Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/e7c68c59ed2dd6e56035981fb157f3/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/c42cff459ba0d5372cf3d00a54992c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/c42cff459ba0d5372cf3d00a54992c/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory