Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/bf9d02041ab665deb701801e579a82/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/bfdc713ff5ad6aaa77d3db51a6e8d5/659_b6o-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/bf9d02041ab665deb701801e579a82/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/985f63add28276a170970e1e3ce463/659_b6o-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (4 inputs)

Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
          1