Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bQZ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bQZ-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bQZ-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:40:01.059 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:40:01 GMT 2026] MarkDuplicates --INPUT 659_bQZ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bQZ-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bQZ-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:40:01 GMT 2026] Executing as ?@nf-f0c69779d10a7c55a6db7f981583392e-72733-pj72t on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:40:01 MarkDuplicates Start of doWork freeMemory: 105491640; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:40:01 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:40:01 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:40:06 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:03s. Time for last 1,000,000: 3s. Last read position: chr1:1,341,966
INFO 2026-06-08 08:40:06 MarkDuplicates Tracking 2645 as yet unmatched pairs. 435 records in RAM.
INFO 2026-06-08 08:40:08 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:05s. Time for last 1,000,000: 1s. Last read position: chr1:2,303,379
INFO 2026-06-08 08:40:08 MarkDuplicates Tracking 4726 as yet unmatched pairs. 454 records in RAM.
INFO 2026-06-08 08:40:10 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:6,595,474
INFO 2026-06-08 08:40:10 MarkDuplicates Tracking 6844 as yet unmatched pairs. 313 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 2s. Last read position: chr1:9,773,266
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 8795 as yet unmatched pairs. 360 records in RAM.
INFO 2026-06-08 08:40:14 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:12s. Time for last 1,000,000: 2s. Last read position: chr1:11,974,754
INFO 2026-06-08 08:40:14 MarkDuplicates Tracking 10587 as yet unmatched pairs. 175 records in RAM.
INFO 2026-06-08 08:40:16 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:14s. Time for last 1,000,000: 1s. Last read position: chr1:16,125,191
INFO 2026-06-08 08:40:16 MarkDuplicates Tracking 12709 as yet unmatched pairs. 368 records in RAM.
INFO 2026-06-08 08:40:19 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 2s. Last read position: chr1:19,115,534
INFO 2026-06-08 08:40:19 MarkDuplicates Tracking 14801 as yet unmatched pairs. 602 records in RAM.
INFO 2026-06-08 08:40:21 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:19s. Time for last 1,000,000: 2s. Last read position: chr1:20,854,993
INFO 2026-06-08 08:40:21 MarkDuplicates Tracking 16221 as yet unmatched pairs. 64 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:21,852,713
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 19034 as yet unmatched pairs. 836 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:24s. Time for last 1,000,000: 2s. Last read position: chr1:23,068,653
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 20523 as yet unmatched pairs. 298 records in RAM.
INFO 2026-06-08 08:40:29 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 2s. Last read position: chr1:25,805,173
INFO 2026-06-08 08:40:29 MarkDuplicates Tracking 22424 as yet unmatched pairs. 424 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:27,102,672
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 24185 as yet unmatched pairs. 184 records in RAM.
INFO 2026-06-08 08:40:33 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 1s. Last read position: chr1:29,260,673
INFO 2026-06-08 08:40:33 MarkDuplicates Tracking 25975 as yet unmatched pairs. 84 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:32s. Time for last 1,000,000: 1s. Last read position: chr1:32,076,772
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 28223 as yet unmatched pairs. 190 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:33,092,118
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 30153 as yet unmatched pairs. 57 records in RAM.
INFO 2026-06-08 08:40:38 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:36,322,322
INFO 2026-06-08 08:40:38 MarkDuplicates Tracking 32435 as yet unmatched pairs. 424 records in RAM.
INFO 2026-06-08 08:40:41 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:39,462,006
INFO 2026-06-08 08:40:41 MarkDuplicates Tracking 34080 as yet unmatched pairs. 195 records in RAM.
INFO 2026-06-08 08:40:43 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:42,767,321
INFO 2026-06-08 08:40:43 MarkDuplicates Tracking 35797 as yet unmatched pairs. 91 records in RAM.
INFO 2026-06-08 08:40:45 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 2s. Last read position: chr1:44,650,718
INFO 2026-06-08 08:40:45 MarkDuplicates Tracking 38353 as yet unmatched pairs. 617 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 2s. Last read position: chr1:46,272,470
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 39658 as yet unmatched pairs. 108 records in RAM.
INFO 2026-06-08 08:40:48 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 1s. Last read position: chr1:53,038,920
INFO 2026-06-08 08:40:48 MarkDuplicates Tracking 42054 as yet unmatched pairs. 558 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:48s. Time for last 1,000,000: 1s. Last read position: chr1:61,724,967
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 43564 as yet unmatched pairs. 174 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 2s. Last read position: chr1:77,964,309
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 45589 as yet unmatched pairs. 421 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 1s. Last read position: chr1:92,736,560
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 47091 as yet unmatched pairs. 147 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 1s. Last read position: chr1:103,074,721
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 49108 as yet unmatched pairs. 503 records in RAM.
INFO 2026-06-08 08:40:58 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:112,674,725
INFO 2026-06-08 08:40:58 MarkDuplicates Tracking 50512 as yet unmatched pairs. 110 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:116,388,722
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 54871 as yet unmatched pairs. 2547 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:119,915,594
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 55643 as yet unmatched pairs. 1481 records in RAM.
INFO 2026-06-08 08:41:02 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:120,913,422
INFO 2026-06-08 08:41:02 MarkDuplicates Tracking 55723 as yet unmatched pairs. 33 records in RAM.
INFO 2026-06-08 08:41:04 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:01s. Time for last 1,000,000: 1s. Last read position: chr1:147,624,075
INFO 2026-06-08 08:41:04 MarkDuplicates Tracking 57037 as yet unmatched pairs. 291 records in RAM.
INFO 2026-06-08 08:41:06 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 1s. Last read position: chr1:149,813,451
INFO 2026-06-08 08:41:06 MarkDuplicates Tracking 58947 as yet unmatched pairs. 1268 records in RAM.
INFO 2026-06-08 08:41:07 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr1:149,971,179
INFO 2026-06-08 08:41:07 MarkDuplicates Tracking 59047 as yet unmatched pairs. 92 records in RAM.
INFO 2026-06-08 08:41:09 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 1s. Last read position: chr1:151,055,019
INFO 2026-06-08 08:41:09 MarkDuplicates Tracking 61538 as yet unmatched pairs. 576 records in RAM.
INFO 2026-06-08 08:41:10 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 1s. Last read position: chr1:153,638,335
INFO 2026-06-08 08:41:10 MarkDuplicates Tracking 63278 as yet unmatched pairs. 515 records in RAM.
INFO 2026-06-08 08:41:12 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr1:154,172,972
INFO 2026-06-08 08:41:12 MarkDuplicates Tracking 69934 as yet unmatched pairs. 5217 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 1s. Last read position: chr1:155,016,417
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 67162 as yet unmatched pairs. 603 records in RAM.
INFO 2026-06-08 08:41:15 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr1:155,192,143
INFO 2026-06-08 08:41:15 MarkDuplicates Tracking 72708 as yet unmatched pairs. 4614 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 1s. Last read position: chr1:155,963,021
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 70232 as yet unmatched pairs. 410 records in RAM.
INFO 2026-06-08 08:41:18 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr1:156,137,671
INFO 2026-06-08 08:41:18 MarkDuplicates Tracking 77331 as yet unmatched pairs. 5490 records in RAM.
INFO 2026-06-08 08:41:20 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 1s. Last read position: chr1:157,544,407
INFO 2026-06-08 08:41:20 MarkDuplicates Tracking 73915 as yet unmatched pairs. 51 records in RAM.
INFO 2026-06-08 08:41:22 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 2s. Last read position: chr1:161,194,119
INFO 2026-06-08 08:41:22 MarkDuplicates Tracking 76144 as yet unmatched pairs. 413 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr1:167,376,089
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 77529 as yet unmatched pairs. 145 records in RAM.
INFO 2026-06-08 08:41:25 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr1:171,557,408
INFO 2026-06-08 08:41:25 MarkDuplicates Tracking 80596 as yet unmatched pairs. 1369 records in RAM.
INFO 2026-06-08 08:41:27 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr1:180,196,465
INFO 2026-06-08 08:41:27 MarkDuplicates Tracking 81995 as yet unmatched pairs. 916 records in RAM.
INFO 2026-06-08 08:41:29 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 1s. Last read position: chr1:185,307,523
INFO 2026-06-08 08:41:29 MarkDuplicates Tracking 83535 as yet unmatched pairs. 593 records in RAM.
INFO 2026-06-08 08:41:30 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr1:200,853,355
INFO 2026-06-08 08:41:30 MarkDuplicates Tracking 84718 as yet unmatched pairs. 67 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:29s. Time for last 1,000,000: 2s. Last read position: chr1:202,495,291
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 86639 as yet unmatched pairs. 109 records in RAM.
INFO 2026-06-08 08:41:34 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 1s. Last read position: chr1:204,469,367
INFO 2026-06-08 08:41:34 MarkDuplicates Tracking 88761 as yet unmatched pairs. 342 records in RAM.
INFO 2026-06-08 08:41:36 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr1:207,321,766
INFO 2026-06-08 08:41:36 MarkDuplicates Tracking 91573 as yet unmatched pairs. 1293 records in RAM.
INFO 2026-06-08 08:41:38 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:213,242,144
INFO 2026-06-08 08:41:38 MarkDuplicates Tracking 92207 as yet unmatched pairs. 57 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 1s. Last read position: chr1:224,308,122
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 94071 as yet unmatched pairs. 170 records in RAM.
INFO 2026-06-08 08:41:41 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:228,145,542
INFO 2026-06-08 08:41:41 MarkDuplicates Tracking 99418 as yet unmatched pairs. 3730 records in RAM.
INFO 2026-06-08 08:41:43 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr1:234,356,922
INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 97839 as yet unmatched pairs. 20 records in RAM.
INFO 2026-06-08 08:41:45 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 1s. Last read position: chr1:244,855,021
INFO 2026-06-08 08:41:45 MarkDuplicates Tracking 101644 as yet unmatched pairs. 1826 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 3s. Last read position: chr2:3,575,593
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 105182 as yet unmatched pairs. 104634 records in RAM.
INFO 2026-06-08 08:41:50 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 1s. Last read position: chr2:12,718,437
INFO 2026-06-08 08:41:50 MarkDuplicates Tracking 103887 as yet unmatched pairs. 103325 records in RAM.
INFO 2026-06-08 08:41:52 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 2s. Last read position: chr2:24,820,814
INFO 2026-06-08 08:41:52 MarkDuplicates Tracking 105571 as yet unmatched pairs. 105005 records in RAM.
INFO 2026-06-08 08:41:54 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 1s. Last read position: chr2:27,322,383
INFO 2026-06-08 08:41:54 MarkDuplicates Tracking 107502 as yet unmatched pairs. 106925 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 2s. Last read position: chr2:32,464,706
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 109997 as yet unmatched pairs. 109413 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:55s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 472179 as yet unmatched pairs. 95656 records in RAM.
INFO 2026-06-08 08:42:00 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:42:00 MarkDuplicates Tracking 991277 as yet unmatched pairs. 75662 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,409
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 1014205 as yet unmatched pairs. 74933 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr2:42,134,259
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 1048703 as yet unmatched pairs. 72120 records in RAM.
INFO 2026-06-08 08:42:05 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr2:43,982,270
INFO 2026-06-08 08:42:05 MarkDuplicates Tracking 1047420 as yet unmatched pairs. 70833 records in RAM.
INFO 2026-06-08 08:42:07 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr2:54,599,119
INFO 2026-06-08 08:42:07 MarkDuplicates Tracking 1045629 as yet unmatched pairs. 69033 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 1s. Last read position: chr2:55,244,126
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 1043052 as yet unmatched pairs. 66449 records in RAM.
INFO 2026-06-08 08:42:11 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:02:08s. Time for last 1,000,000: 1s. Last read position: chr2:65,239,905
INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 1041845 as yet unmatched pairs. 65236 records in RAM.
INFO 2026-06-08 08:42:13 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 1s. Last read position: chr2:71,433,213
INFO 2026-06-08 08:42:13 MarkDuplicates Tracking 1039686 as yet unmatched pairs. 63070 records in RAM.
INFO 2026-06-08 08:42:15 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 2s. Last read position: chr2:74,462,627
INFO 2026-06-08 08:42:15 MarkDuplicates Tracking 1038149 as yet unmatched pairs. 61524 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr2:85,354,340
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 1035826 as yet unmatched pairs. 59189 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr2:88,700,039
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 1034543 as yet unmatched pairs. 57890 records in RAM.
INFO 2026-06-08 08:42:21 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:19s. Time for last 1,000,000: 2s. Last read position: chr2:96,619,601
INFO 2026-06-08 08:42:21 MarkDuplicates Tracking 1032661 as yet unmatched pairs. 56001 records in RAM.
INFO 2026-06-08 08:42:24 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 2s. Last read position: chr2:101,033,584
INFO 2026-06-08 08:42:24 MarkDuplicates Tracking 1031111 as yet unmatched pairs. 54433 records in RAM.
INFO 2026-06-08 08:42:26 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 2s. Last read position: chr2:108,753,467
INFO 2026-06-08 08:42:26 MarkDuplicates Tracking 1031228 as yet unmatched pairs. 54540 records in RAM.
INFO 2026-06-08 08:42:28 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 2s. Last read position: chr2:109,398,757
INFO 2026-06-08 08:42:28 MarkDuplicates Tracking 1028019 as yet unmatched pairs. 51325 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr2:112,388,056
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 1027131 as yet unmatched pairs. 50426 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr2:120,222,454
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 1025810 as yet unmatched pairs. 49096 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:31s. Time for last 1,000,000: 1s. Last read position: chr2:131,052,820
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 1023896 as yet unmatched pairs. 47166 records in RAM.
INFO 2026-06-08 08:42:36 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 2s. Last read position: chr2:152,669,172
INFO 2026-06-08 08:42:36 MarkDuplicates Tracking 1022883 as yet unmatched pairs. 46141 records in RAM.
INFO 2026-06-08 08:42:38 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:35s. Time for last 1,000,000: 2s. Last read position: chr2:168,129,731
INFO 2026-06-08 08:42:38 MarkDuplicates Tracking 1020809 as yet unmatched pairs. 44051 records in RAM.
INFO 2026-06-08 08:42:40 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr2:174,720,449
INFO 2026-06-08 08:42:40 MarkDuplicates Tracking 1018691 as yet unmatched pairs. 41924 records in RAM.
INFO 2026-06-08 08:42:43 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:40s. Time for last 1,000,000: 2s. Last read position: chr2:182,775,387
INFO 2026-06-08 08:42:43 MarkDuplicates Tracking 1017598 as yet unmatched pairs. 40826 records in RAM.
INFO 2026-06-08 08:42:45 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr2:188,995,690
INFO 2026-06-08 08:42:45 MarkDuplicates Tracking 1019985 as yet unmatched pairs. 43200 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 2s. Last read position: chr2:189,007,896
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 1019466 as yet unmatched pairs. 42673 records in RAM.
INFO 2026-06-08 08:42:49 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr2:190,905,029
INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 1011194 as yet unmatched pairs. 34383 records in RAM.
INFO 2026-06-08 08:42:51 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 1s. Last read position: chr2:200,853,925
INFO 2026-06-08 08:42:51 MarkDuplicates Tracking 1008994 as yet unmatched pairs. 32176 records in RAM.
INFO 2026-06-08 08:42:53 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr2:207,567,466
INFO 2026-06-08 08:42:53 MarkDuplicates Tracking 1008274 as yet unmatched pairs. 31448 records in RAM.
INFO 2026-06-08 08:42:55 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 2s. Last read position: chr2:215,364,962
INFO 2026-06-08 08:42:55 MarkDuplicates Tracking 1017962 as yet unmatched pairs. 41132 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 2s. Last read position: chr2:215,372,215
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 1021620 as yet unmatched pairs. 44778 records in RAM.
INFO 2026-06-08 08:43:00 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 2s. Last read position: chr2:215,376,599
INFO 2026-06-08 08:43:00 MarkDuplicates Tracking 1017671 as yet unmatched pairs. 40829 records in RAM.
INFO 2026-06-08 08:43:02 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 2s. Last read position: chr2:215,384,102
INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 1010042 as yet unmatched pairs. 33197 records in RAM.
INFO 2026-06-08 08:43:04 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 1s. Last read position: chr2:215,397,144
INFO 2026-06-08 08:43:04 MarkDuplicates Tracking 1021017 as yet unmatched pairs. 44172 records in RAM.
INFO 2026-06-08 08:43:06 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 2s. Last read position: chr2:215,407,269
INFO 2026-06-08 08:43:06 MarkDuplicates Tracking 1006531 as yet unmatched pairs. 29685 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 2s. Last read position: chr2:215,419,321
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 997509 as yet unmatched pairs. 20662 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 2s. Last read position: chr2:215,428,300
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 1005427 as yet unmatched pairs. 28578 records in RAM.
INFO 2026-06-08 08:43:14 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:03:11s. Time for last 1,000,000: 2s. Last read position: chr2:216,161,985
INFO 2026-06-08 08:43:14 MarkDuplicates Tracking 991956 as yet unmatched pairs. 15104 records in RAM.
INFO 2026-06-08 08:43:16 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 2s. Last read position: chr2:218,423,825
INFO 2026-06-08 08:43:16 MarkDuplicates Tracking 989823 as yet unmatched pairs. 12961 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 2s. Last read position: chr2:219,505,481
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 987977 as yet unmatched pairs. 11112 records in RAM.
INFO 2026-06-08 08:43:20 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr2:230,202,613
INFO 2026-06-08 08:43:20 MarkDuplicates Tracking 985449 as yet unmatched pairs. 8562 records in RAM.
INFO 2026-06-08 08:43:22 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 1s. Last read position: chr2:231,711,961
INFO 2026-06-08 08:43:22 MarkDuplicates Tracking 986502 as yet unmatched pairs. 9610 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:03:21s. Time for last 1,000,000: 1s. Last read position: chr2:237,344,279
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 982724 as yet unmatched pairs. 5826 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:03:23s. Time for last 1,000,000: 1s. Last read position: chr2:237,911,629
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 979979 as yet unmatched pairs. 3077 records in RAM.
INFO 2026-06-08 08:43:27 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 1s. Last read position: chr2:241,256,310
INFO 2026-06-08 08:43:27 MarkDuplicates Tracking 979465 as yet unmatched pairs. 2544 records in RAM.
INFO 2026-06-08 08:43:30 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr3:9,464,426
INFO 2026-06-08 08:43:30 MarkDuplicates Tracking 976380 as yet unmatched pairs. 53551 records in RAM.
INFO 2026-06-08 08:43:31 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 1s. Last read position: chr3:12,836,134
INFO 2026-06-08 08:43:31 MarkDuplicates Tracking 976635 as yet unmatched pairs. 53793 records in RAM.
INFO 2026-06-08 08:43:33 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr3:23,918,502
INFO 2026-06-08 08:43:33 MarkDuplicates Tracking 972666 as yet unmatched pairs. 49812 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:32s. Time for last 1,000,000: 1s. Last read position: chr3:37,321,839
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 970562 as yet unmatched pairs. 47682 records in RAM.
INFO 2026-06-08 08:43:36 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 1s. Last read position: chr3:40,462,007
INFO 2026-06-08 08:43:36 MarkDuplicates Tracking 970606 as yet unmatched pairs. 47714 records in RAM.
INFO 2026-06-08 08:43:38 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:35s. Time for last 1,000,000: 1s. Last read position: chr3:45,719,538
INFO 2026-06-08 08:43:38 MarkDuplicates Tracking 967037 as yet unmatched pairs. 44142 records in RAM.
INFO 2026-06-08 08:43:40 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:37s. Time for last 1,000,000: 1s. Last read position: chr3:47,661,318
INFO 2026-06-08 08:43:40 MarkDuplicates Tracking 965292 as yet unmatched pairs. 42390 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:39s. Time for last 1,000,000: 1s. Last read position: chr3:48,578,453
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 963647 as yet unmatched pairs. 40743 records in RAM.
INFO 2026-06-08 08:43:43 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr3:49,100,235
INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 961506 as yet unmatched pairs. 38593 records in RAM.
INFO 2026-06-08 08:43:45 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 2s. Last read position: chr3:49,721,869
INFO 2026-06-08 08:43:45 MarkDuplicates Tracking 959723 as yet unmatched pairs. 36809 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:44s. Time for last 1,000,000: 1s. Last read position: chr3:51,420,253
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 957053 as yet unmatched pairs. 34125 records in RAM.
INFO 2026-06-08 08:43:48 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr3:52,514,772
INFO 2026-06-08 08:43:48 MarkDuplicates Tracking 955350 as yet unmatched pairs. 32420 records in RAM.
INFO 2026-06-08 08:43:50 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:47s. Time for last 1,000,000: 1s. Last read position: chr3:57,572,172
INFO 2026-06-08 08:43:50 MarkDuplicates Tracking 954670 as yet unmatched pairs. 31736 records in RAM.
INFO 2026-06-08 08:43:53 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 2s. Last read position: chr3:65,356,768
INFO 2026-06-08 08:43:53 MarkDuplicates Tracking 951497 as yet unmatched pairs. 28534 records in RAM.
INFO 2026-06-08 08:43:55 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr3:99,850,278
INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 950387 as yet unmatched pairs. 27415 records in RAM.
INFO 2026-06-08 08:43:56 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr3:112,563,486
INFO 2026-06-08 08:43:56 MarkDuplicates Tracking 948175 as yet unmatched pairs. 25197 records in RAM.
INFO 2026-06-08 08:43:59 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:56s. Time for last 1,000,000: 2s. Last read position: chr3:122,359,844
INFO 2026-06-08 08:43:59 MarkDuplicates Tracking 946174 as yet unmatched pairs. 23170 records in RAM.
INFO 2026-06-08 08:44:01 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:58s. Time for last 1,000,000: 1s. Last read position: chr3:126,026,397
INFO 2026-06-08 08:44:01 MarkDuplicates Tracking 944635 as yet unmatched pairs. 21615 records in RAM.
INFO 2026-06-08 08:44:02 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:04:00s. Time for last 1,000,000: 1s. Last read position: chr3:129,094,998
INFO 2026-06-08 08:44:02 MarkDuplicates Tracking 942583 as yet unmatched pairs. 19550 records in RAM.
INFO 2026-06-08 08:44:04 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr3:133,643,219
INFO 2026-06-08 08:44:04 MarkDuplicates Tracking 940587 as yet unmatched pairs. 17549 records in RAM.
INFO 2026-06-08 08:44:06 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 1s. Last read position: chr3:146,533,545
INFO 2026-06-08 08:44:06 MarkDuplicates Tracking 938910 as yet unmatched pairs. 15856 records in RAM.
INFO 2026-06-08 08:44:08 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 1s. Last read position: chr3:160,430,663
INFO 2026-06-08 08:44:08 MarkDuplicates Tracking 936853 as yet unmatched pairs. 13785 records in RAM.
INFO 2026-06-08 08:44:09 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 1s. Last read position: chr3:179,348,900
INFO 2026-06-08 08:44:09 MarkDuplicates Tracking 935101 as yet unmatched pairs. 12017 records in RAM.
INFO 2026-06-08 08:44:11 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 1s. Last read position: chr3:184,321,518
INFO 2026-06-08 08:44:11 MarkDuplicates Tracking 934036 as yet unmatched pairs. 10943 records in RAM.
INFO 2026-06-08 08:44:13 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr3:187,729,608
INFO 2026-06-08 08:44:13 MarkDuplicates Tracking 931648 as yet unmatched pairs. 8544 records in RAM.
INFO 2026-06-08 08:44:14 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:04:11s. Time for last 1,000,000: 1s. Last read position: chr3:195,751,010
INFO 2026-06-08 08:44:14 MarkDuplicates Tracking 929839 as yet unmatched pairs. 6732 records in RAM.
INFO 2026-06-08 08:44:16 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:04:13s. Time for last 1,000,000: 1s. Last read position: chr3:195,780,591
INFO 2026-06-08 08:44:16 MarkDuplicates Tracking 936809 as yet unmatched pairs. 13691 records in RAM.
INFO 2026-06-08 08:44:17 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr3:195,782,658
INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 937472 as yet unmatched pairs. 14350 records in RAM.
INFO 2026-06-08 08:44:18 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 1s. Last read position: chr3:195,784,997
INFO 2026-06-08 08:44:18 MarkDuplicates Tracking 934886 as yet unmatched pairs. 11758 records in RAM.
INFO 2026-06-08 08:44:20 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr3:195,787,378
INFO 2026-06-08 08:44:20 MarkDuplicates Tracking 928957 as yet unmatched pairs. 5825 records in RAM.
INFO 2026-06-08 08:44:22 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr3:196,939,256
INFO 2026-06-08 08:44:22 MarkDuplicates Tracking 923969 as yet unmatched pairs. 834 records in RAM.
INFO 2026-06-08 08:44:23 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr4:1,238,209
INFO 2026-06-08 08:44:23 MarkDuplicates Tracking 923311 as yet unmatched pairs. 28021 records in RAM.
INFO 2026-06-08 08:44:25 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 1s. Last read position: chr4:2,881,924
INFO 2026-06-08 08:44:25 MarkDuplicates Tracking 919463 as yet unmatched pairs. 24165 records in RAM.
INFO 2026-06-08 08:44:27 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr4:7,778,762
INFO 2026-06-08 08:44:27 MarkDuplicates Tracking 918235 as yet unmatched pairs. 22937 records in RAM.
INFO 2026-06-08 08:44:28 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr4:24,576,428
INFO 2026-06-08 08:44:28 MarkDuplicates Tracking 915841 as yet unmatched pairs. 20538 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:27s. Time for last 1,000,000: 1s. Last read position: chr4:40,154,200
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 913727 as yet unmatched pairs. 18418 records in RAM.
INFO 2026-06-08 08:44:31 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:29s. Time for last 1,000,000: 1s. Last read position: chr4:56,448,577
INFO 2026-06-08 08:44:31 MarkDuplicates Tracking 912596 as yet unmatched pairs. 17276 records in RAM.
INFO 2026-06-08 08:44:33 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr4:73,740,671
INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 913321 as yet unmatched pairs. 17997 records in RAM.
INFO 2026-06-08 08:44:35 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:32s. Time for last 1,000,000: 1s. Last read position: chr4:76,755,056
INFO 2026-06-08 08:44:35 MarkDuplicates Tracking 908352 as yet unmatched pairs. 13018 records in RAM.
INFO 2026-06-08 08:44:36 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 1s. Last read position: chr4:86,732,685
INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 906282 as yet unmatched pairs. 10934 records in RAM.
INFO 2026-06-08 08:44:38 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr4:102,597,617
INFO 2026-06-08 08:44:38 MarkDuplicates Tracking 904566 as yet unmatched pairs. 9206 records in RAM.
INFO 2026-06-08 08:44:40 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr4:118,764,906
INFO 2026-06-08 08:44:40 MarkDuplicates Tracking 903044 as yet unmatched pairs. 7680 records in RAM.
INFO 2026-06-08 08:44:41 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 1s. Last read position: chr4:139,698,441
INFO 2026-06-08 08:44:41 MarkDuplicates Tracking 901315 as yet unmatched pairs. 5929 records in RAM.
INFO 2026-06-08 08:44:43 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr4:151,128,309
INFO 2026-06-08 08:44:43 MarkDuplicates Tracking 899305 as yet unmatched pairs. 3904 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr4:168,924,996
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 898096 as yet unmatched pairs. 2687 records in RAM.
INFO 2026-06-08 08:44:46 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 2s. Last read position: chr4:186,708,974
INFO 2026-06-08 08:44:46 MarkDuplicates Tracking 896230 as yet unmatched pairs. 814 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 2s. Last read position: chr5:10,414,487
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 894452 as yet unmatched pairs. 45869 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 1s. Last read position: chr5:16,666,717
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 891823 as yet unmatched pairs. 43234 records in RAM.
INFO 2026-06-08 08:44:52 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr5:38,945,683
INFO 2026-06-08 08:44:52 MarkDuplicates Tracking 890052 as yet unmatched pairs. 41445 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:51s. Time for last 1,000,000: 1s. Last read position: chr5:56,504,757
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 888646 as yet unmatched pairs. 40021 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr5:71,104,808
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 886896 as yet unmatched pairs. 38257 records in RAM.
INFO 2026-06-08 08:44:57 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr5:77,708,266
INFO 2026-06-08 08:44:57 MarkDuplicates Tracking 887249 as yet unmatched pairs. 38597 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:56s. Time for last 1,000,000: 1s. Last read position: chr5:86,618,057
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 886477 as yet unmatched pairs. 37818 records in RAM.
INFO 2026-06-08 08:45:01 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr5:109,770,360
INFO 2026-06-08 08:45:01 MarkDuplicates Tracking 881948 as yet unmatched pairs. 33267 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr5:128,084,626
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 880520 as yet unmatched pairs. 31824 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr5:134,173,927
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 878481 as yet unmatched pairs. 29779 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr5:138,465,737
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 876985 as yet unmatched pairs. 28268 records in RAM.
INFO 2026-06-08 08:45:07 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 1s. Last read position: chr5:139,476,174
INFO 2026-06-08 08:45:07 MarkDuplicates Tracking 874726 as yet unmatched pairs. 26004 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr5:141,224,926
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 872983 as yet unmatched pairs. 24240 records in RAM.
INFO 2026-06-08 08:45:11 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr5:142,314,586
INFO 2026-06-08 08:45:11 MarkDuplicates Tracking 871153 as yet unmatched pairs. 22407 records in RAM.
INFO 2026-06-08 08:45:13 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr5:150,119,500
INFO 2026-06-08 08:45:13 MarkDuplicates Tracking 870520 as yet unmatched pairs. 21765 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr5:150,402,534
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 891903 as yet unmatched pairs. 43139 records in RAM.
INFO 2026-06-08 08:45:16 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr5:150,407,152
INFO 2026-06-08 08:45:16 MarkDuplicates Tracking 872601 as yet unmatched pairs. 23836 records in RAM.
INFO 2026-06-08 08:45:18 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:05:15s. Time for last 1,000,000: 1s. Last read position: chr5:151,137,265
INFO 2026-06-08 08:45:18 MarkDuplicates Tracking 863217 as yet unmatched pairs. 14447 records in RAM.
INFO 2026-06-08 08:45:19 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr5:157,794,898
INFO 2026-06-08 08:45:19 MarkDuplicates Tracking 861311 as yet unmatched pairs. 12534 records in RAM.
INFO 2026-06-08 08:45:21 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 1s. Last read position: chr5:171,391,304
INFO 2026-06-08 08:45:21 MarkDuplicates Tracking 868857 as yet unmatched pairs. 20071 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:05:20s. Time for last 1,000,000: 1s. Last read position: chr5:171,868,736
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 858074 as yet unmatched pairs. 9276 records in RAM.
INFO 2026-06-08 08:45:25 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 1s. Last read position: chr5:177,135,093
INFO 2026-06-08 08:45:25 MarkDuplicates Tracking 856140 as yet unmatched pairs. 7341 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr5:178,205,843
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 854319 as yet unmatched pairs. 5517 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr5:179,774,107
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 852268 as yet unmatched pairs. 3456 records in RAM.
INFO 2026-06-08 08:45:30 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 1s. Last read position: chr5:180,792,828
INFO 2026-06-08 08:45:30 MarkDuplicates Tracking 851120 as yet unmatched pairs. 2304 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 1s. Last read position: chr6:3,139,384
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 848062 as yet unmatched pairs. 55521 records in RAM.
INFO 2026-06-08 08:45:33 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 1s. Last read position: chr6:7,579,364
INFO 2026-06-08 08:45:33 MarkDuplicates Tracking 846799 as yet unmatched pairs. 54255 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 2s. Last read position: chr6:18,207,430
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 844315 as yet unmatched pairs. 51769 records in RAM.
INFO 2026-06-08 08:45:37 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 1s. Last read position: chr6:26,156,972
INFO 2026-06-08 08:45:37 MarkDuplicates Tracking 842161 as yet unmatched pairs. 49604 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 1s. Last read position: chr6:27,807,519
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 841617 as yet unmatched pairs. 49060 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 1s. Last read position: chr6:29,888,668
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 839687 as yet unmatched pairs. 47127 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr6:30,577,437
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 837044 as yet unmatched pairs. 44481 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr6:31,269,052
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 840307 as yet unmatched pairs. 47722 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr6:31,627,048
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 833957 as yet unmatched pairs. 41369 records in RAM.
INFO 2026-06-08 08:45:48 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:45s. Time for last 1,000,000: 1s. Last read position: chr6:31,781,496
INFO 2026-06-08 08:45:48 MarkDuplicates Tracking 831783 as yet unmatched pairs. 39190 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr6:31,817,579
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 831453 as yet unmatched pairs. 38860 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr6:31,829,671
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 830716 as yet unmatched pairs. 38120 records in RAM.
INFO 2026-06-08 08:45:52 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr6:32,089,225
INFO 2026-06-08 08:45:52 MarkDuplicates Tracking 827475 as yet unmatched pairs. 34875 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr6:32,856,148
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 825911 as yet unmatched pairs. 33304 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr6:33,313,352
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 825353 as yet unmatched pairs. 32743 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr6:34,418,402
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 825305 as yet unmatched pairs. 32683 records in RAM.
INFO 2026-06-08 08:45:59 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr6:36,975,709
INFO 2026-06-08 08:45:59 MarkDuplicates Tracking 821404 as yet unmatched pairs. 28776 records in RAM.
INFO 2026-06-08 08:46:01 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:58s. Time for last 1,000,000: 1s. Last read position: chr6:42,077,207
INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 817720 as yet unmatched pairs. 25083 records in RAM.
INFO 2026-06-08 08:46:02 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr6:43,516,011
INFO 2026-06-08 08:46:02 MarkDuplicates Tracking 815860 as yet unmatched pairs. 23216 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:06:02s. Time for last 1,000,000: 1s. Last read position: chr6:44,829,752
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 813658 as yet unmatched pairs. 21006 records in RAM.
INFO 2026-06-08 08:46:06 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr6:57,325,932
INFO 2026-06-08 08:46:06 MarkDuplicates Tracking 812116 as yet unmatched pairs. 19452 records in RAM.
INFO 2026-06-08 08:46:08 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr6:75,313,114
INFO 2026-06-08 08:46:08 MarkDuplicates Tracking 810374 as yet unmatched pairs. 17703 records in RAM.
INFO 2026-06-08 08:46:09 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr6:89,342,386
INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 809254 as yet unmatched pairs. 16570 records in RAM.
INFO 2026-06-08 08:46:11 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr6:108,049,352
INFO 2026-06-08 08:46:11 MarkDuplicates Tracking 806792 as yet unmatched pairs. 14102 records in RAM.
INFO 2026-06-08 08:46:12 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr6:117,548,031
INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 804987 as yet unmatched pairs. 12286 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:06:11s. Time for last 1,000,000: 1s. Last read position: chr6:131,951,164
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 804449 as yet unmatched pairs. 11747 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 1s. Last read position: chr6:138,307,385
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 801430 as yet unmatched pairs. 8724 records in RAM.
INFO 2026-06-08 08:46:17 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 1s. Last read position: chr6:149,683,744
INFO 2026-06-08 08:46:17 MarkDuplicates Tracking 799504 as yet unmatched pairs. 6792 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr6:158,489,628
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 797514 as yet unmatched pairs. 4794 records in RAM.
INFO 2026-06-08 08:46:21 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 1s. Last read position: chr6:159,692,814
INFO 2026-06-08 08:46:21 MarkDuplicates Tracking 796480 as yet unmatched pairs. 3743 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr6:169,223,383
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 794693 as yet unmatched pairs. 1949 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr7:1,476,049
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 792168 as yet unmatched pairs. 54949 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr7:4,996,739
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 789679 as yet unmatched pairs. 52456 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:06:25s. Time for last 1,000,000: 1s. Last read position: chr7:5,527,862
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 795950 as yet unmatched pairs. 58722 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:06:27s. Time for last 1,000,000: 1s. Last read position: chr7:5,529,340
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 804532 as yet unmatched pairs. 67296 records in RAM.
INFO 2026-06-08 08:46:32 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 2s. Last read position: chr7:11,375,818
INFO 2026-06-08 08:46:32 MarkDuplicates Tracking 783514 as yet unmatched pairs. 46264 records in RAM.
INFO 2026-06-08 08:46:34 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:06:32s. Time for last 1,000,000: 2s. Last read position: chr7:22,511,876
INFO 2026-06-08 08:46:34 MarkDuplicates Tracking 781987 as yet unmatched pairs. 44729 records in RAM.
INFO 2026-06-08 08:46:36 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr7:30,632,038
INFO 2026-06-08 08:46:36 MarkDuplicates Tracking 780355 as yet unmatched pairs. 43093 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr7:44,104,700
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 778836 as yet unmatched pairs. 41567 records in RAM.
INFO 2026-06-08 08:46:39 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr7:45,084,220
INFO 2026-06-08 08:46:39 MarkDuplicates Tracking 776516 as yet unmatched pairs. 39241 records in RAM.
INFO 2026-06-08 08:46:41 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr7:65,388,005
INFO 2026-06-08 08:46:41 MarkDuplicates Tracking 774589 as yet unmatched pairs. 37293 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 1s. Last read position: chr7:73,442,310
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 773484 as yet unmatched pairs. 36182 records in RAM.
INFO 2026-06-08 08:46:44 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 1s. Last read position: chr7:74,711,073
INFO 2026-06-08 08:46:44 MarkDuplicates Tracking 771856 as yet unmatched pairs. 34548 records in RAM.
INFO 2026-06-08 08:46:46 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 1s. Last read position: chr7:76,302,860
INFO 2026-06-08 08:46:46 MarkDuplicates Tracking 777219 as yet unmatched pairs. 39904 records in RAM.
INFO 2026-06-08 08:46:47 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 1s. Last read position: chr7:87,978,377
INFO 2026-06-08 08:46:47 MarkDuplicates Tracking 768166 as yet unmatched pairs. 30843 records in RAM.
INFO 2026-06-08 08:46:49 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr7:94,400,199
INFO 2026-06-08 08:46:49 MarkDuplicates Tracking 771347 as yet unmatched pairs. 34021 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 1s. Last read position: chr7:94,416,465
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 771524 as yet unmatched pairs. 34198 records in RAM.
INFO 2026-06-08 08:46:52 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr7:96,694,850
INFO 2026-06-08 08:46:52 MarkDuplicates Tracking 762682 as yet unmatched pairs. 25350 records in RAM.
INFO 2026-06-08 08:46:54 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 1s. Last read position: chr7:99,672,789
INFO 2026-06-08 08:46:54 MarkDuplicates Tracking 760320 as yet unmatched pairs. 22988 records in RAM.
INFO 2026-06-08 08:46:56 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:53s. Time for last 1,000,000: 1s. Last read position: chr7:100,683,301
INFO 2026-06-08 08:46:56 MarkDuplicates Tracking 758199 as yet unmatched pairs. 20858 records in RAM.
INFO 2026-06-08 08:46:57 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:55s. Time for last 1,000,000: 1s. Last read position: chr7:100,958,996
INFO 2026-06-08 08:46:57 MarkDuplicates Tracking 756908 as yet unmatched pairs. 19555 records in RAM.
INFO 2026-06-08 08:46:59 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,883
INFO 2026-06-08 08:46:59 MarkDuplicates Tracking 757080 as yet unmatched pairs. 19727 records in RAM.
INFO 2026-06-08 08:47:00 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,882
INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 755110 as yet unmatched pairs. 17757 records in RAM.
INFO 2026-06-08 08:47:02 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:07:00s. Time for last 1,000,000: 2s. Last read position: chr7:102,494,628
INFO 2026-06-08 08:47:02 MarkDuplicates Tracking 753768 as yet unmatched pairs. 16408 records in RAM.
INFO 2026-06-08 08:47:04 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr7:107,044,965
INFO 2026-06-08 08:47:04 MarkDuplicates Tracking 752450 as yet unmatched pairs. 15071 records in RAM.
INFO 2026-06-08 08:47:06 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr7:121,371,370
INFO 2026-06-08 08:47:06 MarkDuplicates Tracking 751100 as yet unmatched pairs. 13704 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr7:128,086,938
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 752206 as yet unmatched pairs. 14806 records in RAM.
INFO 2026-06-08 08:47:10 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 1s. Last read position: chr7:134,309,442
INFO 2026-06-08 08:47:10 MarkDuplicates Tracking 747249 as yet unmatched pairs. 9827 records in RAM.
INFO 2026-06-08 08:47:11 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr7:139,231,530
INFO 2026-06-08 08:47:11 MarkDuplicates Tracking 745419 as yet unmatched pairs. 7989 records in RAM.
INFO 2026-06-08 08:47:13 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 1s. Last read position: chr7:143,383,096
INFO 2026-06-08 08:47:13 MarkDuplicates Tracking 745423 as yet unmatched pairs. 7983 records in RAM.
INFO 2026-06-08 08:47:15 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 1s. Last read position: chr7:149,223,870
INFO 2026-06-08 08:47:15 MarkDuplicates Tracking 742459 as yet unmatched pairs. 5018 records in RAM.
INFO 2026-06-08 08:47:16 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 1s. Last read position: chr7:151,082,266
INFO 2026-06-08 08:47:16 MarkDuplicates Tracking 740305 as yet unmatched pairs. 2841 records in RAM.
INFO 2026-06-08 08:47:18 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr7:158,133,924
INFO 2026-06-08 08:47:18 MarkDuplicates Tracking 738266 as yet unmatched pairs. 783 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 2s. Last read position: chr8:11,845,084
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 739544 as yet unmatched pairs. 41634 records in RAM.
INFO 2026-06-08 08:47:23 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 1s. Last read position: chr8:22,123,642
INFO 2026-06-08 08:47:23 MarkDuplicates Tracking 734372 as yet unmatched pairs. 36451 records in RAM.
INFO 2026-06-08 08:47:24 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr8:23,322,270
INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 732599 as yet unmatched pairs. 34671 records in RAM.
INFO 2026-06-08 08:47:26 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 1s. Last read position: chr8:30,679,601
INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 730937 as yet unmatched pairs. 32995 records in RAM.
INFO 2026-06-08 08:47:28 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 1s. Last read position: chr8:38,412,440
INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 728469 as yet unmatched pairs. 30512 records in RAM.
INFO 2026-06-08 08:47:29 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr8:42,306,364
INFO 2026-06-08 08:47:29 MarkDuplicates Tracking 726639 as yet unmatched pairs. 28676 records in RAM.
INFO 2026-06-08 08:47:31 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 1s. Last read position: chr8:56,073,222
INFO 2026-06-08 08:47:31 MarkDuplicates Tracking 731011 as yet unmatched pairs. 33044 records in RAM.
INFO 2026-06-08 08:47:33 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:07:30s. Time for last 1,000,000: 1s. Last read position: chr8:69,623,969
INFO 2026-06-08 08:47:33 MarkDuplicates Tracking 723985 as yet unmatched pairs. 26010 records in RAM.
INFO 2026-06-08 08:47:35 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 2s. Last read position: chr8:85,464,064
INFO 2026-06-08 08:47:35 MarkDuplicates Tracking 721377 as yet unmatched pairs. 23396 records in RAM.
INFO 2026-06-08 08:47:37 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:35s. Time for last 1,000,000: 1s. Last read position: chr8:99,013,925
INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 719796 as yet unmatched pairs. 21807 records in RAM.
INFO 2026-06-08 08:47:39 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:36s. Time for last 1,000,000: 1s. Last read position: chr8:100,930,062
INFO 2026-06-08 08:47:39 MarkDuplicates Tracking 718760 as yet unmatched pairs. 20769 records in RAM.
INFO 2026-06-08 08:48:45 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 65s. Last read position: chr8:120,147,840
INFO 2026-06-08 08:48:45 MarkDuplicates Tracking 715823 as yet unmatched pairs. 17826 records in RAM.
INFO 2026-06-08 08:48:47 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:08:44s. Time for last 1,000,000: 2s. Last read position: chr8:131,985,008
INFO 2026-06-08 08:48:47 MarkDuplicates Tracking 713901 as yet unmatched pairs. 15897 records in RAM.
INFO 2026-06-08 08:48:49 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:08:46s. Time for last 1,000,000: 1s. Last read position: chr8:143,577,152
INFO 2026-06-08 08:48:49 MarkDuplicates Tracking 712081 as yet unmatched pairs. 14066 records in RAM.
INFO 2026-06-08 08:48:51 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,298
INFO 2026-06-08 08:48:51 MarkDuplicates Tracking 709682 as yet unmatched pairs. 11667 records in RAM.
INFO 2026-06-08 08:48:52 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:08:49s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,341
INFO 2026-06-08 08:48:52 MarkDuplicates Tracking 712758 as yet unmatched pairs. 14742 records in RAM.
INFO 2026-06-08 08:48:53 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,192
INFO 2026-06-08 08:48:53 MarkDuplicates Tracking 708766 as yet unmatched pairs. 10750 records in RAM.
INFO 2026-06-08 08:48:55 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:08:52s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,331
INFO 2026-06-08 08:48:55 MarkDuplicates Tracking 708701 as yet unmatched pairs. 10685 records in RAM.
INFO 2026-06-08 08:48:56 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 1s. Last read position: chr8:143,866,303
INFO 2026-06-08 08:48:56 MarkDuplicates Tracking 707086 as yet unmatched pairs. 9067 records in RAM.
INFO 2026-06-08 08:48:57 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 1s. Last read position: chr8:143,919,260
INFO 2026-06-08 08:48:57 MarkDuplicates Tracking 706725 as yet unmatched pairs. 8705 records in RAM.
INFO 2026-06-08 08:48:59 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 1s. Last read position: chr8:143,929,790
INFO 2026-06-08 08:48:59 MarkDuplicates Tracking 703902 as yet unmatched pairs. 5873 records in RAM.
INFO 2026-06-08 08:49:01 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:08:58s. Time for last 1,000,000: 1s. Last read position: chr8:144,309,772
INFO 2026-06-08 08:49:01 MarkDuplicates Tracking 701069 as yet unmatched pairs. 3033 records in RAM.
INFO 2026-06-08 08:49:03 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:09:00s. Time for last 1,000,000: 1s. Last read position: chr8:144,791,992
INFO 2026-06-08 08:49:03 MarkDuplicates Tracking 699635 as yet unmatched pairs. 1587 records in RAM.
INFO 2026-06-08 08:49:05 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 2s. Last read position: chr9:14,307,087
INFO 2026-06-08 08:49:05 MarkDuplicates Tracking 698306 as yet unmatched pairs. 43231 records in RAM.
INFO 2026-06-08 08:49:06 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 1s. Last read position: chr9:33,071,812
INFO 2026-06-08 08:49:06 MarkDuplicates Tracking 695088 as yet unmatched pairs. 40007 records in RAM.
INFO 2026-06-08 08:49:08 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 1s. Last read position: chr9:35,091,650
INFO 2026-06-08 08:49:08 MarkDuplicates Tracking 693054 as yet unmatched pairs. 37970 records in RAM.
INFO 2026-06-08 08:49:10 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:09:07s. Time for last 1,000,000: 1s. Last read position: chr9:35,829,796
INFO 2026-06-08 08:49:10 MarkDuplicates Tracking 690954 as yet unmatched pairs. 35866 records in RAM.
INFO 2026-06-08 08:49:11 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 1s. Last read position: chr9:70,278,548
INFO 2026-06-08 08:49:11 MarkDuplicates Tracking 689342 as yet unmatched pairs. 34233 records in RAM.
INFO 2026-06-08 08:49:13 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:09:10s. Time for last 1,000,000: 1s. Last read position: chr9:83,972,094
INFO 2026-06-08 08:49:13 MarkDuplicates Tracking 687960 as yet unmatched pairs. 32851 records in RAM.
INFO 2026-06-08 08:49:15 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:09:12s. Time for last 1,000,000: 1s. Last read position: chr9:93,107,808
INFO 2026-06-08 08:49:15 MarkDuplicates Tracking 685604 as yet unmatched pairs. 30493 records in RAM.
INFO 2026-06-08 08:49:17 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 1s. Last read position: chr9:98,080,996
INFO 2026-06-08 08:49:17 MarkDuplicates Tracking 684291 as yet unmatched pairs. 29161 records in RAM.
INFO 2026-06-08 08:49:18 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 1s. Last read position: chr9:101,554,761
INFO 2026-06-08 08:49:18 MarkDuplicates Tracking 681550 as yet unmatched pairs. 26411 records in RAM.
INFO 2026-06-08 08:49:20 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:09:18s. Time for last 1,000,000: 2s. Last read position: chr9:111,647,222
INFO 2026-06-08 08:49:20 MarkDuplicates Tracking 679741 as yet unmatched pairs. 24598 records in RAM.
INFO 2026-06-08 08:49:23 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:09:20s. Time for last 1,000,000: 2s. Last read position: chr9:114,788,681
INFO 2026-06-08 08:49:23 MarkDuplicates Tracking 677858 as yet unmatched pairs. 22712 records in RAM.
INFO 2026-06-08 08:49:24 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr9:122,322,543
INFO 2026-06-08 08:49:24 MarkDuplicates Tracking 676039 as yet unmatched pairs. 20886 records in RAM.
INFO 2026-06-08 08:49:26 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr9:127,447,934
INFO 2026-06-08 08:49:26 MarkDuplicates Tracking 676015 as yet unmatched pairs. 20854 records in RAM.
INFO 2026-06-08 08:49:28 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr9:128,152,279
INFO 2026-06-08 08:49:28 MarkDuplicates Tracking 674696 as yet unmatched pairs. 19528 records in RAM.
INFO 2026-06-08 08:49:29 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr9:128,691,908
INFO 2026-06-08 08:49:29 MarkDuplicates Tracking 672568 as yet unmatched pairs. 17399 records in RAM.
INFO 2026-06-08 08:49:31 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr9:130,494,936
INFO 2026-06-08 08:49:31 MarkDuplicates Tracking 669588 as yet unmatched pairs. 14416 records in RAM.
INFO 2026-06-08 08:49:33 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr9:132,300,782
INFO 2026-06-08 08:49:33 MarkDuplicates Tracking 666389 as yet unmatched pairs. 11207 records in RAM.
INFO 2026-06-08 08:49:34 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 1s. Last read position: chr9:134,642,125
INFO 2026-06-08 08:49:34 MarkDuplicates Tracking 665054 as yet unmatched pairs. 9863 records in RAM.
INFO 2026-06-08 08:49:36 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr9:136,050,168
INFO 2026-06-08 08:49:36 MarkDuplicates Tracking 662559 as yet unmatched pairs. 7365 records in RAM.
INFO 2026-06-08 08:49:37 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr9:136,506,780
INFO 2026-06-08 08:49:37 MarkDuplicates Tracking 660774 as yet unmatched pairs. 5571 records in RAM.
INFO 2026-06-08 08:49:39 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 1s. Last read position: chr9:137,040,881
INFO 2026-06-08 08:49:39 MarkDuplicates Tracking 660422 as yet unmatched pairs. 5214 records in RAM.
INFO 2026-06-08 08:49:41 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 1s. Last read position: chr9:137,552,101
INFO 2026-06-08 08:49:41 MarkDuplicates Tracking 656460 as yet unmatched pairs. 1250 records in RAM.
INFO 2026-06-08 08:49:43 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr10:5,813,227
INFO 2026-06-08 08:49:43 MarkDuplicates Tracking 654429 as yet unmatched pairs. 37544 records in RAM.
INFO 2026-06-08 08:49:44 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:41s. Time for last 1,000,000: 1s. Last read position: chr10:17,235,272
INFO 2026-06-08 08:49:44 MarkDuplicates Tracking 652762 as yet unmatched pairs. 35868 records in RAM.
INFO 2026-06-08 08:49:46 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 1s. Last read position: chr10:30,027,565
INFO 2026-06-08 08:49:46 MarkDuplicates Tracking 650195 as yet unmatched pairs. 33295 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr10:32,929,924
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 650033 as yet unmatched pairs. 33131 records in RAM.
INFO 2026-06-08 08:49:49 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr10:46,012,936
INFO 2026-06-08 08:49:49 MarkDuplicates Tracking 648944 as yet unmatched pairs. 32037 records in RAM.
INFO 2026-06-08 08:49:51 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr10:60,138,964
INFO 2026-06-08 08:49:51 MarkDuplicates Tracking 645581 as yet unmatched pairs. 28668 records in RAM.
INFO 2026-06-08 08:49:53 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 2s. Last read position: chr10:70,404,379
INFO 2026-06-08 08:49:53 MarkDuplicates Tracking 644107 as yet unmatched pairs. 27185 records in RAM.
INFO 2026-06-08 08:49:55 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr10:73,797,950
INFO 2026-06-08 08:49:55 MarkDuplicates Tracking 641679 as yet unmatched pairs. 24749 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr10:78,037,199
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 652320 as yet unmatched pairs. 35381 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr10:84,214,491
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 639093 as yet unmatched pairs. 22149 records in RAM.
INFO 2026-06-08 08:49:59 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr10:91,828,301
INFO 2026-06-08 08:49:59 MarkDuplicates Tracking 636646 as yet unmatched pairs. 19686 records in RAM.
INFO 2026-06-08 08:50:01 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr10:95,627,484
INFO 2026-06-08 08:50:01 MarkDuplicates Tracking 634614 as yet unmatched pairs. 17638 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr10:97,461,577
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 633076 as yet unmatched pairs. 16090 records in RAM.
INFO 2026-06-08 08:50:06 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 2s. Last read position: chr10:100,986,755
INFO 2026-06-08 08:50:06 MarkDuplicates Tracking 631132 as yet unmatched pairs. 14142 records in RAM.
INFO 2026-06-08 08:50:07 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr10:102,376,338
INFO 2026-06-08 08:50:07 MarkDuplicates Tracking 629096 as yet unmatched pairs. 12106 records in RAM.
INFO 2026-06-08 08:50:09 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:10:06s. Time for last 1,000,000: 1s. Last read position: chr10:103,897,559
INFO 2026-06-08 08:50:09 MarkDuplicates Tracking 626600 as yet unmatched pairs. 9602 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr10:119,042,680
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 624558 as yet unmatched pairs. 7553 records in RAM.
INFO 2026-06-08 08:50:12 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:10:09s. Time for last 1,000,000: 1s. Last read position: chr10:122,579,713
INFO 2026-06-08 08:50:12 MarkDuplicates Tracking 626714 as yet unmatched pairs. 9703 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr10:122,598,918
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 625179 as yet unmatched pairs. 8166 records in RAM.
INFO 2026-06-08 08:50:15 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 1s. Last read position: chr10:122,617,235
INFO 2026-06-08 08:50:15 MarkDuplicates Tracking 623397 as yet unmatched pairs. 6381 records in RAM.
INFO 2026-06-08 08:50:16 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:10:14s. Time for last 1,000,000: 1s. Last read position: chr10:126,055,153
INFO 2026-06-08 08:50:16 MarkDuplicates Tracking 619194 as yet unmatched pairs. 2170 records in RAM.
INFO 2026-06-08 08:50:18 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr10:133,352,005
INFO 2026-06-08 08:50:18 MarkDuplicates Tracking 617409 as yet unmatched pairs. 374 records in RAM.
INFO 2026-06-08 08:50:20 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 2s. Last read position: chr11:403,173
INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 615875 as yet unmatched pairs. 87446 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:10:19s. Time for last 1,000,000: 1s. Last read position: chr11:821,957
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 613699 as yet unmatched pairs. 85266 records in RAM.
INFO 2026-06-08 08:50:24 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr11:1,016,122
INFO 2026-06-08 08:50:24 MarkDuplicates Tracking 619089 as yet unmatched pairs. 90652 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 2s. Last read position: chr11:1,016,725
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 621458 as yet unmatched pairs. 93018 records in RAM.
INFO 2026-06-08 08:50:28 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 1s. Last read position: chr11:1,017,092
INFO 2026-06-08 08:50:28 MarkDuplicates Tracking 623508 as yet unmatched pairs. 95068 records in RAM.
INFO 2026-06-08 08:50:30 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr11:1,017,520
INFO 2026-06-08 08:50:30 MarkDuplicates Tracking 616841 as yet unmatched pairs. 88401 records in RAM.
INFO 2026-06-08 08:50:31 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 1s. Last read position: chr11:1,018,040
INFO 2026-06-08 08:50:31 MarkDuplicates Tracking 612931 as yet unmatched pairs. 84491 records in RAM.
INFO 2026-06-08 08:50:33 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr11:1,020,197
INFO 2026-06-08 08:50:33 MarkDuplicates Tracking 608407 as yet unmatched pairs. 79965 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr11:1,031,933
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 606503 as yet unmatched pairs. 78059 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 2s. Last read position: chr11:1,078,360
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 648820 as yet unmatched pairs. 120374 records in RAM.
INFO 2026-06-08 08:50:38 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:36s. Time for last 1,000,000: 1s. Last read position: chr11:1,083,755
INFO 2026-06-08 08:50:38 MarkDuplicates Tracking 610989 as yet unmatched pairs. 82538 records in RAM.
INFO 2026-06-08 08:50:40 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr11:1,088,010
INFO 2026-06-08 08:50:40 MarkDuplicates Tracking 614480 as yet unmatched pairs. 86028 records in RAM.
INFO 2026-06-08 08:50:42 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:39s. Time for last 1,000,000: 1s. Last read position: chr11:1,094,209
INFO 2026-06-08 08:50:42 MarkDuplicates Tracking 607530 as yet unmatched pairs. 79078 records in RAM.
INFO 2026-06-08 08:50:43 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr11:1,230,524
INFO 2026-06-08 08:50:43 MarkDuplicates Tracking 596084 as yet unmatched pairs. 67618 records in RAM.
INFO 2026-06-08 08:50:45 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:42s. Time for last 1,000,000: 1s. Last read position: chr11:1,243,227
INFO 2026-06-08 08:50:45 MarkDuplicates Tracking 594018 as yet unmatched pairs. 65550 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr11:1,245,038
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 593033 as yet unmatched pairs. 64561 records in RAM.
INFO 2026-06-08 08:50:48 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:46s. Time for last 1,000,000: 1s. Last read position: chr11:1,247,786
INFO 2026-06-08 08:50:48 MarkDuplicates Tracking 593219 as yet unmatched pairs. 64744 records in RAM.
INFO 2026-06-08 08:50:50 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr11:1,249,669
INFO 2026-06-08 08:50:50 MarkDuplicates Tracking 593363 as yet unmatched pairs. 64887 records in RAM.
INFO 2026-06-08 08:50:52 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:49s. Time for last 1,000,000: 1s. Last read position: chr11:1,256,211
INFO 2026-06-08 08:50:52 MarkDuplicates Tracking 590820 as yet unmatched pairs. 62342 records in RAM.
INFO 2026-06-08 08:50:53 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr11:2,846,928
INFO 2026-06-08 08:50:53 MarkDuplicates Tracking 586406 as yet unmatched pairs. 57921 records in RAM.
INFO 2026-06-08 08:50:55 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:52s. Time for last 1,000,000: 1s. Last read position: chr11:6,481,504
INFO 2026-06-08 08:50:55 MarkDuplicates Tracking 584534 as yet unmatched pairs. 56047 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:54s. Time for last 1,000,000: 1s. Last read position: chr11:9,420,435
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 583406 as yet unmatched pairs. 54917 records in RAM.
INFO 2026-06-08 08:50:58 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr11:14,468,786
INFO 2026-06-08 08:50:58 MarkDuplicates Tracking 580807 as yet unmatched pairs. 52317 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:57s. Time for last 1,000,000: 1s. Last read position: chr11:20,397,577
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 578591 as yet unmatched pairs. 50101 records in RAM.
INFO 2026-06-08 08:51:02 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr11:35,663,633
INFO 2026-06-08 08:51:02 MarkDuplicates Tracking 577282 as yet unmatched pairs. 48785 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr11:46,310,058
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 579361 as yet unmatched pairs. 50860 records in RAM.
INFO 2026-06-08 08:51:05 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 1s. Last read position: chr11:47,235,312
INFO 2026-06-08 08:51:05 MarkDuplicates Tracking 572994 as yet unmatched pairs. 44489 records in RAM.
INFO 2026-06-08 08:51:07 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:11:04s. Time for last 1,000,000: 1s. Last read position: chr11:57,600,040
INFO 2026-06-08 08:51:07 MarkDuplicates Tracking 571400 as yet unmatched pairs. 42880 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr11:60,935,941
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 570006 as yet unmatched pairs. 41481 records in RAM.
INFO 2026-06-08 08:51:11 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr11:61,771,654
INFO 2026-06-08 08:51:11 MarkDuplicates Tracking 568628 as yet unmatched pairs. 40100 records in RAM.
INFO 2026-06-08 08:51:13 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:11:10s. Time for last 1,000,000: 2s. Last read position: chr11:62,526,844
INFO 2026-06-08 08:51:13 MarkDuplicates Tracking 566752 as yet unmatched pairs. 38224 records in RAM.
INFO 2026-06-08 08:51:15 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:11:12s. Time for last 1,000,000: 1s. Last read position: chr11:62,633,013
INFO 2026-06-08 08:51:15 MarkDuplicates Tracking 565367 as yet unmatched pairs. 36833 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 1s. Last read position: chr11:63,976,234
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 564084 as yet unmatched pairs. 35549 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 1s. Last read position: chr11:64,601,332
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 560227 as yet unmatched pairs. 31692 records in RAM.
INFO 2026-06-08 08:51:19 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr11:65,130,258
INFO 2026-06-08 08:51:19 MarkDuplicates Tracking 558184 as yet unmatched pairs. 29645 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 1s. Last read position: chr11:65,627,511
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 556372 as yet unmatched pairs. 27811 records in RAM.
INFO 2026-06-08 08:51:23 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 1s. Last read position: chr11:66,060,669
INFO 2026-06-08 08:51:23 MarkDuplicates Tracking 554390 as yet unmatched pairs. 25827 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr11:67,250,585
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 552169 as yet unmatched pairs. 23605 records in RAM.
INFO 2026-06-08 08:51:26 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:11:23s. Time for last 1,000,000: 1s. Last read position: chr11:68,018,785
INFO 2026-06-08 08:51:26 MarkDuplicates Tracking 549874 as yet unmatched pairs. 21309 records in RAM.
INFO 2026-06-08 08:51:27 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr11:69,641,344
INFO 2026-06-08 08:51:27 MarkDuplicates Tracking 550379 as yet unmatched pairs. 21809 records in RAM.
INFO 2026-06-08 08:51:29 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:11:26s. Time for last 1,000,000: 1s. Last read position: chr11:72,098,370
INFO 2026-06-08 08:51:29 MarkDuplicates Tracking 547028 as yet unmatched pairs. 18454 records in RAM.
INFO 2026-06-08 08:51:31 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:28s. Time for last 1,000,000: 1s. Last read position: chr11:74,949,289
INFO 2026-06-08 08:51:31 MarkDuplicates Tracking 544097 as yet unmatched pairs. 15519 records in RAM.
INFO 2026-06-08 08:51:32 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr11:77,122,590
INFO 2026-06-08 08:51:32 MarkDuplicates Tracking 542218 as yet unmatched pairs. 13625 records in RAM.
INFO 2026-06-08 08:51:34 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:31s. Time for last 1,000,000: 1s. Last read position: chr11:93,794,919
INFO 2026-06-08 08:51:34 MarkDuplicates Tracking 540573 as yet unmatched pairs. 11969 records in RAM.
INFO 2026-06-08 08:51:35 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 1s. Last read position: chr11:108,486,258
INFO 2026-06-08 08:51:35 MarkDuplicates Tracking 538722 as yet unmatched pairs. 10107 records in RAM.
INFO 2026-06-08 08:51:37 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr11:117,986,418
INFO 2026-06-08 08:51:37 MarkDuplicates Tracking 536673 as yet unmatched pairs. 8048 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 1s. Last read position: chr11:119,045,588
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 535383 as yet unmatched pairs. 6756 records in RAM.
INFO 2026-06-08 08:51:40 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr11:123,057,709
INFO 2026-06-08 08:51:40 MarkDuplicates Tracking 537064 as yet unmatched pairs. 8434 records in RAM.
INFO 2026-06-08 08:51:42 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 2s. Last read position: chr11:126,402,976
INFO 2026-06-08 08:51:42 MarkDuplicates Tracking 531816 as yet unmatched pairs. 3186 records in RAM.
INFO 2026-06-08 08:51:44 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:41s. Time for last 1,000,000: 1s. Last read position: chr11:130,907,992
INFO 2026-06-08 08:51:44 MarkDuplicates Tracking 529149 as yet unmatched pairs. 512 records in RAM.
INFO 2026-06-08 08:51:46 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:43s. Time for last 1,000,000: 2s. Last read position: chr12:3,678,971
INFO 2026-06-08 08:51:46 MarkDuplicates Tracking 527284 as yet unmatched pairs. 61156 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr12:6,517,470
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 525376 as yet unmatched pairs. 59243 records in RAM.
INFO 2026-06-08 08:51:50 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 2s. Last read position: chr12:6,936,306
INFO 2026-06-08 08:51:50 MarkDuplicates Tracking 524534 as yet unmatched pairs. 58398 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr12:8,946,251
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 521858 as yet unmatched pairs. 55720 records in RAM.
INFO 2026-06-08 08:51:53 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 1s. Last read position: chr12:12,909,060
INFO 2026-06-08 08:51:53 MarkDuplicates Tracking 522512 as yet unmatched pairs. 56364 records in RAM.
INFO 2026-06-08 08:51:55 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr12:26,631,977
INFO 2026-06-08 08:51:55 MarkDuplicates Tracking 518531 as yet unmatched pairs. 52377 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr12:45,348,524
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 516728 as yet unmatched pairs. 50568 records in RAM.
INFO 2026-06-08 08:51:58 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:55s. Time for last 1,000,000: 1s. Last read position: chr12:49,022,123
INFO 2026-06-08 08:51:58 MarkDuplicates Tracking 514595 as yet unmatched pairs. 48431 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:57s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,860
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 515733 as yet unmatched pairs. 49565 records in RAM.
INFO 2026-06-08 08:52:01 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr12:50,200,837
INFO 2026-06-08 08:52:01 MarkDuplicates Tracking 511344 as yet unmatched pairs. 45175 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr12:52,056,048
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 510651 as yet unmatched pairs. 44478 records in RAM.
INFO 2026-06-08 08:52:04 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr12:52,949,561
INFO 2026-06-08 08:52:04 MarkDuplicates Tracking 510723 as yet unmatched pairs. 44541 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr12:53,443,501
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 508141 as yet unmatched pairs. 41958 records in RAM.
INFO 2026-06-08 08:52:07 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:12:04s. Time for last 1,000,000: 1s. Last read position: chr12:54,283,832
INFO 2026-06-08 08:52:07 MarkDuplicates Tracking 509655 as yet unmatched pairs. 43472 records in RAM.
INFO 2026-06-08 08:52:09 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:12:06s. Time for last 1,000,000: 1s. Last read position: chr12:56,101,278
INFO 2026-06-08 08:52:09 MarkDuplicates Tracking 503242 as yet unmatched pairs. 37055 records in RAM.
INFO 2026-06-08 08:52:11 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr12:56,600,306
INFO 2026-06-08 08:52:11 MarkDuplicates Tracking 500607 as yet unmatched pairs. 34416 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr12:57,096,548
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 500468 as yet unmatched pairs. 34276 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr12:57,198,660
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 497050 as yet unmatched pairs. 30854 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:12:14s. Time for last 1,000,000: 2s. Last read position: chr12:57,720,814
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 495254 as yet unmatched pairs. 29056 records in RAM.
INFO 2026-06-08 08:52:19 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr12:68,839,397
INFO 2026-06-08 08:52:19 MarkDuplicates Tracking 493577 as yet unmatched pairs. 27373 records in RAM.
INFO 2026-06-08 08:52:20 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr12:76,392,611
INFO 2026-06-08 08:52:20 MarkDuplicates Tracking 491615 as yet unmatched pairs. 25407 records in RAM.
INFO 2026-06-08 08:52:22 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 1s. Last read position: chr12:95,141,444
INFO 2026-06-08 08:52:22 MarkDuplicates Tracking 489799 as yet unmatched pairs. 23585 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr12:102,402,440
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 487919 as yet unmatched pairs. 21704 records in RAM.
INFO 2026-06-08 08:52:25 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:12:22s. Time for last 1,000,000: 1s. Last read position: chr12:105,199,510
INFO 2026-06-08 08:52:25 MarkDuplicates Tracking 486305 as yet unmatched pairs. 20083 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr12:109,996,173
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 484406 as yet unmatched pairs. 18176 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:25s. Time for last 1,000,000: 1s. Last read position: chr12:112,022,163
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 484141 as yet unmatched pairs. 17908 records in RAM.
INFO 2026-06-08 08:52:29 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 1s. Last read position: chr12:113,177,056
INFO 2026-06-08 08:52:29 MarkDuplicates Tracking 480935 as yet unmatched pairs. 14702 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr12:119,783,909
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 478829 as yet unmatched pairs. 12591 records in RAM.
INFO 2026-06-08 08:52:33 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr12:120,438,221
INFO 2026-06-08 08:52:33 MarkDuplicates Tracking 481621 as yet unmatched pairs. 15377 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr12:121,822,962
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 475408 as yet unmatched pairs. 9163 records in RAM.
INFO 2026-06-08 08:52:36 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr12:122,997,486
INFO 2026-06-08 08:52:36 MarkDuplicates Tracking 472980 as yet unmatched pairs. 6723 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr12:124,363,770
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 471349 as yet unmatched pairs. 5084 records in RAM.
INFO 2026-06-08 08:52:39 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr12:131,961,194
INFO 2026-06-08 08:52:39 MarkDuplicates Tracking 469292 as yet unmatched pairs. 3020 records in RAM.
INFO 2026-06-08 08:52:41 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr12:132,798,346
INFO 2026-06-08 08:52:41 MarkDuplicates Tracking 467159 as yet unmatched pairs. 886 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr13:24,434,860
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 465407 as yet unmatched pairs. 14627 records in RAM.
INFO 2026-06-08 08:52:44 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr13:32,407,722
INFO 2026-06-08 08:52:44 MarkDuplicates Tracking 463163 as yet unmatched pairs. 12379 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 2s. Last read position: chr13:44,436,524
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 461616 as yet unmatched pairs. 10826 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:45s. Time for last 1,000,000: 1s. Last read position: chr13:52,024,562
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 459650 as yet unmatched pairs. 8851 records in RAM.
INFO 2026-06-08 08:52:49 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr13:79,481,434
INFO 2026-06-08 08:52:49 MarkDuplicates Tracking 458020 as yet unmatched pairs. 7220 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:48s. Time for last 1,000,000: 1s. Last read position: chr13:106,567,795
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 456032 as yet unmatched pairs. 5232 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:50s. Time for last 1,000,000: 1s. Last read position: chr13:110,430,400
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 454828 as yet unmatched pairs. 4027 records in RAM.
INFO 2026-06-08 08:52:54 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr13:113,355,436
INFO 2026-06-08 08:52:54 MarkDuplicates Tracking 451619 as yet unmatched pairs. 810 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 1s. Last read position: chr14:21,233,986
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 452125 as yet unmatched pairs. 35525 records in RAM.
INFO 2026-06-08 08:52:57 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr14:23,034,696
INFO 2026-06-08 08:52:57 MarkDuplicates Tracking 448228 as yet unmatched pairs. 31623 records in RAM.
INFO 2026-06-08 08:52:59 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 1s. Last read position: chr14:24,184,306
INFO 2026-06-08 08:52:59 MarkDuplicates Tracking 445937 as yet unmatched pairs. 29328 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr14:32,154,832
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 443765 as yet unmatched pairs. 27154 records in RAM.
INFO 2026-06-08 08:53:02 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 1s. Last read position: chr14:49,618,992
INFO 2026-06-08 08:53:02 MarkDuplicates Tracking 442665 as yet unmatched pairs. 26042 records in RAM.
INFO 2026-06-08 08:53:04 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr14:55,142,713
INFO 2026-06-08 08:53:04 MarkDuplicates Tracking 442215 as yet unmatched pairs. 25586 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 1s. Last read position: chr14:64,168,914
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 438365 as yet unmatched pairs. 21731 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:13:04s. Time for last 1,000,000: 1s. Last read position: chr14:68,874,843
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 437460 as yet unmatched pairs. 20824 records in RAM.
INFO 2026-06-08 08:53:08 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr14:73,522,867
INFO 2026-06-08 08:53:08 MarkDuplicates Tracking 434661 as yet unmatched pairs. 18007 records in RAM.
INFO 2026-06-08 08:53:10 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 1s. Last read position: chr14:75,280,118
INFO 2026-06-08 08:53:10 MarkDuplicates Tracking 435511 as yet unmatched pairs. 18854 records in RAM.
INFO 2026-06-08 08:53:12 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 2s. Last read position: chr14:90,401,346
INFO 2026-06-08 08:53:12 MarkDuplicates Tracking 432472 as yet unmatched pairs. 15803 records in RAM.
INFO 2026-06-08 08:53:14 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:13:12s. Time for last 1,000,000: 2s. Last read position: chr14:94,566,989
INFO 2026-06-08 08:53:14 MarkDuplicates Tracking 428890 as yet unmatched pairs. 12219 records in RAM.
INFO 2026-06-08 08:53:16 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr14:102,001,241
INFO 2026-06-08 08:53:16 MarkDuplicates Tracking 427713 as yet unmatched pairs. 11031 records in RAM.
INFO 2026-06-08 08:53:18 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr14:102,983,612
INFO 2026-06-08 08:53:18 MarkDuplicates Tracking 425751 as yet unmatched pairs. 9069 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr14:104,883,484
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 423634 as yet unmatched pairs. 6951 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr14:105,587,231
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 422860 as yet unmatched pairs. 6171 records in RAM.
INFO 2026-06-08 08:53:22 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:13:19s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,384
INFO 2026-06-08 08:53:22 MarkDuplicates Tracking 426765 as yet unmatched pairs. 10076 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,892
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 426147 as yet unmatched pairs. 9457 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr14:105,926,692
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 416801 as yet unmatched pairs. 111 records in RAM.
INFO 2026-06-08 08:53:27 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:13:24s. Time for last 1,000,000: 1s. Last read position: chr15:30,372,977
INFO 2026-06-08 08:53:27 MarkDuplicates Tracking 415256 as yet unmatched pairs. 30478 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr15:34,531,323
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 413548 as yet unmatched pairs. 28770 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 1s. Last read position: chr15:40,383,030
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 411770 as yet unmatched pairs. 26990 records in RAM.
INFO 2026-06-08 08:53:31 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr15:42,211,706
INFO 2026-06-08 08:53:31 MarkDuplicates Tracking 410072 as yet unmatched pairs. 25292 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:30s. Time for last 1,000,000: 1s. Last read position: chr15:43,768,558
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 409893 as yet unmatched pairs. 25112 records in RAM.
INFO 2026-06-08 08:53:34 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 1s. Last read position: chr15:45,431,044
INFO 2026-06-08 08:53:34 MarkDuplicates Tracking 406745 as yet unmatched pairs. 21963 records in RAM.
INFO 2026-06-08 08:53:36 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr15:52,557,100
INFO 2026-06-08 08:53:36 MarkDuplicates Tracking 405633 as yet unmatched pairs. 20846 records in RAM.
INFO 2026-06-08 08:53:38 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:35s. Time for last 1,000,000: 1s. Last read position: chr15:60,349,111
INFO 2026-06-08 08:53:38 MarkDuplicates Tracking 403567 as yet unmatched pairs. 18778 records in RAM.
INFO 2026-06-08 08:53:40 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:37s. Time for last 1,000,000: 2s. Last read position: chr15:63,649,780
INFO 2026-06-08 08:53:40 MarkDuplicates Tracking 400699 as yet unmatched pairs. 15894 records in RAM.
INFO 2026-06-08 08:53:42 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr15:66,500,069
INFO 2026-06-08 08:53:42 MarkDuplicates Tracking 401341 as yet unmatched pairs. 16535 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr15:72,199,675
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 398792 as yet unmatched pairs. 13982 records in RAM.
INFO 2026-06-08 08:53:45 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 1s. Last read position: chr15:74,035,252
INFO 2026-06-08 08:53:45 MarkDuplicates Tracking 397395 as yet unmatched pairs. 12582 records in RAM.
INFO 2026-06-08 08:53:47 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr15:75,687,636
INFO 2026-06-08 08:53:47 MarkDuplicates Tracking 392890 as yet unmatched pairs. 8077 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr15:81,323,666
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 390849 as yet unmatched pairs. 6034 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr15:88,856,383
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 389244 as yet unmatched pairs. 4427 records in RAM.
INFO 2026-06-08 08:53:51 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 1s. Last read position: chr15:90,265,749
INFO 2026-06-08 08:53:51 MarkDuplicates Tracking 387620 as yet unmatched pairs. 2802 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr15:99,712,578
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 385632 as yet unmatched pairs. 809 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr16:552,366
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 384196 as yet unmatched pairs. 55336 records in RAM.
INFO 2026-06-08 08:53:57 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 2s. Last read position: chr16:1,446,630
INFO 2026-06-08 08:53:57 MarkDuplicates Tracking 381827 as yet unmatched pairs. 52963 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 2s. Last read position: chr16:2,061,856
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 379097 as yet unmatched pairs. 50233 records in RAM.
INFO 2026-06-08 08:54:01 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 1s. Last read position: chr16:2,514,143
INFO 2026-06-08 08:54:01 MarkDuplicates Tracking 378242 as yet unmatched pairs. 49374 records in RAM.
INFO 2026-06-08 08:54:03 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 1s. Last read position: chr16:2,767,258
INFO 2026-06-08 08:54:03 MarkDuplicates Tracking 376106 as yet unmatched pairs. 47233 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr16:3,289,504
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 373238 as yet unmatched pairs. 44364 records in RAM.
INFO 2026-06-08 08:54:06 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:14:03s. Time for last 1,000,000: 1s. Last read position: chr16:4,875,234
INFO 2026-06-08 08:54:06 MarkDuplicates Tracking 371026 as yet unmatched pairs. 42146 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr16:14,251,898
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 369273 as yet unmatched pairs. 40387 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:14:06s. Time for last 1,000,000: 1s. Last read position: chr16:15,070,077
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 368106 as yet unmatched pairs. 39219 records in RAM.
INFO 2026-06-08 08:54:10 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr16:16,320,038
INFO 2026-06-08 08:54:10 MarkDuplicates Tracking 367133 as yet unmatched pairs. 38242 records in RAM.
INFO 2026-06-08 08:54:11 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:14:08s. Time for last 1,000,000: 1s. Last read position: chr16:18,350,640
INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 367494 as yet unmatched pairs. 38603 records in RAM.
INFO 2026-06-08 08:54:12 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr16:18,834,230
INFO 2026-06-08 08:54:12 MarkDuplicates Tracking 365520 as yet unmatched pairs. 36629 records in RAM.
INFO 2026-06-08 08:54:14 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 1s. Last read position: chr16:21,404,237
INFO 2026-06-08 08:54:14 MarkDuplicates Tracking 364190 as yet unmatched pairs. 35295 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:14:13s. Time for last 1,000,000: 1s. Last read position: chr16:21,837,680
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 363592 as yet unmatched pairs. 34697 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 1s. Last read position: chr16:22,534,582
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 363522 as yet unmatched pairs. 34625 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 1s. Last read position: chr16:27,362,643
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 361757 as yet unmatched pairs. 32857 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chr16:28,732,049
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 359543 as yet unmatched pairs. 30642 records in RAM.
INFO 2026-06-08 08:54:21 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chr16:29,444,434
INFO 2026-06-08 08:54:21 MarkDuplicates Tracking 359376 as yet unmatched pairs. 30475 records in RAM.
INFO 2026-06-08 08:54:23 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chr16:29,817,237
INFO 2026-06-08 08:54:23 MarkDuplicates Tracking 357066 as yet unmatched pairs. 28164 records in RAM.
INFO 2026-06-08 08:54:25 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chr16:30,116,650
INFO 2026-06-08 08:54:25 MarkDuplicates Tracking 355352 as yet unmatched pairs. 26450 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chr16:30,604,789
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 353547 as yet unmatched pairs. 24641 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr16:31,090,775
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 351674 as yet unmatched pairs. 22759 records in RAM.
INFO 2026-06-08 08:54:30 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chr16:31,496,949
INFO 2026-06-08 08:54:30 MarkDuplicates Tracking 349904 as yet unmatched pairs. 20989 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:28s. Time for last 1,000,000: 1s. Last read position: chr16:55,485,332
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 348708 as yet unmatched pairs. 19789 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chr16:57,562,405
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 345950 as yet unmatched pairs. 17029 records in RAM.
INFO 2026-06-08 08:54:34 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chr16:66,943,221
INFO 2026-06-08 08:54:34 MarkDuplicates Tracking 344091 as yet unmatched pairs. 15163 records in RAM.
INFO 2026-06-08 08:54:36 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chr16:67,942,704
INFO 2026-06-08 08:54:36 MarkDuplicates Tracking 341836 as yet unmatched pairs. 12904 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chr16:69,937,147
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 340095 as yet unmatched pairs. 11156 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 1s. Last read position: chr16:72,788,484
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 338305 as yet unmatched pairs. 9365 records in RAM.
INFO 2026-06-08 08:54:40 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: chr16:79,598,785
INFO 2026-06-08 08:54:40 MarkDuplicates Tracking 337142 as yet unmatched pairs. 8197 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: chr16:85,805,733
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 335751 as yet unmatched pairs. 6803 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:42s. Time for last 1,000,000: 2s. Last read position: chr16:88,716,193
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 332565 as yet unmatched pairs. 3615 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:44s. Time for last 1,000,000: 1s. Last read position: chr16:89,561,708
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 333418 as yet unmatched pairs. 4466 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 2s. Last read position: chr17:1,345,385
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 330798 as yet unmatched pairs. 124030 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 1s. Last read position: chr17:1,733,879
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 326401 as yet unmatched pairs. 119633 records in RAM.
INFO 2026-06-08 08:54:53 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:50s. Time for last 1,000,000: 1s. Last read position: chr17:4,006,918
INFO 2026-06-08 08:54:53 MarkDuplicates Tracking 324378 as yet unmatched pairs. 117604 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:52s. Time for last 1,000,000: 1s. Last read position: chr17:4,945,856
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 325676 as yet unmatched pairs. 118901 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 1s. Last read position: chr17:7,222,182
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 320686 as yet unmatched pairs. 113911 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 1s. Last read position: chr17:7,496,275
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 318646 as yet unmatched pairs. 111871 records in RAM.
INFO 2026-06-08 08:54:59 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:56s. Time for last 1,000,000: 1s. Last read position: chr17:7,845,566
INFO 2026-06-08 08:54:59 MarkDuplicates Tracking 317913 as yet unmatched pairs. 111135 records in RAM.
INFO 2026-06-08 08:55:01 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:58s. Time for last 1,000,000: 1s. Last read position: chr17:8,382,179
INFO 2026-06-08 08:55:01 MarkDuplicates Tracking 316017 as yet unmatched pairs. 109235 records in RAM.
INFO 2026-06-08 08:55:02 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:15:00s. Time for last 1,000,000: 1s. Last read position: chr17:16,382,190
INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 315902 as yet unmatched pairs. 109120 records in RAM.
INFO 2026-06-08 08:55:04 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 1s. Last read position: chr17:18,245,062
INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 312067 as yet unmatched pairs. 105285 records in RAM.
INFO 2026-06-08 08:55:05 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:15:03s. Time for last 1,000,000: 1s. Last read position: chr17:27,592,594
INFO 2026-06-08 08:55:05 MarkDuplicates Tracking 309421 as yet unmatched pairs. 102639 records in RAM.
INFO 2026-06-08 08:55:07 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 1s. Last read position: chr17:28,749,028
INFO 2026-06-08 08:55:07 MarkDuplicates Tracking 308236 as yet unmatched pairs. 101446 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 1s. Last read position: chr17:31,305,382
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 305768 as yet unmatched pairs. 98977 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:15:08s. Time for last 1,000,000: 2s. Last read position: chr17:35,844,950
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 304022 as yet unmatched pairs. 97229 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:15:10s. Time for last 1,000,000: 1s. Last read position: chr17:38,256,896
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 302989 as yet unmatched pairs. 96196 records in RAM.
INFO 2026-06-08 08:55:14 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:15:12s. Time for last 1,000,000: 1s. Last read position: chr17:39,462,261
INFO 2026-06-08 08:55:14 MarkDuplicates Tracking 300689 as yet unmatched pairs. 93895 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 1s. Last read position: chr17:39,917,214
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 298772 as yet unmatched pairs. 91972 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 1s. Last read position: chr17:41,524,845
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 299090 as yet unmatched pairs. 92289 records in RAM.
INFO 2026-06-08 08:55:19 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 1s. Last read position: chr17:42,121,113
INFO 2026-06-08 08:55:19 MarkDuplicates Tracking 294766 as yet unmatched pairs. 87965 records in RAM.
INFO 2026-06-08 08:55:21 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:15:18s. Time for last 1,000,000: 1s. Last read position: chr17:42,998,807
INFO 2026-06-08 08:55:21 MarkDuplicates Tracking 294014 as yet unmatched pairs. 87209 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:15:20s. Time for last 1,000,000: 1s. Last read position: chr17:44,352,461
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 291159 as yet unmatched pairs. 84353 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 1s. Last read position: chr17:46,425,568
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 288937 as yet unmatched pairs. 82131 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:15:23s. Time for last 1,000,000: 1s. Last read position: chr17:48,550,743
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 287553 as yet unmatched pairs. 80746 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:15:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,551
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 294551 as yet unmatched pairs. 87744 records in RAM.
INFO 2026-06-08 08:55:29 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:15:26s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,490
INFO 2026-06-08 08:55:29 MarkDuplicates Tracking 300052 as yet unmatched pairs. 93245 records in RAM.
INFO 2026-06-08 08:55:31 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,014
INFO 2026-06-08 08:55:31 MarkDuplicates Tracking 351008 as yet unmatched pairs. 144199 records in RAM.
INFO 2026-06-08 08:55:33 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:15:30s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,527
INFO 2026-06-08 08:55:33 MarkDuplicates Tracking 350570 as yet unmatched pairs. 143759 records in RAM.
INFO 2026-06-08 08:55:35 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:15:32s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,095
INFO 2026-06-08 08:55:35 MarkDuplicates Tracking 378771 as yet unmatched pairs. 171960 records in RAM.
INFO 2026-06-08 08:55:37 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 2s. Last read position: chr17:50,188,623
INFO 2026-06-08 08:55:37 MarkDuplicates Tracking 346700 as yet unmatched pairs. 139889 records in RAM.
INFO 2026-06-08 08:55:39 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:15:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,980
INFO 2026-06-08 08:55:39 MarkDuplicates Tracking 349393 as yet unmatched pairs. 142581 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,430
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 341004 as yet unmatched pairs. 134192 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:15:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,689
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 382168 as yet unmatched pairs. 175356 records in RAM.
INFO 2026-06-08 08:55:45 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:15:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,041
INFO 2026-06-08 08:55:45 MarkDuplicates Tracking 369218 as yet unmatched pairs. 162403 records in RAM.
INFO 2026-06-08 08:55:47 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,554
INFO 2026-06-08 08:55:47 MarkDuplicates Tracking 320674 as yet unmatched pairs. 113853 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:15:46s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,469
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 314761 as yet unmatched pairs. 107940 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 130s. Last read position: chr17:50,192,494
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 326728 as yet unmatched pairs. 119907 records in RAM.
INFO 2026-06-08 08:58:01 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,835
INFO 2026-06-08 08:58:01 MarkDuplicates Tracking 342530 as yet unmatched pairs. 135709 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,193,977
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 356135 as yet unmatched pairs. 149313 records in RAM.
INFO 2026-06-08 08:58:04 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,170
INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 380993 as yet unmatched pairs. 174170 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,603
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 319110 as yet unmatched pairs. 112286 records in RAM.
INFO 2026-06-08 08:58:08 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,089
INFO 2026-06-08 08:58:08 MarkDuplicates Tracking 320292 as yet unmatched pairs. 113465 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,590
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 322453 as yet unmatched pairs. 115624 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:18:08s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,154
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 310467 as yet unmatched pairs. 103632 records in RAM.
INFO 2026-06-08 08:58:13 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:18:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,336
INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 338194 as yet unmatched pairs. 131359 records in RAM.
INFO 2026-06-08 08:58:15 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:18:12s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,019
INFO 2026-06-08 08:58:15 MarkDuplicates Tracking 338652 as yet unmatched pairs. 131814 records in RAM.
INFO 2026-06-08 08:58:17 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:18:14s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,759
INFO 2026-06-08 08:58:17 MarkDuplicates Tracking 303195 as yet unmatched pairs. 96352 records in RAM.
INFO 2026-06-08 08:58:18 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,243
INFO 2026-06-08 08:58:18 MarkDuplicates Tracking 285380 as yet unmatched pairs. 78535 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:18:17s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,576
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 271399 as yet unmatched pairs. 64554 records in RAM.
INFO 2026-06-08 08:58:22 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:18:19s. Time for last 1,000,000: 1s. Last read position: chr17:50,388,060
INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 235897 as yet unmatched pairs. 29051 records in RAM.
INFO 2026-06-08 08:58:23 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:18:21s. Time for last 1,000,000: 1s. Last read position: chr17:57,257,122
INFO 2026-06-08 08:58:23 MarkDuplicates Tracking 233925 as yet unmatched pairs. 27079 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr17:59,682,717
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 234023 as yet unmatched pairs. 27175 records in RAM.
INFO 2026-06-08 08:58:27 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr17:63,746,813
INFO 2026-06-08 08:58:27 MarkDuplicates Tracking 230060 as yet unmatched pairs. 23204 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:18:25s. Time for last 1,000,000: 1s. Last read position: chr17:67,854,497
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 227691 as yet unmatched pairs. 20832 records in RAM.
INFO 2026-06-08 08:58:30 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr17:74,204,178
INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 233482 as yet unmatched pairs. 26623 records in RAM.
INFO 2026-06-08 08:58:31 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr17:75,543,439
INFO 2026-06-08 08:58:31 MarkDuplicates Tracking 224720 as yet unmatched pairs. 17860 records in RAM.
INFO 2026-06-08 08:58:33 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr17:75,876,393
INFO 2026-06-08 08:58:33 MarkDuplicates Tracking 222030 as yet unmatched pairs. 15168 records in RAM.
INFO 2026-06-08 08:58:35 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:18:32s. Time for last 1,000,000: 1s. Last read position: chr17:77,320,315
INFO 2026-06-08 08:58:35 MarkDuplicates Tracking 219920 as yet unmatched pairs. 13054 records in RAM.
INFO 2026-06-08 08:58:37 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:18:34s. Time for last 1,000,000: 2s. Last read position: chr17:78,993,516
INFO 2026-06-08 08:58:37 MarkDuplicates Tracking 217867 as yet unmatched pairs. 10997 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:18:36s. Time for last 1,000,000: 1s. Last read position: chr17:80,347,349
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 216098 as yet unmatched pairs. 9227 records in RAM.
INFO 2026-06-08 08:58:40 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:18:37s. Time for last 1,000,000: 1s. Last read position: chr17:81,511,433
INFO 2026-06-08 08:58:40 MarkDuplicates Tracking 216965 as yet unmatched pairs. 10092 records in RAM.
INFO 2026-06-08 08:58:42 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:18:39s. Time for last 1,000,000: 1s. Last read position: chr17:81,855,171
INFO 2026-06-08 08:58:42 MarkDuplicates Tracking 216377 as yet unmatched pairs. 9500 records in RAM.
INFO 2026-06-08 08:58:44 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr17:82,082,147
INFO 2026-06-08 08:58:44 MarkDuplicates Tracking 210297 as yet unmatched pairs. 3417 records in RAM.
INFO 2026-06-08 08:58:45 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:18:42s. Time for last 1,000,000: 1s. Last read position: chr17:82,630,879
INFO 2026-06-08 08:58:45 MarkDuplicates Tracking 207849 as yet unmatched pairs. 964 records in RAM.
INFO 2026-06-08 08:58:47 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:18:44s. Time for last 1,000,000: 1s. Last read position: chr18:9,208,763
INFO 2026-06-08 08:58:47 MarkDuplicates Tracking 205684 as yet unmatched pairs. 8989 records in RAM.
INFO 2026-06-08 08:58:49 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:18:46s. Time for last 1,000,000: 2s. Last read position: chr18:26,035,041
INFO 2026-06-08 08:58:49 MarkDuplicates Tracking 203653 as yet unmatched pairs. 6955 records in RAM.
INFO 2026-06-08 08:58:50 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr18:46,089,606
INFO 2026-06-08 08:58:50 MarkDuplicates Tracking 202568 as yet unmatched pairs. 5869 records in RAM.
INFO 2026-06-08 08:58:51 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr18:57,436,368
INFO 2026-06-08 08:58:51 MarkDuplicates Tracking 199804 as yet unmatched pairs. 3104 records in RAM.
INFO 2026-06-08 08:58:53 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr18:74,513,611
INFO 2026-06-08 08:58:53 MarkDuplicates Tracking 198024 as yet unmatched pairs. 1321 records in RAM.
INFO 2026-06-08 08:58:55 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 2s. Last read position: chr19:582,526
INFO 2026-06-08 08:58:55 MarkDuplicates Tracking 206088 as yet unmatched pairs. 104742 records in RAM.
INFO 2026-06-08 08:58:57 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:18:54s. Time for last 1,000,000: 1s. Last read position: chr19:1,011,767
INFO 2026-06-08 08:58:57 MarkDuplicates Tracking 194477 as yet unmatched pairs. 93131 records in RAM.
INFO 2026-06-08 08:58:58 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:18:56s. Time for last 1,000,000: 1s. Last read position: chr19:1,295,570
INFO 2026-06-08 08:58:58 MarkDuplicates Tracking 191282 as yet unmatched pairs. 89936 records in RAM.
INFO 2026-06-08 08:59:00 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 1s. Last read position: chr19:1,827,661
INFO 2026-06-08 08:59:00 MarkDuplicates Tracking 189339 as yet unmatched pairs. 87992 records in RAM.
INFO 2026-06-08 08:59:02 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:18:59s. Time for last 1,000,000: 1s. Last read position: chr19:2,272,970
INFO 2026-06-08 08:59:02 MarkDuplicates Tracking 187208 as yet unmatched pairs. 85861 records in RAM.
INFO 2026-06-08 08:59:04 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:19:01s. Time for last 1,000,000: 2s. Last read position: chr19:3,578,043
INFO 2026-06-08 08:59:04 MarkDuplicates Tracking 185403 as yet unmatched pairs. 84056 records in RAM.
INFO 2026-06-08 08:59:06 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 2s. Last read position: chr19:4,501,965
INFO 2026-06-08 08:59:06 MarkDuplicates Tracking 182906 as yet unmatched pairs. 81558 records in RAM.
INFO 2026-06-08 08:59:08 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:19:05s. Time for last 1,000,000: 1s. Last read position: chr19:5,699,026
INFO 2026-06-08 08:59:08 MarkDuplicates Tracking 180919 as yet unmatched pairs. 79571 records in RAM.
INFO 2026-06-08 08:59:09 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:19:07s. Time for last 1,000,000: 1s. Last read position: chr19:6,420,135
INFO 2026-06-08 08:59:09 MarkDuplicates Tracking 180394 as yet unmatched pairs. 79045 records in RAM.
INFO 2026-06-08 08:59:11 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr19:7,605,244
INFO 2026-06-08 08:59:11 MarkDuplicates Tracking 176793 as yet unmatched pairs. 75443 records in RAM.
INFO 2026-06-08 08:59:13 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr19:9,155,975
INFO 2026-06-08 08:59:13 MarkDuplicates Tracking 174654 as yet unmatched pairs. 73303 records in RAM.
INFO 2026-06-08 08:59:14 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr19:10,393,330
INFO 2026-06-08 08:59:14 MarkDuplicates Tracking 172973 as yet unmatched pairs. 71621 records in RAM.
INFO 2026-06-08 08:59:16 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:19:13s. Time for last 1,000,000: 1s. Last read position: chr19:11,026,341
INFO 2026-06-08 08:59:16 MarkDuplicates Tracking 170717 as yet unmatched pairs. 69364 records in RAM.
INFO 2026-06-08 08:59:18 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:19:15s. Time for last 1,000,000: 1s. Last read position: chr19:11,666,578
INFO 2026-06-08 08:59:18 MarkDuplicates Tracking 168712 as yet unmatched pairs. 67359 records in RAM.
INFO 2026-06-08 08:59:19 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr19:12,940,249
INFO 2026-06-08 08:59:19 MarkDuplicates Tracking 168094 as yet unmatched pairs. 66741 records in RAM.
INFO 2026-06-08 08:59:21 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr19:14,097,617
INFO 2026-06-08 08:59:21 MarkDuplicates Tracking 165757 as yet unmatched pairs. 64403 records in RAM.
INFO 2026-06-08 08:59:22 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr19:14,516,904
INFO 2026-06-08 08:59:22 MarkDuplicates Tracking 167848 as yet unmatched pairs. 66494 records in RAM.
INFO 2026-06-08 08:59:24 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:19:21s. Time for last 1,000,000: 1s. Last read position: chr19:15,244,269
INFO 2026-06-08 08:59:24 MarkDuplicates Tracking 162817 as yet unmatched pairs. 61463 records in RAM.
INFO 2026-06-08 08:59:26 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 2s. Last read position: chr19:16,519,094
INFO 2026-06-08 08:59:26 MarkDuplicates Tracking 158781 as yet unmatched pairs. 57426 records in RAM.
INFO 2026-06-08 08:59:29 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:19:26s. Time for last 1,000,000: 2s. Last read position: chr19:17,727,421
INFO 2026-06-08 08:59:29 MarkDuplicates Tracking 157134 as yet unmatched pairs. 55776 records in RAM.
INFO 2026-06-08 08:59:30 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:19:28s. Time for last 1,000,000: 1s. Last read position: chr19:18,386,375
INFO 2026-06-08 08:59:30 MarkDuplicates Tracking 157600 as yet unmatched pairs. 56239 records in RAM.
INFO 2026-06-08 08:59:32 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr19:18,995,028
INFO 2026-06-08 08:59:32 MarkDuplicates Tracking 152334 as yet unmatched pairs. 50972 records in RAM.
INFO 2026-06-08 08:59:34 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr19:32,692,296
INFO 2026-06-08 08:59:34 MarkDuplicates Tracking 150728 as yet unmatched pairs. 49362 records in RAM.
INFO 2026-06-08 08:59:35 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:19:32s. Time for last 1,000,000: 1s. Last read position: chr19:35,250,409
INFO 2026-06-08 08:59:35 MarkDuplicates Tracking 150895 as yet unmatched pairs. 49529 records in RAM.
INFO 2026-06-08 08:59:37 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:19:34s. Time for last 1,000,000: 1s. Last read position: chr19:36,089,066
INFO 2026-06-08 08:59:37 MarkDuplicates Tracking 146051 as yet unmatched pairs. 44685 records in RAM.
INFO 2026-06-08 08:59:38 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr19:38,700,686
INFO 2026-06-08 08:59:38 MarkDuplicates Tracking 144273 as yet unmatched pairs. 42902 records in RAM.
INFO 2026-06-08 08:59:40 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:19:37s. Time for last 1,000,000: 1s. Last read position: chr19:39,388,837
INFO 2026-06-08 08:59:40 MarkDuplicates Tracking 142297 as yet unmatched pairs. 40923 records in RAM.
INFO 2026-06-08 08:59:41 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr19:39,863,337
INFO 2026-06-08 08:59:41 MarkDuplicates Tracking 141296 as yet unmatched pairs. 39922 records in RAM.
INFO 2026-06-08 08:59:43 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr19:39,885,709
INFO 2026-06-08 08:59:43 MarkDuplicates Tracking 143252 as yet unmatched pairs. 41877 records in RAM.
INFO 2026-06-08 08:59:44 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:19:42s. Time for last 1,000,000: 1s. Last read position: chr19:39,894,064
INFO 2026-06-08 08:59:44 MarkDuplicates Tracking 141920 as yet unmatched pairs. 40542 records in RAM.
INFO 2026-06-08 08:59:46 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:19:44s. Time for last 1,000,000: 1s. Last read position: chr19:39,927,602
INFO 2026-06-08 08:59:46 MarkDuplicates Tracking 137103 as yet unmatched pairs. 35725 records in RAM.
INFO 2026-06-08 08:59:48 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr19:40,786,707
INFO 2026-06-08 08:59:48 MarkDuplicates Tracking 133286 as yet unmatched pairs. 31908 records in RAM.
INFO 2026-06-08 08:59:50 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:19:47s. Time for last 1,000,000: 1s. Last read position: chr19:41,720,192
INFO 2026-06-08 08:59:50 MarkDuplicates Tracking 132665 as yet unmatched pairs. 31286 records in RAM.
INFO 2026-06-08 08:59:52 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:19:49s. Time for last 1,000,000: 1s. Last read position: chr19:42,271,916
INFO 2026-06-08 08:59:52 MarkDuplicates Tracking 130265 as yet unmatched pairs. 28886 records in RAM.
INFO 2026-06-08 08:59:53 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:19:51s. Time for last 1,000,000: 1s. Last read position: chr19:43,526,274
INFO 2026-06-08 08:59:53 MarkDuplicates Tracking 128614 as yet unmatched pairs. 27235 records in RAM.
INFO 2026-06-08 08:59:55 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:19:53s. Time for last 1,000,000: 2s. Last read position: chr19:44,909,013
INFO 2026-06-08 08:59:55 MarkDuplicates Tracking 127026 as yet unmatched pairs. 25647 records in RAM.
INFO 2026-06-08 08:59:57 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr19:45,713,390
INFO 2026-06-08 08:59:57 MarkDuplicates Tracking 123517 as yet unmatched pairs. 22136 records in RAM.
INFO 2026-06-08 08:59:59 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr19:47,066,817
INFO 2026-06-08 08:59:59 MarkDuplicates Tracking 121756 as yet unmatched pairs. 20372 records in RAM.
INFO 2026-06-08 09:00:00 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:19:58s. Time for last 1,000,000: 1s. Last read position: chr19:48,478,459
INFO 2026-06-08 09:00:00 MarkDuplicates Tracking 119498 as yet unmatched pairs. 18114 records in RAM.
INFO 2026-06-08 09:00:03 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:20:00s. Time for last 1,000,000: 2s. Last read position: chr19:48,956,224
INFO 2026-06-08 09:00:03 MarkDuplicates Tracking 117772 as yet unmatched pairs. 16387 records in RAM.
INFO 2026-06-08 09:00:04 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr19:49,490,833
INFO 2026-06-08 09:00:04 MarkDuplicates Tracking 120099 as yet unmatched pairs. 18708 records in RAM.
INFO 2026-06-08 09:00:06 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr19:49,686,678
INFO 2026-06-08 09:00:06 MarkDuplicates Tracking 114144 as yet unmatched pairs. 12753 records in RAM.
INFO 2026-06-08 09:00:07 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr19:50,378,196
INFO 2026-06-08 09:00:07 MarkDuplicates Tracking 111406 as yet unmatched pairs. 10013 records in RAM.
INFO 2026-06-08 09:00:09 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:20:06s. Time for last 1,000,000: 1s. Last read position: chr19:53,454,908
INFO 2026-06-08 09:00:09 MarkDuplicates Tracking 109322 as yet unmatched pairs. 7929 records in RAM.
INFO 2026-06-08 09:00:10 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr19:54,456,890
INFO 2026-06-08 09:00:10 MarkDuplicates Tracking 108170 as yet unmatched pairs. 6777 records in RAM.
INFO 2026-06-08 09:00:12 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:20:09s. Time for last 1,000,000: 1s. Last read position: chr19:55,388,001
INFO 2026-06-08 09:00:12 MarkDuplicates Tracking 108112 as yet unmatched pairs. 6717 records in RAM.
INFO 2026-06-08 09:00:14 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:20:11s. Time for last 1,000,000: 1s. Last read position: chr19:57,808,680
INFO 2026-06-08 09:00:14 MarkDuplicates Tracking 103409 as yet unmatched pairs. 2012 records in RAM.
INFO 2026-06-08 09:00:16 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:20:13s. Time for last 1,000,000: 1s. Last read position: chr20:396,208
INFO 2026-06-08 09:00:16 MarkDuplicates Tracking 102031 as yet unmatched pairs. 26152 records in RAM.
INFO 2026-06-08 09:00:17 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 1s. Last read position: chr20:3,690,248
INFO 2026-06-08 09:00:17 MarkDuplicates Tracking 99319 as yet unmatched pairs. 23440 records in RAM.
INFO 2026-06-08 09:00:19 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr20:17,600,740
INFO 2026-06-08 09:00:19 MarkDuplicates Tracking 97544 as yet unmatched pairs. 21663 records in RAM.
INFO 2026-06-08 09:00:20 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr20:20,393,164
INFO 2026-06-08 09:00:20 MarkDuplicates Tracking 95374 as yet unmatched pairs. 19493 records in RAM.
INFO 2026-06-08 09:00:22 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr20:31,782,266
INFO 2026-06-08 09:00:22 MarkDuplicates Tracking 93331 as yet unmatched pairs. 17449 records in RAM.
INFO 2026-06-08 09:00:23 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr20:34,882,926
INFO 2026-06-08 09:00:23 MarkDuplicates Tracking 91608 as yet unmatched pairs. 15725 records in RAM.
INFO 2026-06-08 09:00:25 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr20:36,656,364
INFO 2026-06-08 09:00:25 MarkDuplicates Tracking 89649 as yet unmatched pairs. 13766 records in RAM.
INFO 2026-06-08 09:00:26 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr20:43,460,535
INFO 2026-06-08 09:00:26 MarkDuplicates Tracking 88132 as yet unmatched pairs. 12249 records in RAM.
INFO 2026-06-08 09:00:28 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:20:25s. Time for last 1,000,000: 1s. Last read position: chr20:45,952,279
INFO 2026-06-08 09:00:28 MarkDuplicates Tracking 85818 as yet unmatched pairs. 9935 records in RAM.
INFO 2026-06-08 09:00:29 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:20:27s. Time for last 1,000,000: 1s. Last read position: chr20:50,191,075
INFO 2026-06-08 09:00:29 MarkDuplicates Tracking 83930 as yet unmatched pairs. 8047 records in RAM.
INFO 2026-06-08 09:00:31 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 1s. Last read position: chr20:58,909,399
INFO 2026-06-08 09:00:31 MarkDuplicates Tracking 83057 as yet unmatched pairs. 7173 records in RAM.
INFO 2026-06-08 09:00:33 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr20:62,387,352
INFO 2026-06-08 09:00:33 MarkDuplicates Tracking 81306 as yet unmatched pairs. 5422 records in RAM.
INFO 2026-06-08 09:00:34 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:20:32s. Time for last 1,000,000: 1s. Last read position: chr20:63,567,380
INFO 2026-06-08 09:00:34 MarkDuplicates Tracking 78676 as yet unmatched pairs. 2792 records in RAM.
INFO 2026-06-08 09:00:36 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:20:34s. Time for last 1,000,000: 2s. Last read position: chr21:8,208,180
INFO 2026-06-08 09:00:36 MarkDuplicates Tracking 75528 as yet unmatched pairs. 15909 records in RAM.
INFO 2026-06-08 09:00:37 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 0s. Last read position: chr21:8,399,124
INFO 2026-06-08 09:00:37 MarkDuplicates Tracking 75224 as yet unmatched pairs. 15601 records in RAM.
INFO 2026-06-08 09:00:38 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,708
INFO 2026-06-08 09:00:38 MarkDuplicates Tracking 73541 as yet unmatched pairs. 13917 records in RAM.
INFO 2026-06-08 09:00:41 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 2s. Last read position: chr21:29,062,177
INFO 2026-06-08 09:00:41 MarkDuplicates Tracking 72716 as yet unmatched pairs. 13090 records in RAM.
INFO 2026-06-08 09:00:42 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr21:34,523,638
INFO 2026-06-08 09:00:42 MarkDuplicates Tracking 70100 as yet unmatched pairs. 10473 records in RAM.
INFO 2026-06-08 09:00:44 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr21:41,243,483
INFO 2026-06-08 09:00:44 MarkDuplicates Tracking 68557 as yet unmatched pairs. 8927 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr21:42,363,302
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 70662 as yet unmatched pairs. 11032 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 2s. Last read position: chr21:44,814,069
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 64217 as yet unmatched pairs. 4587 records in RAM.
INFO 2026-06-08 09:00:49 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:20:47s. Time for last 1,000,000: 1s. Last read position: chr21:46,002,270
INFO 2026-06-08 09:00:49 MarkDuplicates Tracking 62834 as yet unmatched pairs. 3204 records in RAM.
INFO 2026-06-08 09:00:51 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr21:46,425,894
INFO 2026-06-08 09:00:51 MarkDuplicates Tracking 60078 as yet unmatched pairs. 448 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:20:50s. Time for last 1,000,000: 1s. Last read position: chr22:20,064,508
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 57929 as yet unmatched pairs. 28559 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:20:52s. Time for last 1,000,000: 1s. Last read position: chr22:22,906,535
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 56183 as yet unmatched pairs. 26812 records in RAM.
INFO 2026-06-08 09:00:56 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr22:24,119,399
INFO 2026-06-08 09:00:56 MarkDuplicates Tracking 54118 as yet unmatched pairs. 24747 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:20:55s. Time for last 1,000,000: 1s. Last read position: chr22:29,273,757
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 53137 as yet unmatched pairs. 23766 records in RAM.
INFO 2026-06-08 09:00:59 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr22:30,244,844
INFO 2026-06-08 09:00:59 MarkDuplicates Tracking 50458 as yet unmatched pairs. 21087 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:20:58s. Time for last 1,000,000: 1s. Last read position: chr22:31,956,181
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 48046 as yet unmatched pairs. 18675 records in RAM.
INFO 2026-06-08 09:01:03 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr22:36,295,685
INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 47054 as yet unmatched pairs. 17683 records in RAM.
INFO 2026-06-08 09:01:04 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:21:01s. Time for last 1,000,000: 1s. Last read position: chr22:37,566,786
INFO 2026-06-08 09:01:04 MarkDuplicates Tracking 46072 as yet unmatched pairs. 16701 records in RAM.
INFO 2026-06-08 09:01:06 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:21:03s. Time for last 1,000,000: 1s. Last read position: chr22:38,300,850
INFO 2026-06-08 09:01:06 MarkDuplicates Tracking 42221 as yet unmatched pairs. 12849 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr22:40,265,802
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 40207 as yet unmatched pairs. 10835 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:21:06s. Time for last 1,000,000: 1s. Last read position: chr22:41,647,063
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 38342 as yet unmatched pairs. 8970 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:21:08s. Time for last 1,000,000: 1s. Last read position: chr22:43,173,735
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 36794 as yet unmatched pairs. 7422 records in RAM.
INFO 2026-06-08 09:01:12 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 1s. Last read position: chr22:49,887,023
INFO 2026-06-08 09:01:12 MarkDuplicates Tracking 34040 as yet unmatched pairs. 4668 records in RAM.
INFO 2026-06-08 09:01:14 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr22:50,290,486
INFO 2026-06-08 09:01:14 MarkDuplicates Tracking 32338 as yet unmatched pairs. 2965 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:21:14s. Time for last 1,000,000: 2s. Last read position: chrX:1,386,748
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 30040 as yet unmatched pairs. 27306 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chrX:11,120,934
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 27410 as yet unmatched pairs. 24676 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:21:17s. Time for last 1,000,000: 2s. Last read position: chrX:24,055,025
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 27099 as yet unmatched pairs. 24359 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:21:19s. Time for last 1,000,000: 1s. Last read position: chrX:41,197,464
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 23866 as yet unmatched pairs. 21126 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chrX:47,563,273
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 22045 as yet unmatched pairs. 19305 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:21:22s. Time for last 1,000,000: 1s. Last read position: chrX:49,074,888
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 19963 as yet unmatched pairs. 17223 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:21:24s. Time for last 1,000,000: 1s. Last read position: chrX:53,548,053
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 18350 as yet unmatched pairs. 15610 records in RAM.
INFO 2026-06-08 09:01:28 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 1s. Last read position: chrX:68,829,717
INFO 2026-06-08 09:01:28 MarkDuplicates Tracking 16535 as yet unmatched pairs. 13795 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chrX:72,272,626
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 17356 as yet unmatched pairs. 14616 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chrX:87,703,293
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 12335 as yet unmatched pairs. 9595 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:21:30s. Time for last 1,000,000: 1s. Last read position: chrX:118,727,652
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 10969 as yet unmatched pairs. 8229 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chrX:133,671,151
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 8952 as yet unmatched pairs. 6212 records in RAM.
INFO 2026-06-08 09:01:36 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:21:33s. Time for last 1,000,000: 1s. Last read position: chrX:153,797,520
INFO 2026-06-08 09:01:36 MarkDuplicates Tracking 8686 as yet unmatched pairs. 5946 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:21:35s. Time for last 1,000,000: 1s. Last read position: chrX:154,359,509
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 5872 as yet unmatched pairs. 3132 records in RAM.
INFO 2026-06-08 09:01:39 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 1s. Last read position: chrX:154,640,422
INFO 2026-06-08 09:01:39 MarkDuplicates Tracking 3185 as yet unmatched pairs. 445 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,519
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 2021 as yet unmatched pairs. 705 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:21:40s. Time for last 1,000,000: 1s. Last read position: GL000220.1:159,491
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 1337 as yet unmatched pairs. 21 records in RAM.
INFO 2026-06-08 09:01:44 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: KI270733.1:133,643
INFO 2026-06-08 09:01:44 MarkDuplicates Tracking 935 as yet unmatched pairs. 820 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 635808457 records. 0 pairs never matched.
INFO 2026-06-08 09:02:38 MarkDuplicates After buildSortedReadEndLists freeMemory: 204139760; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:02:38 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:02:43 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:02:44 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:02:56 OpticalDuplicateFinder Large duplicate set. size = 1128
INFO 2026-06-08 09:02:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,068
INFO 2026-06-08 09:02:56 OpticalDuplicateFinder Large duplicate set. size = 1704
INFO 2026-06-08 09:02:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,035
INFO 2026-06-08 09:03:41 OpticalDuplicateFinder Large duplicate set. size = 1282
INFO 2026-06-08 09:03:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,123
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder Large duplicate set. size = 1108
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,666
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder Large duplicate set. size = 1039
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,387
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder Large duplicate set. size = 1110
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,303
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,232
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder Large duplicate set. size = 1670
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,856
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,360
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder Large duplicate set. size = 1036
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,307
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder Large duplicate set. size = 1128
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,516
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder Large duplicate set. size = 1363
INFO 2026-06-08 09:03:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,008
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1308
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,074
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1294
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,483
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1807
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,799
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1290
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,092
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1179
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,445
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1431
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,008
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1105
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,498
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1420
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,402
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1219
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,183
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1064
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,317
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder Large duplicate set. size = 1148
INFO 2026-06-08 09:03:43 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,392
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1228
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,766
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1697
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,883
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1274
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,349
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1261
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,853
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1050
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,721
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1684
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,374
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1082
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,503
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1130
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,293
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1189
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,814
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,014
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1540
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,306
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1121
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,185
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder Large duplicate set. size = 1249
INFO 2026-06-08 09:03:44 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,651
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1085
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,666
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,734
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,098
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1365
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,330
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1006
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,945
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1144
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,745
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1044
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,912
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1107
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,107
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1098
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,083
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1055
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,543
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1054
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,398
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1559
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,491
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 2111
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,482
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,429
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1023
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,282
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1026
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,205
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 2489
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,688
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,800
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1014
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,951
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1231
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,389
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1102
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,192
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1602
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,182
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 2998
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,339
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,104
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1266
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,970
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-08 09:03:45 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,996
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder Large duplicate set. size = 1653
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,952
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder Large duplicate set. size = 1016
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,062
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder Large duplicate set. size = 1571
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,395
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder Large duplicate set. size = 2824
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,716
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,527
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder Large duplicate set. size = 1737
INFO 2026-06-08 09:03:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,485
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,155
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1990
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,326
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,739
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1008
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,061
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,489
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,944
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1120
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,426
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1521
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,140
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1810
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,030
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1989
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,926
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 3426
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,502
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,527
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,737
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1680
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,843
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1970
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,696
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1031
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,856
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1107
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,359
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 2027
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,048
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,648
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1274
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,706
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1333
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,960
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1053
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,669
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1423
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,496
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 2510
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,292
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,869
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1114
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,499
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1615
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,459
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1565
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,919
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,380
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1812
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,930
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1227
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,691
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,987
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1724
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,798
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1151
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,856
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1516
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,272
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,512
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1093
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,160
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1063
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,758
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1809
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,529
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,020
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder Large duplicate set. size = 1134
INFO 2026-06-08 09:03:47 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,502
INFO 2026-06-08 09:03:48 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 09:03:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,065
INFO 2026-06-08 09:03:48 OpticalDuplicateFinder Large duplicate set. size = 1629
INFO 2026-06-08 09:03:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,630
INFO 2026-06-08 09:03:48 OpticalDuplicateFinder Large duplicate set. size = 1262
INFO 2026-06-08 09:03:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,372
INFO 2026-06-08 09:03:48 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 09:03:48 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,432
INFO 2026-06-08 09:04:20 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:04:20 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:05:37 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:05:40 MarkDuplicates After generateDuplicateIndexes freeMemory: 203899312; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:05:40 MarkDuplicates Marking 324288681 records as duplicates.
INFO 2026-06-08 09:05:40 MarkDuplicates Found 13342195 optical duplicate clusters.
INFO 2026-06-08 09:05:40 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:05:57 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:23,068,653
INFO 2026-06-08 09:06:13 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:33s. Time for last 10,000,000: 16s. Last read position: chr1:46,272,470
INFO 2026-06-08 09:06:30 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:50s. Time for last 10,000,000: 16s. Last read position: chr1:147,624,075
INFO 2026-06-08 09:06:46 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:06s. Time for last 10,000,000: 16s. Last read position: chr1:157,544,407
INFO 2026-06-08 09:07:03 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:22s. Time for last 10,000,000: 16s. Last read position: chr1:213,242,144
INFO 2026-06-08 09:07:19 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:39s. Time for last 10,000,000: 16s. Last read position: chr2:32,916,264
INFO 2026-06-08 09:07:35 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:55s. Time for last 10,000,000: 16s. Last read position: chr2:85,354,340
INFO 2026-06-08 09:07:52 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:11s. Time for last 10,000,000: 16s. Last read position: chr2:168,129,731
INFO 2026-06-08 09:08:09 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:28s. Time for last 10,000,000: 17s. Last read position: chr2:215,376,599
INFO 2026-06-08 09:08:29 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:48s. Time for last 10,000,000: 20s. Last read position: chr2:231,711,961
INFO 2026-06-08 09:08:50 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:09s. Time for last 10,000,000: 20s. Last read position: chr3:47,661,318
INFO 2026-06-08 09:09:06 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:26s. Time for last 10,000,000: 16s. Last read position: chr3:122,359,844
INFO 2026-06-08 09:09:23 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:43s. Time for last 10,000,000: 16s. Last read position: chr3:195,780,591
INFO 2026-06-08 09:09:39 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:59s. Time for last 10,000,000: 16s. Last read position: chr4:56,448,577
INFO 2026-06-08 09:09:56 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:16s. Time for last 10,000,000: 16s. Last read position: chr5:10,414,487
INFO 2026-06-08 09:10:13 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:32s. Time for last 10,000,000: 16s. Last read position: chr5:138,465,737
INFO 2026-06-08 09:10:30 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:49s. Time for last 10,000,000: 16s. Last read position: chr5:171,868,736
INFO 2026-06-08 09:10:46 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:05s. Time for last 10,000,000: 16s. Last read position: chr6:29,888,668
INFO 2026-06-08 09:11:02 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:21s. Time for last 10,000,000: 16s. Last read position: chr6:34,418,402
INFO 2026-06-08 09:11:18 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:38s. Time for last 10,000,000: 16s. Last read position: chr6:131,951,164
INFO 2026-06-08 09:11:34 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:54s. Time for last 10,000,000: 16s. Last read position: chr7:11,375,818
INFO 2026-06-08 09:11:51 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:10s. Time for last 10,000,000: 16s. Last read position: chr7:94,400,199
INFO 2026-06-08 09:12:07 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:26s. Time for last 10,000,000: 16s. Last read position: chr7:121,371,370
INFO 2026-06-08 09:12:23 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:43s. Time for last 10,000,000: 16s. Last read position: chr8:23,322,270
INFO 2026-06-08 09:12:40 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:59s. Time for last 10,000,000: 16s. Last read position: chr8:131,985,008
INFO 2026-06-08 09:12:55 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:15s. Time for last 10,000,000: 15s. Last read position: chr8:144,791,992
INFO 2026-06-08 09:13:12 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:32s. Time for last 10,000,000: 16s. Last read position: chr9:111,647,222
INFO 2026-06-08 09:13:28 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:48s. Time for last 10,000,000: 16s. Last read position: chr9:136,506,780
INFO 2026-06-08 09:13:45 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:05s. Time for last 10,000,000: 16s. Last read position: chr10:73,797,950
INFO 2026-06-08 09:14:03 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:23s. Time for last 10,000,000: 18s. Last read position: chr10:122,579,713
INFO 2026-06-08 09:14:19 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:39s. Time for last 10,000,000: 16s. Last read position: chr11:1,017,520
INFO 2026-06-08 09:14:35 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:54s. Time for last 10,000,000: 15s. Last read position: chr11:1,245,038
INFO 2026-06-08 09:14:51 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:11s. Time for last 10,000,000: 16s. Last read position: chr11:46,310,058
INFO 2026-06-08 09:15:07 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:27s. Time for last 10,000,000: 16s. Last read position: chr11:65,627,511
INFO 2026-06-08 09:15:24 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:43s. Time for last 10,000,000: 16s. Last read position: chr11:117,986,418
INFO 2026-06-08 09:15:41 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:00s. Time for last 10,000,000: 16s. Last read position: chr12:26,631,977
INFO 2026-06-08 09:15:59 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:18s. Time for last 10,000,000: 18s. Last read position: chr12:56,600,306
INFO 2026-06-08 09:16:16 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:10:36s. Time for last 10,000,000: 17s. Last read position: chr12:112,022,163
INFO 2026-06-08 09:16:33 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:10:52s. Time for last 10,000,000: 16s. Last read position: chr13:32,407,722
INFO 2026-06-08 09:16:49 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:09s. Time for last 10,000,000: 16s. Last read position: chr14:32,154,832
INFO 2026-06-08 09:17:06 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:25s. Time for last 10,000,000: 16s. Last read position: chr14:102,983,612
INFO 2026-06-08 09:17:22 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:11:42s. Time for last 10,000,000: 16s. Last read position: chr15:43,768,558
INFO 2026-06-08 09:17:38 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:11:58s. Time for last 10,000,000: 16s. Last read position: chr15:88,856,383
INFO 2026-06-08 09:17:55 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:14s. Time for last 10,000,000: 16s. Last read position: chr16:14,251,898
INFO 2026-06-08 09:18:11 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:12:31s. Time for last 10,000,000: 16s. Last read position: chr16:29,444,434
INFO 2026-06-08 09:18:27 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:12:47s. Time for last 10,000,000: 16s. Last read position: chr16:69,937,147
INFO 2026-06-08 09:18:44 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:03s. Time for last 10,000,000: 16s. Last read position: chr17:7,222,182
INFO 2026-06-08 09:19:00 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:20s. Time for last 10,000,000: 16s. Last read position: chr17:38,256,896
INFO 2026-06-08 09:19:16 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:13:36s. Time for last 10,000,000: 16s. Last read position: chr17:50,186,490
INFO 2026-06-08 09:19:32 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:13:52s. Time for last 10,000,000: 16s. Last read position: chr17:50,191,469
INFO 2026-06-08 09:19:48 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:08s. Time for last 10,000,000: 16s. Last read position: chr17:50,197,019
INFO 2026-06-08 09:20:05 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:14:25s. Time for last 10,000,000: 16s. Last read position: chr17:75,543,439
INFO 2026-06-08 09:20:22 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:14:41s. Time for last 10,000,000: 16s. Last read position: chr18:26,035,041
INFO 2026-06-08 09:20:38 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:14:58s. Time for last 10,000,000: 16s. Last read position: chr19:4,501,965
INFO 2026-06-08 09:20:54 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:14s. Time for last 10,000,000: 16s. Last read position: chr19:14,516,904
INFO 2026-06-08 09:21:11 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:15:31s. Time for last 10,000,000: 16s. Last read position: chr19:39,388,837
INFO 2026-06-08 09:21:27 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:15:47s. Time for last 10,000,000: 16s. Last read position: chr19:45,713,390
INFO 2026-06-08 09:21:43 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:03s. Time for last 10,000,000: 16s. Last read position: chr19:57,808,680
INFO 2026-06-08 09:22:00 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:16:19s. Time for last 10,000,000: 16s. Last read position: chr20:50,191,075
INFO 2026-06-08 09:22:16 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:16:35s. Time for last 10,000,000: 15s. Last read position: chr21:42,363,302
INFO 2026-06-08 09:22:32 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:16:52s. Time for last 10,000,000: 16s. Last read position: chr22:36,295,685
INFO 2026-06-08 09:22:49 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:08s. Time for last 10,000,000: 16s. Last read position: chrX:24,055,025
INFO 2026-06-08 09:23:05 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:17:25s. Time for last 10,000,000: 16s. Last read position: chrX:153,797,520
INFO 2026-06-08 09:23:25 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:17:44s. Time for last 10,000,000: 19s. Last read position: */*
INFO 2026-06-08 09:23:28 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:23:28 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:23:28 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:23:28 MarkDuplicates Before output close freeMemory: 203857960; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:23:28 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:23:28 MarkDuplicates After output close freeMemory: 104101560; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:23:28 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 43.46 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory