416168.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "CRISPLD2--TRANK1^ENST00000429976.5" ; transcript_name "TRANK1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
DDX42--AC005670.3 HAVANA gene 1588 21420 . + . FI_gene_label "DDX42^ENSG00000198231.13" ; ID "DDX42--AC005670.3^DDX42^ENSG00000198231.13" ; exon_id "ENSE00003656551.1" ; exon_number 2 ; gene_id "DDX42--AC005670.3^DDX42^ENSG00000198231.13" ; gene_name DDX42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179011.5" ; havana_transcript "OTTHUMT00000444370.2" ; hgnc_id "HGNC:18676" ; level 2 ; orig_coord_info "chr17,63792548,63792562,+" ; protein_id "ENSP00000352308.5" ; tag basic appris_alternative_2 ; transcript_id "DDX42--AC005670.3^ENST00000359353.9" ; transcript_name "DDX42-201" ; transcript_support_level 5 ; transcript_type protein_coding
DDX42--AC005670.3 HAVANA mRNA 1588 21420 . + . FI_gene_label "DDX42^ENSG00000198231.13" ; ID "DDX42--AC005670.3^ENST00000359353.9" ; Parent "DDX42--AC005670.3^DDX42^ENSG00000198231.13" ; exon_id "ENSE00003656551.1" ; exon_number 2 ; gene_id "DDX42--AC005670.3^DDX42^ENSG00000198231.13" ; gene_name DDX42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179011.5" ; havana_transcript "OTTHUMT00000444370.2" ; hgnc_id "HGNC:18676" ; level 2 ; orig_coord_info "chr17,63792548,63792562,+" ; protein_id "ENSP00000352308.5" ; tag basic appris_alternative_2 ; transcript_id "DDX42--AC005670.3^ENST00000359353.9" ; transcript_name "DDX42-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
DDX42--LRRC37A17P HAVANA gene 1588 21420 . + . FI_gene_label "DDX42^ENSG00000198231.13" ; ID "DDX42--LRRC37A17P^DDX42^ENSG00000198231.13" ; exon_id "ENSE00003656551.1" ; exon_number 2 ; gene_id "DDX42--LRRC37A17P^DDX42^ENSG00000198231.13" ; gene_name DDX42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179011.5" ; havana_transcript "OTTHUMT00000444370.2" ; hgnc_id "HGNC:18676" ; level 2 ; orig_coord_info "chr17,63792548,63792562,+" ; protein_id "ENSP00000352308.5" ; tag basic appris_alternative_2 ; transcript_id "DDX42--LRRC37A17P^ENST00000359353.9" ; transcript_name "DDX42-201" ; transcript_support_level 5 ; transcript_type protein_coding
DDX42--LRRC37A17P HAVANA mRNA 1588 21420 . + . FI_gene_label "DDX42^ENSG00000198231.13" ; ID "DDX42--LRRC37A17P^ENST00000359353.9" ; Parent "DDX42--LRRC37A17P^DDX42^ENSG00000198231.13" ; exon_id "ENSE00003656551.1" ; exon_number 2 ; gene_id "DDX42--LRRC37A17P^DDX42^ENSG00000198231.13" ; gene_name DDX42 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179011.5" ; havana_transcript "OTTHUMT00000444370.2" ; hgnc_id "HGNC:18676" ; level 2 ; orig_coord_info "chr17,63792548,63792562,+" ; protein_id "ENSP00000352308.5" ; tag basic appris_alternative_2 ; transcript_id "DDX42--LRRC37A17P^ENST00000359353.9" ; transcript_name "DDX42-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
FBXO25--AC240565.1 HAVANA gene 2640 15007 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "FBXO25--AC240565.1^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
FBXO25--AC240565.1 HAVANA mRNA 2640 15007 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "FBXO25--AC240565.1^ENST00000276326.9" ; Parent "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "FBXO25--AC240565.1^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FOXB2--PRUNE2 ENSEMBL gene 25210 42166 . + . FI_gene_label "PRUNE2^ENSG00000106772.18" ; ID "FOXB2--PRUNE2^PRUNE2^ENSG00000106772.18" ; exon_id "ENSE00003720311.1" ; exon_number 2 ; gene_id "FOXB2--PRUNE2^PRUNE2^ENSG00000106772.18" ; gene_name PRUNE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020047.5" ; hgnc_id "HGNC:25209" ; level 3 ; orig_coord_info "chr9,76655423,76655480,-" ; protein_id "ENSP00000223609.7" ; tag basic ; transcript_id "FOXB2--PRUNE2^ENST00000223609.10" ; transcript_name "PRUNE2-201" ; transcript_support_level 2 ; transcript_type protein_coding
FOXB2--PRUNE2 ENSEMBL mRNA 25210 42166 . + . FI_gene_label "PRUNE2^ENSG00000106772.18" ; ID "FOXB2--PRUNE2^ENST00000223609.10" ; Parent "FOXB2--PRUNE2^PRUNE2^ENSG00000106772.18" ; exon_id "ENSE00003720311.1" ; exon_number 2 ; gene_id "FOXB2--PRUNE2^PRUNE2^ENSG00000106772.18" ; gene_name PRUNE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020047.5" ; hgnc_id "HGNC:25209" ; level 3 ; orig_coord_info "chr9,76655423,76655480,-" ; protein_id "ENSP00000223609.7" ; tag basic ; transcript_id "FOXB2--PRUNE2^ENST00000223609.10" ; transcript_name "PRUNE2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
FOXB2--PRUNE2 HAVANA gene 1001 2299 . + . FI_gene_label "FOXB2^ENSG00000204612.1" ; ID "FOXB2--PRUNE2^FOXB2^ENSG00000204612.1" ; ccdsid "CCDS35045.1" ; exon_id "ENSE00001471429.1" ; exon_number 1 ; gene_id "FOXB2--PRUNE2^FOXB2^ENSG00000204612.1" ; gene_name FOXB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020051.2" ; havana_transcript "OTTHUMT00000052745.2" ; hgnc_id "HGNC:23315" ; level 2 ; orig_coord_info "chr9,77019655,77020950,+" ; protein_id "ENSP00000365898.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FOXB2--PRUNE2^ENST00000376708.1" ; transcript_name "FOXB2-201" ; transcript_support_level NA ; transcript_type protein_coding
FOXB2--PRUNE2 HAVANA mRNA 1001 2299 . + . FI_gene_label "FOXB2^ENSG00000204612.1" ; ID "FOXB2--PRUNE2^ENST00000376708.1" ; Parent "FOXB2--PRUNE2^FOXB2^ENSG00000204612.1" ; ccdsid "CCDS35045.1" ; exon_id "ENSE00001471429.1" ; exon_number 1 ; gene_id "FOXB2--PRUNE2^FOXB2^ENSG00000204612.1" ; gene_name FOXB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000020051.2" ; havana_transcript "OTTHUMT00000052745.2" ; hgnc_id "HGNC:23315" ; level 2 ; orig_coord_info "chr9,77019655,77020950,+" ; protein_id "ENSP00000365898.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "FOXB2--PRUNE2^ENST00000376708.1" ; transcript_name "FOXB2-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
KAT6A--TAC4 HAVANA gene 1008 38830 . + . FI_gene_label "KAT6A^ENSG00000083168.11" ; ID "KAT6A--TAC4^KAT6A^ENSG00000083168.11" ; ccdsid "CCDS6124.1" ; exon_id "ENSE00002107560.1" ; exon_number 2 ; gene_id "KAT6A--TAC4^KAT6A^ENSG00000083168.11" ; gene_name KAT6A ; gene_type protein_coding ; havana_gene "OTTHUMG00000150453.6" ; havana_transcript "OTTHUMT00000318160.3" ; hgnc_id "HGNC:13013" ; level 2 ; orig_coord_info "chr8,42048378,42048977,-" ; protein_id "ENSP00000265713.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "KAT6A--TAC4^ENST00000265713.8" ; transcript_name "KAT6A-201" ; transcript_support_level 1 ; transcript_type protein_coding
KAT6A--TAC4 HAVANA mRNA 1008 38830 . + . FI_gene_label "KAT6A^ENSG00000083168.11" ; ID "KAT6A--TAC4^ENST00000265713.8" ; Parent "KAT6A--TAC4^KAT6A^ENSG00000083168.11" ; ccdsid "CCDS6124.1" ; exon_id "ENSE00002107560.1" ; exon_number 2 ; gene_id "KAT6A--TAC4^KAT6A^ENSG00000083168.11" ; gene_name KAT6A ; gene_type protein_coding ; havana_gene "OTTHUMG00000150453.6" ; havana_transcript "OTTHUMT00000318160.3" ; hgnc_id "HGNC:13013" ; level 2 ; orig_coord_info "chr8,42048378,42048977,-" ; protein_id "ENSP00000265713.2" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "KAT6A--TAC4^ENST00000265713.8" ; transcript_name "KAT6A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KAT6A--TAC4 HAVANA gene 41831 46831 . + . FI_gene_label "TAC4^ENSG00000176358.15" ; ID "KAT6A--TAC4^TAC4^ENSG00000176358.15" ; ccdsid "CCDS42360.1" ; exon_id "ENSE00001288342.2" ; exon_number 1 ; gene_id "KAT6A--TAC4^TAC4^ENSG00000176358.15" ; gene_name TAC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161830.2" ; havana_transcript "OTTHUMT00000366201.1" ; hgnc_id "HGNC:16641" ; level 2 ; orig_coord_info "chr17,49847913,49848017,-" ; protein_id "ENSP00000325286.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "KAT6A--TAC4^ENST00000326219.5" ; transcript_name "TAC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KAT6A--TAC4 HAVANA mRNA 41831 46831 . + . FI_gene_label "TAC4^ENSG00000176358.15" ; ID "KAT6A--TAC4^ENST00000326219.5" ; Parent "KAT6A--TAC4^TAC4^ENSG00000176358.15" ; ccdsid "CCDS42360.1" ; exon_id "ENSE00001288342.2" ; exon_number 1 ; gene_id "KAT6A--TAC4^TAC4^ENSG00000176358.15" ; gene_name TAC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000161830.2" ; havana_transcript "OTTHUMT00000366201.1" ; hgnc_id "HGNC:16641" ; level 2 ; orig_coord_info "chr17,49847913,49848017,-" ; protein_id "ENSP00000325286.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "KAT6A--TAC4^ENST00000326219.5" ; transcript_name "TAC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MAN1A2--LINC00535 HAVANA gene 1001 23667 . + . FI_gene_label "MAN1A2^ENSG00000198162.12" ; ID "MAN1A2--LINC00535^MAN1A2^ENSG00000198162.12" ; ccdsid "CCDS895.1" ; exon_id "ENSE00002687723.1" ; exon_number 1 ; gene_id "MAN1A2--LINC00535^MAN1A2^ENSG00000198162.12" ; gene_name MAN1A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012149.2" ; havana_transcript "OTTHUMT00000033593.1" ; hgnc_id "HGNC:6822" ; level 2 ; orig_coord_info "chr1,117368184,117368485,+" ; protein_id "ENSP00000348959.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAN1A2--LINC00535^ENST00000356554.7" ; transcript_name "MAN1A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
MAN1A2--LINC00535 HAVANA mRNA 1001 23667 . + . FI_gene_label "MAN1A2^ENSG00000198162.12" ; ID "MAN1A2--LINC00535^ENST00000356554.7" ; Parent "MAN1A2--LINC00535^MAN1A2^ENSG00000198162.12" ; ccdsid "CCDS895.1" ; exon_id "ENSE00002687723.1" ; exon_number 1 ; gene_id "MAN1A2--LINC00535^MAN1A2^ENSG00000198162.12" ; gene_name MAN1A2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012149.2" ; havana_transcript "OTTHUMT00000033593.1" ; hgnc_id "HGNC:6822" ; level 2 ; orig_coord_info "chr1,117368184,117368485,+" ; protein_id "ENSP00000348959.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MAN1A2--LINC00535^ENST00000356554.7" ; transcript_name "MAN1A2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
POLR3E--LMCD1-AS1 HAVANA gene 1035 24635 . + . FI_gene_label "POLR3E^ENSG00000058600.16" ; ID "POLR3E--LMCD1-AS1^POLR3E^ENSG00000058600.16" ; ccdsid "CCDS10605.1" ; exon_id "ENSE00003533384.1" ; exon_number 2 ; gene_id "POLR3E--LMCD1-AS1^POLR3E^ENSG00000058600.16" ; gene_name POLR3E ; gene_type protein_coding ; havana_gene "OTTHUMG00000094779.4" ; havana_transcript "OTTHUMT00000211590.2" ; hgnc_id "HGNC:30347" ; level 2 ; orig_coord_info "chr16,22302969,22303004,+" ; protein_id "ENSP00000299853.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "POLR3E--LMCD1-AS1^ENST00000299853.10" ; transcript_name "POLR3E-201" ; transcript_support_level 1 ; transcript_type protein_coding
POLR3E--LMCD1-AS1 HAVANA mRNA 1035 24635 . + . FI_gene_label "POLR3E^ENSG00000058600.16" ; ID "POLR3E--LMCD1-AS1^ENST00000299853.10" ; Parent "POLR3E--LMCD1-AS1^POLR3E^ENSG00000058600.16" ; ccdsid "CCDS10605.1" ; exon_id "ENSE00003533384.1" ; exon_number 2 ; gene_id "POLR3E--LMCD1-AS1^POLR3E^ENSG00000058600.16" ; gene_name POLR3E ; gene_type protein_coding ; havana_gene "OTTHUMG00000094779.4" ; havana_transcript "OTTHUMT00000211590.2" ; hgnc_id "HGNC:30347" ; level 2 ; orig_coord_info "chr16,22302969,22303004,+" ; protein_id "ENSP00000299853.5" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "POLR3E--LMCD1-AS1^ENST00000299853.10" ; transcript_name "POLR3E-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PUM2--SLC7A15P HAVANA gene 6028 28883 . + . FI_gene_label "PUM2^ENSG00000055917.16" ; ID "PUM2--SLC7A15P^PUM2^ENSG00000055917.16" ; ccdsid "CCDS1698.1" ; exon_id "ENSE00001183721.4" ; exon_number 1 ; gene_id "PUM2--SLC7A15P^PUM2^ENSG00000055917.16" ; gene_name PUM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000122098.4" ; havana_transcript "OTTHUMT00000242862.1" ; hgnc_id "HGNC:14958" ; level 2 ; orig_coord_info "chr2,20327310,20327360,-" ; protein_id "ENSP00000338173.5" ; tag basic appris_principal_1 CCDS ; transcript_id "PUM2--SLC7A15P^ENST00000338086.9" ; transcript_name "PUM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PUM2--SLC7A15P HAVANA mRNA 6028 28883 . + . FI_gene_label "PUM2^ENSG00000055917.16" ; ID "PUM2--SLC7A15P^ENST00000338086.9" ; Parent "PUM2--SLC7A15P^PUM2^ENSG00000055917.16" ; ccdsid "CCDS1698.1" ; exon_id "ENSE00001183721.4" ; exon_number 1 ; gene_id "PUM2--SLC7A15P^PUM2^ENSG00000055917.16" ; gene_name PUM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000122098.4" ; havana_transcript "OTTHUMT00000242862.1" ; hgnc_id "HGNC:14958" ; level 2 ; orig_coord_info "chr2,20327310,20327360,-" ; protein_id "ENSP00000338173.5" ; tag basic appris_principal_1 CCDS ; transcript_id "PUM2--SLC7A15P^ENST00000338086.9" ; transcript_name "PUM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF43--IFNGR2 HAVANA gene 17481 26296 . + . FI_gene_label "IFNGR2^ENSG00000159128.15" ; ID "RNF43--IFNGR2^IFNGR2^ENSG00000159128.15" ; ccdsid "CCDS33544.1" ; exon_id "ENSE00001338849.3" ; exon_number 1 ; gene_id "RNF43--IFNGR2^IFNGR2^ENSG00000159128.15" ; gene_name IFNGR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000065188.5" ; havana_transcript "OTTHUMT00000139916.1" ; hgnc_id "HGNC:5440" ; level 2 ; orig_coord_info "chr21,33403544,33403616,+" ; protein_id "ENSP00000290219.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF43--IFNGR2^ENST00000290219.11" ; transcript_name "IFNGR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF43--IFNGR2 HAVANA mRNA 17481 26296 . + . FI_gene_label "IFNGR2^ENSG00000159128.15" ; ID "RNF43--IFNGR2^ENST00000290219.11" ; Parent "RNF43--IFNGR2^IFNGR2^ENSG00000159128.15" ; ccdsid "CCDS33544.1" ; exon_id "ENSE00001338849.3" ; exon_number 1 ; gene_id "RNF43--IFNGR2^IFNGR2^ENSG00000159128.15" ; gene_name IFNGR2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000065188.5" ; havana_transcript "OTTHUMT00000139916.1" ; hgnc_id "HGNC:5440" ; level 2 ; orig_coord_info "chr21,33403544,33403616,+" ; protein_id "ENSP00000290219.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF43--IFNGR2^ENST00000290219.11" ; transcript_name "IFNGR2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF43--IFNGR2 HAVANA gene 1062 14480 . + . FI_gene_label "RNF43^ENSG00000108375.13" ; ID "RNF43--IFNGR2^RNF43^ENSG00000108375.13" ; ccdsid "CCDS11607.1" ; exon_id "ENSE00001553129.1" ; exon_number 2 ; gene_id "RNF43--IFNGR2^RNF43^ENSG00000108375.13" ; gene_name RNF43 ; gene_type protein_coding ; havana_gene "OTTHUMG00000193347.1" ; havana_transcript "OTTHUMT00000444711.1" ; hgnc_id "HGNC:18505" ; level 2 ; orig_coord_info "chr17,58415326,58415577,-" ; protein_id "ENSP00000385328.2" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF43--IFNGR2^ENST00000407977.7" ; transcript_name "RNF43-201" ; transcript_support_level 2 ; transcript_type protein_coding
RNF43--IFNGR2 HAVANA mRNA 1062 14480 . + . FI_gene_label "RNF43^ENSG00000108375.13" ; ID "RNF43--IFNGR2^ENST00000407977.7" ; Parent "RNF43--IFNGR2^RNF43^ENSG00000108375.13" ; ccdsid "CCDS11607.1" ; exon_id "ENSE00001553129.1" ; exon_number 2 ; gene_id "RNF43--IFNGR2^RNF43^ENSG00000108375.13" ; gene_name RNF43 ; gene_type protein_coding ; havana_gene "OTTHUMG00000193347.1" ; havana_transcript "OTTHUMT00000444711.1" ; hgnc_id "HGNC:18505" ; level 2 ; orig_coord_info "chr17,58415326,58415577,-" ; protein_id "ENSP00000385328.2" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF43--IFNGR2^ENST00000407977.7" ; transcript_name "RNF43-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--FAM157A HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--FAM157A HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--FAM157A^ENST00000326270.13" ; Parent "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--FAM157A^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--FAM157A^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMEM50B--TSPOAP1-AS1 HAVANA gene 1032 16829 . + . FI_gene_label "TMEM50B^ENSG00000142188.17" ; ID "TMEM50B--TSPOAP1-AS1^TMEM50B^ENSG00000142188.17" ; ccdsid "CCDS13625.1" ; exon_id "ENSE00002433737.1" ; exon_number 2 ; gene_id "TMEM50B--TSPOAP1-AS1^TMEM50B^ENSG00000142188.17" ; gene_name TMEM50B ; gene_type protein_coding ; havana_gene "OTTHUMG00000065286.13" ; havana_transcript "OTTHUMT00000140079.4" ; hgnc_id "HGNC:1280" ; level 2 ; orig_coord_info "chr21,33468787,33468885,-" ; protein_id "ENSP00000397773.1" ; tag CCDS ; transcript_id "TMEM50B--TSPOAP1-AS1^ENST00000420455.5" ; transcript_name "TMEM50B-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
TMEM50B--TSPOAP1-AS1 HAVANA mRNA 1032 16829 . + . FI_gene_label "TMEM50B^ENSG00000142188.17" ; ID "TMEM50B--TSPOAP1-AS1^ENST00000420455.5" ; Parent "TMEM50B--TSPOAP1-AS1^TMEM50B^ENSG00000142188.17" ; ccdsid "CCDS13625.1" ; exon_id "ENSE00002433737.1" ; exon_number 2 ; gene_id "TMEM50B--TSPOAP1-AS1^TMEM50B^ENSG00000142188.17" ; gene_name TMEM50B ; gene_type protein_coding ; havana_gene "OTTHUMG00000065286.13" ; havana_transcript "OTTHUMT00000140079.4" ; hgnc_id "HGNC:1280" ; level 2 ; orig_coord_info "chr21,33468787,33468885,-" ; protein_id "ENSP00000397773.1" ; tag CCDS ; transcript_id "TMEM50B--TSPOAP1-AS1^ENST00000420455.5" ; transcript_name "TMEM50B-201" ; transcript_support_level 1 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
TMPRSS2--ERG HAVANA gene 30939 50248 . + . FI_gene_label "ERG^ENSG00000157554.19" ; ID "TMPRSS2--ERG^ERG^ENSG00000157554.19" ; ccdsid "CCDS13658.1" ; exon_id "ENSE00001931764.2" ; exon_number 1 ; gene_id "TMPRSS2--ERG^ERG^ENSG00000157554.19" ; gene_name ERG ; gene_type protein_coding ; havana_gene "OTTHUMG00000090767.4" ; havana_transcript "OTTHUMT00000207531.2" ; hgnc_id "HGNC:3446" ; level 2 ; orig_coord_info "chr21,38498363,38498380,-" ; protein_id "ENSP00000288319.7" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMPRSS2--ERG^ENST00000288319.12" ; transcript_name "ERG-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMPRSS2--ERG HAVANA mRNA 30939 50248 . + . FI_gene_label "ERG^ENSG00000157554.19" ; ID "TMPRSS2--ERG^ENST00000288319.12" ; Parent "TMPRSS2--ERG^ERG^ENSG00000157554.19" ; ccdsid "CCDS13658.1" ; exon_id "ENSE00001931764.2" ; exon_number 1 ; gene_id "TMPRSS2--ERG^ERG^ENSG00000157554.19" ; gene_name ERG ; gene_type protein_coding ; havana_gene "OTTHUMG00000090767.4" ; havana_transcript "OTTHUMT00000207531.2" ; hgnc_id "HGNC:3446" ; level 2 ; orig_coord_info "chr21,38498363,38498380,-" ; protein_id "ENSP00000288319.7" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMPRSS2--ERG^ENST00000288319.12" ; transcript_name "ERG-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMPRSS2--ERG HAVANA gene 4575 23486 . + . FI_gene_label "TMPRSS2^ENSG00000184012.14" ; ID "TMPRSS2--ERG^TMPRSS2^ENSG00000184012.14" ; ccdsid "CCDS33564.1" ; exon_id "ENSE00003502036.1" ; exon_number 2 ; gene_id "TMPRSS2--ERG^TMPRSS2^ENSG00000184012.14" ; gene_name TMPRSS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086762.7" ; havana_transcript "OTTHUMT00000195189.2" ; hgnc_id "HGNC:11876" ; level 2 ; orig_coord_info "chr21,41498119,41498133,-" ; protein_id "ENSP00000330330.5" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "TMPRSS2--ERG^ENST00000332149.10" ; transcript_name "TMPRSS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMPRSS2--ERG HAVANA mRNA 4575 23486 . + . FI_gene_label "TMPRSS2^ENSG00000184012.14" ; ID "TMPRSS2--ERG^ENST00000332149.10" ; Parent "TMPRSS2--ERG^TMPRSS2^ENSG00000184012.14" ; ccdsid "CCDS33564.1" ; exon_id "ENSE00003502036.1" ; exon_number 2 ; gene_id "TMPRSS2--ERG^TMPRSS2^ENSG00000184012.14" ; gene_name TMPRSS2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000086762.7" ; havana_transcript "OTTHUMT00000195189.2" ; hgnc_id "HGNC:11876" ; level 2 ; orig_coord_info "chr21,41498119,41498133,-" ; protein_id "ENSP00000330330.5" ; tag CAGE_supported_TSS basic MANE_Select appris_principal_2 CCDS ; transcript_id "TMPRSS2--ERG^ENST00000332149.10" ; transcript_name "TMPRSS2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC138409.2--NAIP HAVANA gene 4397 11022 . + . FI_gene_label "AC138409.2^ENSG00000215158.9" ; ID "AC138409.2--NAIP^AC138409.2^ENSG00000215158.9" ; exon_id "ENSE00002080508.1" ; exon_number 1 ; gene_id "AC138409.2--NAIP^AC138409.2^ENSG00000215158.9" ; gene_name "AC138409.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000162181.1" ; havana_transcript "OTTHUMT00000367774.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr5,34218295,34218343,-" ; tag basic ; transcript_id "AC138409.2--NAIP^ENST00000507274.1" ; transcript_name "AC138409.2-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
AC138409.2--NAIP HAVANA RNA 4397 11022 . + . FI_gene_label "AC138409.2^ENSG00000215158.9" ; ID "AC138409.2--NAIP^ENST00000507274.1" ; Parent "AC138409.2--NAIP^AC138409.2^ENSG00000215158.9" ; exon_id "ENSE00002080508.1" ; exon_number 1 ; gene_id "AC138409.2--NAIP^AC138409.2^ENSG00000215158.9" ; gene_name "AC138409.2" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000162181.1" ; havana_transcript "OTTHUMT00000367774.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr5,34218295,34218343,-" ; tag basic ; transcript_id "AC138409.2--NAIP^ENST00000507274.1" ; transcript_name "AC138409.2-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AGPAT5--AL357055.2 HAVANA gene 19555 19988 . + . FI_gene_label "AL357055.2^ENSG00000236887.1" ; ID "AGPAT5--AL357055.2^AL357055.2^ENSG00000236887.1" ; exon_id "ENSE00001601740.1" ; exon_number 1 ; gene_id "AGPAT5--AL357055.2^AL357055.2^ENSG00000236887.1" ; gene_name "AL357055.2" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000012185.1" ; havana_transcript "OTTHUMT00000033695.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr1,113198825,113199258,+" ; tag pseudo_consens basic ; transcript_id "AGPAT5--AL357055.2^ENST00000412567.1" ; transcript_name "AL357055.2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
AGPAT5--AL357055.2 HAVANA RNA 19555 19988 . + . FI_gene_label "AL357055.2^ENSG00000236887.1" ; ID "AGPAT5--AL357055.2^ENST00000412567.1" ; Parent "AGPAT5--AL357055.2^AL357055.2^ENSG00000236887.1" ; exon_id "ENSE00001601740.1" ; exon_number 1 ; gene_id "AGPAT5--AL357055.2^AL357055.2^ENSG00000236887.1" ; gene_name "AL357055.2" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000012185.1" ; havana_transcript "OTTHUMT00000033695.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr1,113198825,113199258,+" ; tag pseudo_consens basic ; transcript_id "AGPAT5--AL357055.2^ENST00000412567.1" ; transcript_name "AL357055.2-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
AL353637.1--PRUNE2 HAVANA gene 1001 2010 . + . FI_gene_label "AL353637.1^ENSG00000229857.1" ; ID "AL353637.1--PRUNE2^AL353637.1^ENSG00000229857.1" ; exon_id "ENSE00001741105.1" ; exon_number 1 ; gene_id "AL353637.1--PRUNE2^AL353637.1^ENSG00000229857.1" ; gene_name "AL353637.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000020050.1" ; havana_transcript "OTTHUMT00000052744.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr9,76992099,76992517,+" ; tag pseudo_consens basic ; transcript_id "AL353637.1--PRUNE2^ENST00000451571.1" ; transcript_name "AL353637.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
AL353637.1--PRUNE2 HAVANA RNA 1001 2010 . + . FI_gene_label "AL353637.1^ENSG00000229857.1" ; ID "AL353637.1--PRUNE2^ENST00000451571.1" ; Parent "AL353637.1--PRUNE2^AL353637.1^ENSG00000229857.1" ; exon_id "ENSE00001741105.1" ; exon_number 1 ; gene_id "AL353637.1--PRUNE2^AL353637.1^ENSG00000229857.1" ; gene_name "AL353637.1" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000020050.1" ; havana_transcript "OTTHUMT00000052744.1" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr9,76992099,76992517,+" ; tag pseudo_consens basic ; transcript_id "AL353637.1--PRUNE2^ENST00000451571.1" ; transcript_name "AL353637.1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
AL353637.2--PRUNE2 HAVANA gene 1001 5138 . + . FI_gene_label "AL353637.2^ENSG00000286332.1" ; ID "AL353637.2--PRUNE2^AL353637.2^ENSG00000286332.1" ; exon_id "ENSE00003877962.1" ; exon_number 1 ; gene_id "AL353637.2--PRUNE2^AL353637.2^ENSG00000286332.1" ; gene_name "AL353637.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195033.1" ; havana_transcript "OTTHUMT00000523867.1" ; level 2 ; orig_coord_info "chr9,76919700,76919785,-" ; tag basic TAGENE ; transcript_id "AL353637.2--PRUNE2^ENST00000667357.1" ; transcript_name "AL353637.2-201" ; transcript_type lncRNA
AL353637.2--PRUNE2 HAVANA RNA 1001 5138 . + . FI_gene_label "AL353637.2^ENSG00000286332.1" ; ID "AL353637.2--PRUNE2^ENST00000667357.1" ; Parent "AL353637.2--PRUNE2^AL353637.2^ENSG00000286332.1" ; exon_id "ENSE00003877962.1" ; exon_number 1 ; gene_id "AL353637.2--PRUNE2^AL353637.2^ENSG00000286332.1" ; gene_name "AL353637.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195033.1" ; havana_transcript "OTTHUMT00000523867.1" ; level 2 ; orig_coord_info "chr9,76919700,76919785,-" ; tag basic TAGENE ; transcript_id "AL353637.2--PRUNE2^ENST00000667357.1" ; transcript_name "AL353637.2-201" ; transcript_type lncRNA
L1 and L2 created:
AL512590.2--CCDC180 HAVANA gene 1001 11243 . + . FI_gene_label "AL512590.2^ENSG00000254633.2" ; ID "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; exon_id "ENSE00002146032.2" ; exon_number 1 ; gene_id "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; gene_name "AL512590.2" ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000167000.2" ; havana_transcript "OTTHUMT00000392365.2" ; level 2 ; orig_coord_info "chr9,97276569,97276697,+" ; tag basic ; transcript_id "AL512590.2--CCDC180^ENST00000531758.2" ; transcript_name "AL512590.2-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
AL512590.2--CCDC180 HAVANA RNA 1001 11243 . + . FI_gene_label "AL512590.2^ENSG00000254633.2" ; ID "AL512590.2--CCDC180^ENST00000531758.2" ; Parent "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; exon_id "ENSE00002146032.2" ; exon_number 1 ; gene_id "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; gene_name "AL512590.2" ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000167000.2" ; havana_transcript "OTTHUMT00000392365.2" ; level 2 ; orig_coord_info "chr9,97276569,97276697,+" ; tag basic ; transcript_id "AL512590.2--CCDC180^ENST00000531758.2" ; transcript_name "AL512590.2-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
L1 and L2 created:
DDX42--AC005670.3 HAVANA gene 30398 52417 . + . FI_gene_label "AC005670.3^ENSG00000262879.6" ; ID "DDX42--AC005670.3^AC005670.3^ENSG00000262879.6" ; exon_id "ENSE00003857049.1" ; exon_number 1 ; gene_id "DDX42--AC005670.3^AC005670.3^ENSG00000262879.6" ; gene_name "AC005670.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000178188.23" ; havana_transcript "OTTHUMT00000440922.2" ; level 2 ; orig_coord_info "chr17,47067414,47067513,-" ; tag TAGENE ; transcript_id "DDX42--AC005670.3^ENST00000570314.2" ; transcript_name "AC005670.3-210" ; transcript_support_level 3 ; transcript_type lncRNA
DDX42--AC005670.3 HAVANA RNA 30398 52417 . + . FI_gene_label "AC005670.3^ENSG00000262879.6" ; ID "DDX42--AC005670.3^ENST00000570314.2" ; Parent "DDX42--AC005670.3^AC005670.3^ENSG00000262879.6" ; exon_id "ENSE00003857049.1" ; exon_number 1 ; gene_id "DDX42--AC005670.3^AC005670.3^ENSG00000262879.6" ; gene_name "AC005670.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000178188.23" ; havana_transcript "OTTHUMT00000440922.2" ; level 2 ; orig_coord_info "chr17,47067414,47067513,-" ; tag TAGENE ; transcript_id "DDX42--AC005670.3^ENST00000570314.2" ; transcript_name "AC005670.3-210" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
DDX42--LRRC37A17P HAVANA gene 26631 38702 . + . FI_gene_label "LRRC37A17P^ENSG00000263142.5" ; ID "DDX42--LRRC37A17P^LRRC37A17P^ENSG00000263142.5" ; exon_id "ENSE00002640160.1" ; exon_number 1 ; gene_id "DDX42--LRRC37A17P^LRRC37A17P^ENSG00000263142.5" ; gene_name LRRC37A17P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000178082.1" ; havana_transcript "OTTHUMT00000440449.1" ; hgnc_id "HGNC:48365" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,47017193,47019800,+" ; tag basic ; transcript_id "DDX42--LRRC37A17P^ENST00000570311.1" ; transcript_name "LRRC37A17P-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
DDX42--LRRC37A17P HAVANA RNA 26631 38702 . + . FI_gene_label "LRRC37A17P^ENSG00000263142.5" ; ID "DDX42--LRRC37A17P^ENST00000570311.1" ; Parent "DDX42--LRRC37A17P^LRRC37A17P^ENSG00000263142.5" ; exon_id "ENSE00002640160.1" ; exon_number 1 ; gene_id "DDX42--LRRC37A17P^LRRC37A17P^ENSG00000263142.5" ; gene_name LRRC37A17P ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000178082.1" ; havana_transcript "OTTHUMT00000440449.1" ; hgnc_id "HGNC:48365" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,47017193,47019800,+" ; tag basic ; transcript_id "DDX42--LRRC37A17P^ENST00000570311.1" ; transcript_name "LRRC37A17P-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
FBXO25--AC240565.1 HAVANA gene 26102 34357 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "FBXO25--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
FBXO25--AC240565.1 HAVANA RNA 26102 34357 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "FBXO25--AC240565.1^ENST00000624936.2" ; Parent "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "FBXO25--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
MAN1A2--LINC00535 HAVANA gene 26668 38795 . + . FI_gene_label "LINC00535^ENSG00000246662.6" ; ID "MAN1A2--LINC00535^LINC00535^ENSG00000246662.6" ; exon_id "ENSE00001964268.1" ; exon_number 1 ; gene_id "MAN1A2--LINC00535^LINC00535^ENSG00000246662.6" ; gene_name LINC00535 ; gene_type lncRNA ; havana_gene "OTTHUMG00000164234.1" ; havana_transcript "OTTHUMT00000377885.1" ; hgnc_id "HGNC:43644" ; level 2 ; orig_coord_info "chr8,93699936,93700433,-" ; tag basic ; transcript_id "MAN1A2--LINC00535^ENST00000501400.1" ; transcript_name "LINC00535-201" ; transcript_support_level 1 ; transcript_type lncRNA
MAN1A2--LINC00535 HAVANA RNA 26668 38795 . + . FI_gene_label "LINC00535^ENSG00000246662.6" ; ID "MAN1A2--LINC00535^ENST00000501400.1" ; Parent "MAN1A2--LINC00535^LINC00535^ENSG00000246662.6" ; exon_id "ENSE00001964268.1" ; exon_number 1 ; gene_id "MAN1A2--LINC00535^LINC00535^ENSG00000246662.6" ; gene_name LINC00535 ; gene_type lncRNA ; havana_gene "OTTHUMG00000164234.1" ; havana_transcript "OTTHUMT00000377885.1" ; hgnc_id "HGNC:43644" ; level 2 ; orig_coord_info "chr8,93699936,93700433,-" ; tag basic ; transcript_id "MAN1A2--LINC00535^ENST00000501400.1" ; transcript_name "LINC00535-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
POLR3E--LMCD1-AS1 HAVANA gene 31738 39087 . + . FI_gene_label "LMCD1-AS1^ENSG00000227110.7" ; ID "POLR3E--LMCD1-AS1^LMCD1-AS1^ENSG00000227110.7" ; exon_id "ENSE00003887052.1" ; exon_number 1 ; gene_id "POLR3E--LMCD1-AS1^LMCD1-AS1^ENSG00000227110.7" ; gene_name "LMCD1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154968.2" ; havana_transcript "OTTHUMT00000337845.2" ; hgnc_id "HGNC:44477" ; level 2 ; orig_coord_info "chr3,8501471,8501668,-" ; tag basic TAGENE ; transcript_id "POLR3E--LMCD1-AS1^ENST00000420095.2" ; transcript_name "LMCD1-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
POLR3E--LMCD1-AS1 HAVANA RNA 31738 39087 . + . FI_gene_label "LMCD1-AS1^ENSG00000227110.7" ; ID "POLR3E--LMCD1-AS1^ENST00000420095.2" ; Parent "POLR3E--LMCD1-AS1^LMCD1-AS1^ENSG00000227110.7" ; exon_id "ENSE00003887052.1" ; exon_number 1 ; gene_id "POLR3E--LMCD1-AS1^LMCD1-AS1^ENSG00000227110.7" ; gene_name "LMCD1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154968.2" ; havana_transcript "OTTHUMT00000337845.2" ; hgnc_id "HGNC:44477" ; level 2 ; orig_coord_info "chr3,8501471,8501668,-" ; tag basic TAGENE ; transcript_id "POLR3E--LMCD1-AS1^ENST00000420095.2" ; transcript_name "LMCD1-AS1-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
PUM2--SLC7A15P HAVANA gene 31884 36740 . + . FI_gene_label "SLC7A15P^ENSG00000232800.1" ; ID "PUM2--SLC7A15P^SLC7A15P^ENSG00000232800.1" ; exon_id "ENSE00001688134.1" ; exon_number 1 ; gene_id "PUM2--SLC7A15P^SLC7A15P^ENSG00000232800.1" ; gene_name SLC7A15P ; gene_type unitary_pseudogene ; havana_gene "OTTHUMG00000154621.1" ; havana_transcript "OTTHUMT00000336349.1" ; hgnc_id "HGNC:32724" ; level 1 ; ont "PGO:0000006" ; orig_coord_info "chr2,20386386,20387090,+" ; tag pseudo_consens basic ; transcript_id "PUM2--SLC7A15P^ENST00000424028.1" ; transcript_name "SLC7A15P-201" ; transcript_support_level NA ; transcript_type unitary_pseudogene
PUM2--SLC7A15P HAVANA RNA 31884 36740 . + . FI_gene_label "SLC7A15P^ENSG00000232800.1" ; ID "PUM2--SLC7A15P^ENST00000424028.1" ; Parent "PUM2--SLC7A15P^SLC7A15P^ENSG00000232800.1" ; exon_id "ENSE00001688134.1" ; exon_number 1 ; gene_id "PUM2--SLC7A15P^SLC7A15P^ENSG00000232800.1" ; gene_name SLC7A15P ; gene_type unitary_pseudogene ; havana_gene "OTTHUMG00000154621.1" ; havana_transcript "OTTHUMT00000336349.1" ; hgnc_id "HGNC:32724" ; level 1 ; ont "PGO:0000006" ; orig_coord_info "chr2,20386386,20387090,+" ; tag pseudo_consens basic ; transcript_id "PUM2--SLC7A15P^ENST00000424028.1" ; transcript_name "SLC7A15P-201" ; transcript_support_level NA ; transcript_type unitary_pseudogene
L1 and L2 created:
TLK2--FAM157A HAVANA gene 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
TLK2--FAM157A HAVANA RNA 40046 44186 . + . FI_gene_label "FAM157A^ENSG00000236438.7" ; ID "TLK2--FAM157A^ENST00000437428.3" ; Parent "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; exon_id "ENSE00002579345.3" ; exon_number 1 ; gene_id "TLK2--FAM157A^FAM157A^ENSG00000236438.7" ; gene_name FAM157A ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000187506.3" ; havana_transcript "OTTHUMT00000488453.1" ; hgnc_id "HGNC:34079" ; level 2 ; orig_coord_info "chr3,198153287,198153409,+" ; tag basic ; transcript_id "TLK2--FAM157A^ENST00000437428.3" ; transcript_name "FAM157A-201" ; transcript_support_level 3 ; transcript_type processed_transcript
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
TMEM50B--TSPOAP1-AS1 HAVANA gene 25022 30740 . + . FI_gene_label "TSPOAP1-AS1^ENSG00000265148.6" ; ID "TMEM50B--TSPOAP1-AS1^TSPOAP1-AS1^ENSG00000265148.6" ; exon_id "ENSE00002698474.1" ; exon_number 1 ; gene_id "TMEM50B--TSPOAP1-AS1^TSPOAP1-AS1^ENSG00000265148.6" ; gene_name "TSPOAP1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000178924.2" ; havana_transcript "OTTHUMT00000443992.1" ; hgnc_id "HGNC:44148" ; level 2 ; orig_coord_info "chr17,58337215,58337310,+" ; transcript_id "TMEM50B--TSPOAP1-AS1^ENST00000578025.5" ; transcript_name "TSPOAP1-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
TMEM50B--TSPOAP1-AS1 HAVANA RNA 25022 30740 . + . FI_gene_label "TSPOAP1-AS1^ENSG00000265148.6" ; ID "TMEM50B--TSPOAP1-AS1^ENST00000578025.5" ; Parent "TMEM50B--TSPOAP1-AS1^TSPOAP1-AS1^ENSG00000265148.6" ; exon_id "ENSE00002698474.1" ; exon_number 1 ; gene_id "TMEM50B--TSPOAP1-AS1^TSPOAP1-AS1^ENSG00000265148.6" ; gene_name "TSPOAP1-AS1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000178924.2" ; havana_transcript "OTTHUMT00000443992.1" ; hgnc_id "HGNC:44148" ; level 2 ; orig_coord_info "chr17,58337215,58337310,+" ; transcript_id "TMEM50B--TSPOAP1-AS1^ENST00000578025.5" ; transcript_name "TSPOAP1-AS1-201" ; transcript_support_level 1 ; transcript_type lncRNA
591 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1075 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 46 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 0 second) ------
GFF3 file parsed