Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/3e464fd9b91fa09c8a3421da13d4f5/659_cq5-T1-TRNA-1_B23MHV2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/1fdfa5e8d453ffbe5039b6eb0a7652/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/1fdfa5e8d453ffbe5039b6eb0a7652/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory