File Info

Filename
.command.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/ad1ef201ccb251e9500ec6c611bda4/.command.out
Size
1.8 KB
Attempt
  AIH curated blacklist: matched 5 fusion rows (breakpoint_ID in qualified set)

================================================================================
ARRIBA FILTERING SUMMARY
================================================================================

Total fusions: 273
  Pass (FILTER=PASS): 24 (8.8%)
  Fail (FILTER=FAIL): 249 (91.2%)

AIH curated blacklist (blacklisted flag):
  Total blacklisted: 5
  All 5 blacklisted rows have FILTER=FAIL

Failure reasons (top 15):
  confidence_below_min(medium<high): 39
  confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 32
  confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 24
  confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 22
  confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 19
  confidence_below_min(low<high): 18
  confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 15
  confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 14
  confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 12
  confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 11
  confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 10
  confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 10
  confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 5
  confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 4
  confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 4

Breakdown by confidence:
  high: 24 pass, 2 fail (total: 26)
  low: 0 pass, 131 fail (total: 131)
  medium: 0 pass, 116 fail (total: 116)
Arriba filter: 273 rows -> 24 PASS; wrote 659_cYf-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered.tsv and 659_cYf-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 659_cYf-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filter_summary.txt