File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/ba0b68ce8e85cf763517d196be0fc4/.command.log
Size
4.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_6i-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/7006e39c0e12290a8f3a7d7719fb58/659_6i-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/08e9a5626f57f3c9690e61fc794d56/659_6i-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/ba0b68ce8e85cf763517d196be0fc4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/ba0b68ce8e85cf763517d196be0fc4/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
TMPRSS2--ERG
starfusion
arriba
CPNE4--ADGRG7
starfusion
arriba
DAPK2--RAD51B
starfusion
arriba
TLK2P1--AC110079.1
starfusion
AC026412.1--LPCAT1
starfusion
TLK2--AC240565.1
starfusion
COP1--UBAP2L
starfusion
arriba
TVP23C--CDRT4
arriba
AC092807.3--DDAH1
arriba
PCDHA4--PCDHAC1
arriba
PCDHA4--PCDHAC2
arriba
PCDHA4--PCDHA13
arriba
ARL13B--AC021055.1
arriba
ARL13B--LINC02031
arriba
ZNF292--NPM1P10
arriba
ZNF292--AL357522.1
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba

  0%|          | 0/19 [00:00<?, ?it/s]
Processing TMPRSS2--ERG:   0%|          | 0/19 [00:00<?, ?it/s]
Processing TMPRSS2--ERG:   5%|▌         | 1/19 [00:00<00:01,  9.12it/s]
Processing CPNE4--ADGRG7:   5%|▌         | 1/19 [00:00<00:01,  9.12it/s]
Processing CPNE4--ADGRG7:  11%|█         | 2/19 [00:00<00:01,  9.34it/s]
Processing DAPK2--RAD51B:  11%|█         | 2/19 [00:00<00:01,  9.34it/s]
Processing DAPK2--RAD51B:  16%|█▌        | 3/19 [00:00<00:01,  9.42it/s]
Processing TLK2P1--AC110079.1:  16%|█▌        | 3/19 [00:00<00:01,  9.42it/s]
Processing TLK2P1--AC110079.1:  21%|██        | 4/19 [00:00<00:01,  9.47it/s]
Processing AC026412.1--LPCAT1:  21%|██        | 4/19 [00:00<00:01,  9.47it/s]
Processing AC026412.1--LPCAT1:  26%|██▋       | 5/19 [00:00<00:01,  9.50it/s]
Processing TLK2--AC240565.1:  26%|██▋       | 5/19 [00:00<00:01,  9.50it/s]  
Processing TLK2--AC240565.1:  32%|███▏      | 6/19 [00:00<00:01,  9.52it/s]
Processing COP1--UBAP2L:  32%|███▏      | 6/19 [00:00<00:01,  9.52it/s]    
Processing COP1--UBAP2L:  37%|███▋      | 7/19 [00:00<00:01,  9.53it/s]
Processing TVP23C--CDRT4:  37%|███▋      | 7/19 [00:00<00:01,  9.53it/s]
Processing TVP23C--CDRT4:  42%|████▏     | 8/19 [00:00<00:01,  9.56it/s]
Processing AC092807.3--DDAH1:  42%|████▏     | 8/19 [00:00<00:01,  9.56it/s]
Processing AC092807.3--DDAH1:  47%|████▋     | 9/19 [00:00<00:01,  9.57it/s]
Processing PCDHA4--PCDHAC1:  47%|████▋     | 9/19 [00:00<00:01,  9.57it/s]  
Processing PCDHA4--PCDHAC1:  53%|█████▎    | 10/19 [00:01<00:00,  9.58it/s]
Processing PCDHA4--PCDHAC2:  53%|█████▎    | 10/19 [00:01<00:00,  9.58it/s]
Processing PCDHA4--PCDHAC2:  58%|█████▊    | 11/19 [00:01<00:00,  9.59it/s]
Processing PCDHA4--PCDHA13:  58%|█████▊    | 11/19 [00:01<00:00,  9.59it/s]
Processing PCDHA4--PCDHA13:  63%|██████▎   | 12/19 [00:01<00:00,  9.59it/s]
Processing ARL13B--AC021055.1:  63%|██████▎   | 12/19 [00:01<00:00,  9.59it/s]
Processing ARL13B--AC021055.1:  68%|██████▊   | 13/19 [00:01<00:00,  9.60it/s]
Processing ARL13B--LINC02031:  68%|██████▊   | 13/19 [00:01<00:00,  9.60it/s] 
Processing ARL13B--LINC02031:  74%|███████▎  | 14/19 [00:01<00:00,  9.60it/s]
Processing ZNF292--NPM1P10:  74%|███████▎  | 14/19 [00:01<00:00,  9.60it/s]  
Processing ZNF292--NPM1P10:  79%|███████▉  | 15/19 [00:01<00:00,  9.60it/s]
Processing ZNF292--AL357522.1:  79%|███████▉  | 15/19 [00:01<00:00,  9.60it/s]
Processing ZNF292--AL357522.1:  84%|████████▍ | 16/19 [00:01<00:00,  9.61it/s]
Processing PCDHA11--PCDHAC1:  84%|████████▍ | 16/19 [00:01<00:00,  9.61it/s]  
Processing PCDHA11--PCDHAC1:  89%|████████▉ | 17/19 [00:01<00:00,  9.61it/s]
Processing PCDHA11--PCDHAC2:  89%|████████▉ | 17/19 [00:01<00:00,  9.61it/s]
Processing PCDHA11--PCDHAC2:  95%|█████████▍| 18/19 [00:01<00:00,  9.62it/s]
Processing PCDHA11--PCDHA13:  95%|█████████▍| 18/19 [00:01<00:00,  9.62it/s]
Processing PCDHA11--PCDHA13: 100%|██████████| 19/19 [00:01<00:00,  9.62it/s]
Processing PCDHA11--PCDHA13: 100%|██████████| 19/19 [00:01<00:00,  9.56it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory