Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 659_bGW-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bGW-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bGW-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:36:50.473 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:36:50 GMT 2026] MarkDuplicates --INPUT 659_bGW-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam --OUTPUT 659_bGW-T1-TRNA-1_B23MHV2LT4_1.md.bam --METRICS_FILE 659_bGW-T1-TRNA-1_B23MHV2LT4_1.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:36:50 GMT 2026] Executing as ?@nf-ddc20a4e0b178d56e223a21286783a28-9476f-d7rrr on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:36:50 MarkDuplicates Start of doWork freeMemory: 105830832; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:36:50 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:36:50 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:36:57 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 4s. Last read position: chr1:1,354,037
INFO 2026-06-08 08:36:57 MarkDuplicates Tracking 3558 as yet unmatched pairs. 673 records in RAM.
INFO 2026-06-08 08:36:59 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:07s. Time for last 1,000,000: 2s. Last read position: chr1:2,588,408
INFO 2026-06-08 08:36:59 MarkDuplicates Tracking 6271 as yet unmatched pairs. 334 records in RAM.
INFO 2026-06-08 08:37:03 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:10s. Time for last 1,000,000: 3s. Last read position: chr1:8,360,550
INFO 2026-06-08 08:37:03 MarkDuplicates Tracking 9040 as yet unmatched pairs. 363 records in RAM.
INFO 2026-06-08 08:37:06 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 3s. Last read position: chr1:11,020,492
INFO 2026-06-08 08:37:06 MarkDuplicates Tracking 12499 as yet unmatched pairs. 1138 records in RAM.
INFO 2026-06-08 08:37:09 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 2s. Last read position: chr1:15,428,698
INFO 2026-06-08 08:37:09 MarkDuplicates Tracking 14287 as yet unmatched pairs. 168 records in RAM.
INFO 2026-06-08 08:37:12 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 3s. Last read position: chr1:16,995,971
INFO 2026-06-08 08:37:12 MarkDuplicates Tracking 16769 as yet unmatched pairs. 196 records in RAM.
INFO 2026-06-08 08:37:16 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 3s. Last read position: chr1:19,655,045
INFO 2026-06-08 08:37:16 MarkDuplicates Tracking 20791 as yet unmatched pairs. 1480 records in RAM.
INFO 2026-06-08 08:37:19 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:27s. Time for last 1,000,000: 3s. Last read position: chr1:21,828,400
INFO 2026-06-08 08:37:19 MarkDuplicates Tracking 22498 as yet unmatched pairs. 517 records in RAM.
INFO 2026-06-08 08:37:22 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:29s. Time for last 1,000,000: 2s. Last read position: chr1:21,885,046
INFO 2026-06-08 08:37:22 MarkDuplicates Tracking 25530 as yet unmatched pairs. 671 records in RAM.
INFO 2026-06-08 08:37:26 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 3s. Last read position: chr1:23,693,810
INFO 2026-06-08 08:37:26 MarkDuplicates Tracking 28304 as yet unmatched pairs. 829 records in RAM.
INFO 2026-06-08 08:37:29 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 3s. Last read position: chr1:26,280,863
INFO 2026-06-08 08:37:29 MarkDuplicates Tracking 34586 as yet unmatched pairs. 4532 records in RAM.
INFO 2026-06-08 08:37:31 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 2s. Last read position: chr1:27,551,218
INFO 2026-06-08 08:37:31 MarkDuplicates Tracking 32998 as yet unmatched pairs. 307 records in RAM.
INFO 2026-06-08 08:37:35 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 3s. Last read position: chr1:31,429,010
INFO 2026-06-08 08:37:35 MarkDuplicates Tracking 35907 as yet unmatched pairs. 522 records in RAM.
INFO 2026-06-08 08:37:38 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 2s. Last read position: chr1:32,669,068
INFO 2026-06-08 08:37:38 MarkDuplicates Tracking 38295 as yet unmatched pairs. 219 records in RAM.
INFO 2026-06-08 08:37:40 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 2s. Last read position: chr1:35,603,253
INFO 2026-06-08 08:37:40 MarkDuplicates Tracking 41598 as yet unmatched pairs. 920 records in RAM.
INFO 2026-06-08 08:37:43 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:50s. Time for last 1,000,000: 3s. Last read position: chr1:39,332,095
INFO 2026-06-08 08:37:43 MarkDuplicates Tracking 43582 as yet unmatched pairs. 257 records in RAM.
INFO 2026-06-08 08:37:47 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 3s. Last read position: chr1:40,409,792
INFO 2026-06-08 08:37:47 MarkDuplicates Tracking 45908 as yet unmatched pairs. 154 records in RAM.
INFO 2026-06-08 08:37:50 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 3s. Last read position: chr1:43,545,091
INFO 2026-06-08 08:37:50 MarkDuplicates Tracking 49457 as yet unmatched pairs. 882 records in RAM.
INFO 2026-06-08 08:37:53 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 2s. Last read position: chr1:45,551,029
INFO 2026-06-08 08:37:53 MarkDuplicates Tracking 51464 as yet unmatched pairs. 142 records in RAM.
INFO 2026-06-08 08:37:57 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 3s. Last read position: chr1:51,765,849
INFO 2026-06-08 08:37:57 MarkDuplicates Tracking 54434 as yet unmatched pairs. 572 records in RAM.
INFO 2026-06-08 08:38:01 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:01:08s. Time for last 1,000,000: 4s. Last read position: chr1:56,578,939
INFO 2026-06-08 08:38:01 MarkDuplicates Tracking 56581 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 08:38:04 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:01:11s. Time for last 1,000,000: 2s. Last read position: chr1:67,420,101
INFO 2026-06-08 08:38:04 MarkDuplicates Tracking 59964 as yet unmatched pairs. 1013 records in RAM.
INFO 2026-06-08 08:38:07 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:01:14s. Time for last 1,000,000: 3s. Last read position: chr1:85,582,522
INFO 2026-06-08 08:38:07 MarkDuplicates Tracking 61757 as yet unmatched pairs. 338 records in RAM.
INFO 2026-06-08 08:38:10 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 2s. Last read position: chr1:94,499,512
INFO 2026-06-08 08:38:10 MarkDuplicates Tracking 64062 as yet unmatched pairs. 208 records in RAM.
INFO 2026-06-08 08:38:12 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 2s. Last read position: chr1:108,992,392
INFO 2026-06-08 08:38:12 MarkDuplicates Tracking 66302 as yet unmatched pairs. 93 records in RAM.
INFO 2026-06-08 08:38:16 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:23s. Time for last 1,000,000: 3s. Last read position: chr1:112,523,636
INFO 2026-06-08 08:38:16 MarkDuplicates Tracking 68683 as yet unmatched pairs. 79 records in RAM.
INFO 2026-06-08 08:38:18 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:26s. Time for last 1,000,000: 2s. Last read position: chr1:114,732,722
INFO 2026-06-08 08:38:18 MarkDuplicates Tracking 72379 as yet unmatched pairs. 1365 records in RAM.
INFO 2026-06-08 08:38:23 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:31s. Time for last 1,000,000: 4s. Last read position: chr1:119,915,790
INFO 2026-06-08 08:38:23 MarkDuplicates Tracking 74231 as yet unmatched pairs. 705 records in RAM.
INFO 2026-06-08 08:38:26 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:143,904,262
INFO 2026-06-08 08:38:26 MarkDuplicates Tracking 75631 as yet unmatched pairs. 86 records in RAM.
INFO 2026-06-08 08:38:28 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:147,287,653
INFO 2026-06-08 08:38:28 MarkDuplicates Tracking 77125 as yet unmatched pairs. 126 records in RAM.
INFO 2026-06-08 08:38:31 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 3s. Last read position: chr1:149,842,258
INFO 2026-06-08 08:38:31 MarkDuplicates Tracking 79161 as yet unmatched pairs. 747 records in RAM.
INFO 2026-06-08 08:38:34 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:42s. Time for last 1,000,000: 3s. Last read position: chr1:150,578,394
INFO 2026-06-08 08:38:34 MarkDuplicates Tracking 81821 as yet unmatched pairs. 1230 records in RAM.
INFO 2026-06-08 08:38:37 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 2s. Last read position: chr1:151,404,782
INFO 2026-06-08 08:38:37 MarkDuplicates Tracking 83126 as yet unmatched pairs. 156 records in RAM.
INFO 2026-06-08 08:38:41 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 3s. Last read position: chr1:153,940,479
INFO 2026-06-08 08:38:41 MarkDuplicates Tracking 85771 as yet unmatched pairs. 274 records in RAM.
INFO 2026-06-08 08:38:43 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:50s. Time for last 1,000,000: 2s. Last read position: chr1:154,182,987
INFO 2026-06-08 08:38:43 MarkDuplicates Tracking 88870 as yet unmatched pairs. 887 records in RAM.
INFO 2026-06-08 08:38:46 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 2s. Last read position: chr1:155,053,452
INFO 2026-06-08 08:38:46 MarkDuplicates Tracking 90938 as yet unmatched pairs. 468 records in RAM.
INFO 2026-06-08 08:38:49 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 2s. Last read position: chr1:155,257,517
INFO 2026-06-08 08:38:49 MarkDuplicates Tracking 93205 as yet unmatched pairs. 449 records in RAM.
INFO 2026-06-08 08:38:51 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 2s. Last read position: chr1:156,114,977
INFO 2026-06-08 08:38:51 MarkDuplicates Tracking 96254 as yet unmatched pairs. 927 records in RAM.
INFO 2026-06-08 08:38:54 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 2s. Last read position: chr1:156,467,550
INFO 2026-06-08 08:38:54 MarkDuplicates Tracking 98458 as yet unmatched pairs. 286 records in RAM.
INFO 2026-06-08 08:38:56 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 2s. Last read position: chr1:160,211,601
INFO 2026-06-08 08:38:56 MarkDuplicates Tracking 101935 as yet unmatched pairs. 1138 records in RAM.
INFO 2026-06-08 08:39:00 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 3s. Last read position: chr1:161,542,892
INFO 2026-06-08 08:39:00 MarkDuplicates Tracking 103450 as yet unmatched pairs. 180 records in RAM.
INFO 2026-06-08 08:39:02 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:02:10s. Time for last 1,000,000: 2s. Last read position: chr1:168,183,909
INFO 2026-06-08 08:39:02 MarkDuplicates Tracking 105887 as yet unmatched pairs. 225 records in RAM.
INFO 2026-06-08 08:39:05 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 2s. Last read position: chr1:171,527,795
INFO 2026-06-08 08:39:05 MarkDuplicates Tracking 108560 as yet unmatched pairs. 394 records in RAM.
INFO 2026-06-08 08:39:08 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 3s. Last read position: chr1:179,108,939
INFO 2026-06-08 08:39:08 MarkDuplicates Tracking 110644 as yet unmatched pairs. 69 records in RAM.
INFO 2026-06-08 08:39:10 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 2s. Last read position: chr1:183,186,350
INFO 2026-06-08 08:39:10 MarkDuplicates Tracking 114812 as yet unmatched pairs. 1691 records in RAM.
INFO 2026-06-08 08:39:13 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 3s. Last read position: chr1:186,336,505
INFO 2026-06-08 08:39:13 MarkDuplicates Tracking 115883 as yet unmatched pairs. 373 records in RAM.
INFO 2026-06-08 08:39:17 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 3s. Last read position: chr1:200,991,133
INFO 2026-06-08 08:39:17 MarkDuplicates Tracking 117921 as yet unmatched pairs. 47 records in RAM.
INFO 2026-06-08 08:39:19 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 2s. Last read position: chr1:202,013,854
INFO 2026-06-08 08:39:19 MarkDuplicates Tracking 121087 as yet unmatched pairs. 706 records in RAM.
INFO 2026-06-08 08:39:21 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 2s. Last read position: chr1:203,818,647
INFO 2026-06-08 08:39:21 MarkDuplicates Tracking 123348 as yet unmatched pairs. 420 records in RAM.
INFO 2026-06-08 08:39:23 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr1:206,648,689
INFO 2026-06-08 08:39:23 MarkDuplicates Tracking 125334 as yet unmatched pairs. 71 records in RAM.
INFO 2026-06-08 08:39:26 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:02:33s. Time for last 1,000,000: 2s. Last read position: chr1:209,618,557
INFO 2026-06-08 08:39:26 MarkDuplicates Tracking 128229 as yet unmatched pairs. 382 records in RAM.
INFO 2026-06-08 08:39:29 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr1:220,151,386
INFO 2026-06-08 08:39:29 MarkDuplicates Tracking 130632 as yet unmatched pairs. 193 records in RAM.
INFO 2026-06-08 08:39:31 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr1:225,783,356
INFO 2026-06-08 08:39:31 MarkDuplicates Tracking 133981 as yet unmatched pairs. 1042 records in RAM.
INFO 2026-06-08 08:39:33 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr1:228,148,779
INFO 2026-06-08 08:39:33 MarkDuplicates Tracking 135963 as yet unmatched pairs. 535 records in RAM.
INFO 2026-06-08 08:39:36 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:02:43s. Time for last 1,000,000: 2s. Last read position: chr1:234,357,054
INFO 2026-06-08 08:39:36 MarkDuplicates Tracking 138332 as yet unmatched pairs. 16 records in RAM.
INFO 2026-06-08 08:39:39 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr1:243,165,981
INFO 2026-06-08 08:39:39 MarkDuplicates Tracking 141113 as yet unmatched pairs. 89 records in RAM.
INFO 2026-06-08 08:39:44 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 4s. Last read position: chr2:275,144
INFO 2026-06-08 08:39:44 MarkDuplicates Tracking 144146 as yet unmatched pairs. 142360 records in RAM.
INFO 2026-06-08 08:39:46 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:54s. Time for last 1,000,000: 2s. Last read position: chr2:10,791,800
INFO 2026-06-08 08:39:46 MarkDuplicates Tracking 146695 as yet unmatched pairs. 144871 records in RAM.
INFO 2026-06-08 08:39:49 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:56s. Time for last 1,000,000: 2s. Last read position: chr2:24,076,204
INFO 2026-06-08 08:39:49 MarkDuplicates Tracking 148753 as yet unmatched pairs. 146895 records in RAM.
INFO 2026-06-08 08:39:52 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 2s. Last read position: chr2:27,083,631
INFO 2026-06-08 08:39:52 MarkDuplicates Tracking 151402 as yet unmatched pairs. 149511 records in RAM.
INFO 2026-06-08 08:39:55 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:03:03s. Time for last 1,000,000: 3s. Last read position: chr2:28,783,943
INFO 2026-06-08 08:39:55 MarkDuplicates Tracking 158619 as yet unmatched pairs. 156695 records in RAM.
INFO 2026-06-08 08:39:58 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:03:05s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,260
INFO 2026-06-08 08:39:58 MarkDuplicates Tracking 203123 as yet unmatched pairs. 152186 records in RAM.
INFO 2026-06-08 08:40:02 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:40:02 MarkDuplicates Tracking 785863 as yet unmatched pairs. 138346 records in RAM.
INFO 2026-06-08 08:40:05 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 3s. Last read position: chr2:32,916,404
INFO 2026-06-08 08:40:05 MarkDuplicates Tracking 1332737 as yet unmatched pairs. 126127 records in RAM.
INFO 2026-06-08 08:40:07 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:40:07 MarkDuplicates Tracking 1338799 as yet unmatched pairs. 125947 records in RAM.
INFO 2026-06-08 08:40:09 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 2s. Last read position: chr2:33,595,571
INFO 2026-06-08 08:40:09 MarkDuplicates Tracking 1397273 as yet unmatched pairs. 123792 records in RAM.
INFO 2026-06-08 08:40:12 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 2s. Last read position: chr2:42,295,154
INFO 2026-06-08 08:40:12 MarkDuplicates Tracking 1395249 as yet unmatched pairs. 121733 records in RAM.
INFO 2026-06-08 08:40:15 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 3s. Last read position: chr2:46,382,465
INFO 2026-06-08 08:40:15 MarkDuplicates Tracking 1392340 as yet unmatched pairs. 118778 records in RAM.
INFO 2026-06-08 08:40:18 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:03:25s. Time for last 1,000,000: 2s. Last read position: chr2:54,625,931
INFO 2026-06-08 08:40:18 MarkDuplicates Tracking 1390246 as yet unmatched pairs. 116647 records in RAM.
INFO 2026-06-08 08:40:20 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 2s. Last read position: chr2:55,549,928
INFO 2026-06-08 08:40:20 MarkDuplicates Tracking 1387485 as yet unmatched pairs. 113872 records in RAM.
INFO 2026-06-08 08:40:23 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 2s. Last read position: chr2:64,591,937
INFO 2026-06-08 08:40:23 MarkDuplicates Tracking 1385325 as yet unmatched pairs. 111667 records in RAM.
INFO 2026-06-08 08:40:26 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:03:33s. Time for last 1,000,000: 2s. Last read position: chr2:69,370,090
INFO 2026-06-08 08:40:26 MarkDuplicates Tracking 1384902 as yet unmatched pairs. 111194 records in RAM.
INFO 2026-06-08 08:40:28 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr2:73,766,498
INFO 2026-06-08 08:40:28 MarkDuplicates Tracking 1380381 as yet unmatched pairs. 106640 records in RAM.
INFO 2026-06-08 08:40:31 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr2:74,882,229
INFO 2026-06-08 08:40:31 MarkDuplicates Tracking 1377816 as yet unmatched pairs. 104054 records in RAM.
INFO 2026-06-08 08:40:34 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:03:41s. Time for last 1,000,000: 2s. Last read position: chr2:86,505,756
INFO 2026-06-08 08:40:34 MarkDuplicates Tracking 1375891 as yet unmatched pairs. 102103 records in RAM.
INFO 2026-06-08 08:40:36 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr2:96,799,590
INFO 2026-06-08 08:40:36 MarkDuplicates Tracking 1372920 as yet unmatched pairs. 99103 records in RAM.
INFO 2026-06-08 08:40:39 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 2s. Last read position: chr2:101,871,587
INFO 2026-06-08 08:40:39 MarkDuplicates Tracking 1370632 as yet unmatched pairs. 96773 records in RAM.
INFO 2026-06-08 08:40:42 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:03:49s. Time for last 1,000,000: 2s. Last read position: chr2:108,764,922
INFO 2026-06-08 08:40:42 MarkDuplicates Tracking 1369134 as yet unmatched pairs. 95240 records in RAM.
INFO 2026-06-08 08:40:44 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr2:110,534,371
INFO 2026-06-08 08:40:44 MarkDuplicates Tracking 1366756 as yet unmatched pairs. 92838 records in RAM.
INFO 2026-06-08 08:40:47 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 2s. Last read position: chr2:113,596,408
INFO 2026-06-08 08:40:47 MarkDuplicates Tracking 1365097 as yet unmatched pairs. 91159 records in RAM.
INFO 2026-06-08 08:40:50 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 2s. Last read position: chr2:128,116,275
INFO 2026-06-08 08:40:50 MarkDuplicates Tracking 1362830 as yet unmatched pairs. 88838 records in RAM.
INFO 2026-06-08 08:40:52 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 2s. Last read position: chr2:144,401,261
INFO 2026-06-08 08:40:52 MarkDuplicates Tracking 1360609 as yet unmatched pairs. 86572 records in RAM.
INFO 2026-06-08 08:40:54 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr2:151,607,524
INFO 2026-06-08 08:40:54 MarkDuplicates Tracking 1358886 as yet unmatched pairs. 84828 records in RAM.
INFO 2026-06-08 08:40:56 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr2:159,003,804
INFO 2026-06-08 08:40:56 MarkDuplicates Tracking 1356640 as yet unmatched pairs. 82532 records in RAM.
INFO 2026-06-08 08:40:59 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr2:169,806,864
INFO 2026-06-08 08:40:59 MarkDuplicates Tracking 1354654 as yet unmatched pairs. 80493 records in RAM.
INFO 2026-06-08 08:41:01 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr2:174,572,398
INFO 2026-06-08 08:41:01 MarkDuplicates Tracking 1352228 as yet unmatched pairs. 78022 records in RAM.
INFO 2026-06-08 08:41:03 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr2:178,535,460
INFO 2026-06-08 08:41:03 MarkDuplicates Tracking 1350315 as yet unmatched pairs. 76067 records in RAM.
INFO 2026-06-08 08:41:05 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 2s. Last read position: chr2:178,563,541
INFO 2026-06-08 08:41:05 MarkDuplicates Tracking 1347585 as yet unmatched pairs. 73330 records in RAM.
INFO 2026-06-08 08:41:08 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 3s. Last read position: chr2:178,589,138
INFO 2026-06-08 08:41:08 MarkDuplicates Tracking 1345396 as yet unmatched pairs. 71123 records in RAM.
INFO 2026-06-08 08:41:11 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 2s. Last read position: chr2:178,621,648
INFO 2026-06-08 08:41:11 MarkDuplicates Tracking 1343607 as yet unmatched pairs. 69327 records in RAM.
INFO 2026-06-08 08:41:14 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 2s. Last read position: chr2:178,659,212
INFO 2026-06-08 08:41:14 MarkDuplicates Tracking 1343463 as yet unmatched pairs. 69174 records in RAM.
INFO 2026-06-08 08:41:16 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 2s. Last read position: chr2:178,721,005
INFO 2026-06-08 08:41:16 MarkDuplicates Tracking 1340087 as yet unmatched pairs. 65786 records in RAM.
INFO 2026-06-08 08:41:19 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 2s. Last read position: chr2:178,795,052
INFO 2026-06-08 08:41:19 MarkDuplicates Tracking 1338194 as yet unmatched pairs. 63875 records in RAM.
INFO 2026-06-08 08:41:21 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr2:188,984,938
INFO 2026-06-08 08:41:21 MarkDuplicates Tracking 1337916 as yet unmatched pairs. 63538 records in RAM.
INFO 2026-06-08 08:41:24 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 2s. Last read position: chr2:189,004,005
INFO 2026-06-08 08:41:24 MarkDuplicates Tracking 1333703 as yet unmatched pairs. 59306 records in RAM.
INFO 2026-06-08 08:41:26 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 2s. Last read position: chr2:189,110,281
INFO 2026-06-08 08:41:26 MarkDuplicates Tracking 1329961 as yet unmatched pairs. 55539 records in RAM.
INFO 2026-06-08 08:41:28 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 2s. Last read position: chr2:197,494,656
INFO 2026-06-08 08:41:28 MarkDuplicates Tracking 1328648 as yet unmatched pairs. 54192 records in RAM.
INFO 2026-06-08 08:41:30 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr2:202,982,140
INFO 2026-06-08 08:41:30 MarkDuplicates Tracking 1324545 as yet unmatched pairs. 50040 records in RAM.
INFO 2026-06-08 08:41:32 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr2:215,332,485
INFO 2026-06-08 08:41:32 MarkDuplicates Tracking 1322263 as yet unmatched pairs. 47711 records in RAM.
INFO 2026-06-08 08:41:35 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 2s. Last read position: chr2:215,367,981
INFO 2026-06-08 08:41:35 MarkDuplicates Tracking 1329666 as yet unmatched pairs. 55104 records in RAM.
INFO 2026-06-08 08:41:37 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:04:44s. Time for last 1,000,000: 2s. Last read position: chr2:215,372,277
INFO 2026-06-08 08:41:37 MarkDuplicates Tracking 1324620 as yet unmatched pairs. 50040 records in RAM.
INFO 2026-06-08 08:41:40 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 2s. Last read position: chr2:215,375,653
INFO 2026-06-08 08:41:40 MarkDuplicates Tracking 1330823 as yet unmatched pairs. 56233 records in RAM.
INFO 2026-06-08 08:41:43 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 3s. Last read position: chr2:215,379,274
INFO 2026-06-08 08:41:43 MarkDuplicates Tracking 1338320 as yet unmatched pairs. 63722 records in RAM.
INFO 2026-06-08 08:41:46 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 2s. Last read position: chr2:215,384,960
INFO 2026-06-08 08:41:46 MarkDuplicates Tracking 1320959 as yet unmatched pairs. 46350 records in RAM.
INFO 2026-06-08 08:41:48 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 2s. Last read position: chr2:215,394,611
INFO 2026-06-08 08:41:48 MarkDuplicates Tracking 1313054 as yet unmatched pairs. 38432 records in RAM.
INFO 2026-06-08 08:41:51 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 2s. Last read position: chr2:215,404,600
INFO 2026-06-08 08:41:51 MarkDuplicates Tracking 1316044 as yet unmatched pairs. 41399 records in RAM.
INFO 2026-06-08 08:41:53 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 2s. Last read position: chr2:215,409,563
INFO 2026-06-08 08:41:53 MarkDuplicates Tracking 1325401 as yet unmatched pairs. 50742 records in RAM.
INFO 2026-06-08 08:41:56 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 2s. Last read position: chr2:215,422,091
INFO 2026-06-08 08:41:56 MarkDuplicates Tracking 1306717 as yet unmatched pairs. 32042 records in RAM.
INFO 2026-06-08 08:41:58 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 2s. Last read position: chr2:215,430,712
INFO 2026-06-08 08:41:58 MarkDuplicates Tracking 1308390 as yet unmatched pairs. 33700 records in RAM.
INFO 2026-06-08 08:42:01 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 2s. Last read position: chr2:216,499,379
INFO 2026-06-08 08:42:01 MarkDuplicates Tracking 1301766 as yet unmatched pairs. 27052 records in RAM.
INFO 2026-06-08 08:42:03 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 2s. Last read position: chr2:217,885,060
INFO 2026-06-08 08:42:03 MarkDuplicates Tracking 1295441 as yet unmatched pairs. 20708 records in RAM.
INFO 2026-06-08 08:42:06 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 2s. Last read position: chr2:219,182,358
INFO 2026-06-08 08:42:06 MarkDuplicates Tracking 1292600 as yet unmatched pairs. 17841 records in RAM.
INFO 2026-06-08 08:42:09 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 2s. Last read position: chr2:219,506,710
INFO 2026-06-08 08:42:09 MarkDuplicates Tracking 1289365 as yet unmatched pairs. 14579 records in RAM.
INFO 2026-06-08 08:42:11 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:05:18s. Time for last 1,000,000: 2s. Last read position: chr2:229,829,225
INFO 2026-06-08 08:42:11 MarkDuplicates Tracking 1286896 as yet unmatched pairs. 12068 records in RAM.
INFO 2026-06-08 08:42:14 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:05:22s. Time for last 1,000,000: 3s. Last read position: chr2:231,711,950
INFO 2026-06-08 08:42:14 MarkDuplicates Tracking 1286016 as yet unmatched pairs. 11166 records in RAM.
INFO 2026-06-08 08:42:17 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:05:24s. Time for last 1,000,000: 2s. Last read position: chr2:237,344,461
INFO 2026-06-08 08:42:17 MarkDuplicates Tracking 1283629 as yet unmatched pairs. 8750 records in RAM.
INFO 2026-06-08 08:42:19 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 2s. Last read position: chr2:237,394,596
INFO 2026-06-08 08:42:19 MarkDuplicates Tracking 1280140 as yet unmatched pairs. 5233 records in RAM.
INFO 2026-06-08 08:42:22 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 2s. Last read position: chr2:241,248,091
INFO 2026-06-08 08:42:22 MarkDuplicates Tracking 1276559 as yet unmatched pairs. 1625 records in RAM.
INFO 2026-06-08 08:42:25 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 3s. Last read position: chr3:9,757,786
INFO 2026-06-08 08:42:25 MarkDuplicates Tracking 1273585 as yet unmatched pairs. 74595 records in RAM.
INFO 2026-06-08 08:42:27 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 2s. Last read position: chr3:12,936,216
INFO 2026-06-08 08:42:27 MarkDuplicates Tracking 1271187 as yet unmatched pairs. 72164 records in RAM.
INFO 2026-06-08 08:42:30 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr3:25,620,015
INFO 2026-06-08 08:42:30 MarkDuplicates Tracking 1269152 as yet unmatched pairs. 70075 records in RAM.
INFO 2026-06-08 08:42:32 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr3:37,047,564
INFO 2026-06-08 08:42:32 MarkDuplicates Tracking 1266352 as yet unmatched pairs. 67222 records in RAM.
INFO 2026-06-08 08:42:34 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr3:41,199,534
INFO 2026-06-08 08:42:34 MarkDuplicates Tracking 1264783 as yet unmatched pairs. 65621 records in RAM.
INFO 2026-06-08 08:42:37 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 2s. Last read position: chr3:45,706,878
INFO 2026-06-08 08:42:37 MarkDuplicates Tracking 1261464 as yet unmatched pairs. 62266 records in RAM.
INFO 2026-06-08 08:42:39 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr3:47,852,860
INFO 2026-06-08 08:42:39 MarkDuplicates Tracking 1260476 as yet unmatched pairs. 61263 records in RAM.
INFO 2026-06-08 08:42:42 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:05:49s. Time for last 1,000,000: 2s. Last read position: chr3:48,794,037
INFO 2026-06-08 08:42:42 MarkDuplicates Tracking 1256478 as yet unmatched pairs. 57246 records in RAM.
INFO 2026-06-08 08:42:44 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 2s. Last read position: chr3:49,362,495
INFO 2026-06-08 08:42:44 MarkDuplicates Tracking 1255376 as yet unmatched pairs. 56129 records in RAM.
INFO 2026-06-08 08:42:47 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 2s. Last read position: chr3:50,355,395
INFO 2026-06-08 08:42:47 MarkDuplicates Tracking 1251087 as yet unmatched pairs. 51814 records in RAM.
INFO 2026-06-08 08:42:49 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 2s. Last read position: chr3:52,518,271
INFO 2026-06-08 08:42:49 MarkDuplicates Tracking 1248549 as yet unmatched pairs. 49250 records in RAM.
INFO 2026-06-08 08:42:52 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 2s. Last read position: chr3:57,896,889
INFO 2026-06-08 08:42:52 MarkDuplicates Tracking 1246407 as yet unmatched pairs. 47077 records in RAM.
INFO 2026-06-08 08:42:54 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 2s. Last read position: chr3:63,995,571
INFO 2026-06-08 08:42:54 MarkDuplicates Tracking 1243493 as yet unmatched pairs. 44129 records in RAM.
INFO 2026-06-08 08:42:57 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 2s. Last read position: chr3:87,240,708
INFO 2026-06-08 08:42:57 MarkDuplicates Tracking 1241750 as yet unmatched pairs. 42325 records in RAM.
INFO 2026-06-08 08:42:59 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 2s. Last read position: chr3:100,744,855
INFO 2026-06-08 08:42:59 MarkDuplicates Tracking 1241274 as yet unmatched pairs. 41825 records in RAM.
INFO 2026-06-08 08:43:02 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:06:09s. Time for last 1,000,000: 2s. Last read position: chr3:112,638,832
INFO 2026-06-08 08:43:02 MarkDuplicates Tracking 1236982 as yet unmatched pairs. 37479 records in RAM.
INFO 2026-06-08 08:43:05 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 2s. Last read position: chr3:121,694,655
INFO 2026-06-08 08:43:05 MarkDuplicates Tracking 1234445 as yet unmatched pairs. 34906 records in RAM.
INFO 2026-06-08 08:43:08 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 2s. Last read position: chr3:124,674,471
INFO 2026-06-08 08:43:08 MarkDuplicates Tracking 1232234 as yet unmatched pairs. 32662 records in RAM.
INFO 2026-06-08 08:43:11 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr3:128,060,178
INFO 2026-06-08 08:43:11 MarkDuplicates Tracking 1229960 as yet unmatched pairs. 30363 records in RAM.
INFO 2026-06-08 08:43:13 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 2s. Last read position: chr3:129,671,070
INFO 2026-06-08 08:43:13 MarkDuplicates Tracking 1226521 as yet unmatched pairs. 26902 records in RAM.
INFO 2026-06-08 08:43:15 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr3:139,357,838
INFO 2026-06-08 08:43:15 MarkDuplicates Tracking 1225002 as yet unmatched pairs. 25346 records in RAM.
INFO 2026-06-08 08:43:18 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 3s. Last read position: chr3:149,371,820
INFO 2026-06-08 08:43:18 MarkDuplicates Tracking 1222130 as yet unmatched pairs. 22452 records in RAM.
INFO 2026-06-08 08:43:21 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 2s. Last read position: chr3:158,543,372
INFO 2026-06-08 08:43:21 MarkDuplicates Tracking 1219339 as yet unmatched pairs. 19612 records in RAM.
INFO 2026-06-08 08:43:24 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 2s. Last read position: chr3:170,392,243
INFO 2026-06-08 08:43:24 MarkDuplicates Tracking 1216986 as yet unmatched pairs. 17232 records in RAM.
INFO 2026-06-08 08:43:26 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:06:34s. Time for last 1,000,000: 2s. Last read position: chr3:183,651,096
INFO 2026-06-08 08:43:26 MarkDuplicates Tracking 1215056 as yet unmatched pairs. 15268 records in RAM.
INFO 2026-06-08 08:43:29 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:06:36s. Time for last 1,000,000: 2s. Last read position: chr3:184,345,351
INFO 2026-06-08 08:43:29 MarkDuplicates Tracking 1212011 as yet unmatched pairs. 12196 records in RAM.
INFO 2026-06-08 08:43:32 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 3s. Last read position: chr3:188,484,617
INFO 2026-06-08 08:43:32 MarkDuplicates Tracking 1211469 as yet unmatched pairs. 11605 records in RAM.
INFO 2026-06-08 08:43:35 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:06:42s. Time for last 1,000,000: 2s. Last read position: chr3:194,427,108
INFO 2026-06-08 08:43:35 MarkDuplicates Tracking 1207781 as yet unmatched pairs. 7889 records in RAM.
INFO 2026-06-08 08:43:37 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:06:44s. Time for last 1,000,000: 2s. Last read position: chr3:195,779,044
INFO 2026-06-08 08:43:37 MarkDuplicates Tracking 1206887 as yet unmatched pairs. 6973 records in RAM.
INFO 2026-06-08 08:43:39 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 2s. Last read position: chr3:195,782,284
INFO 2026-06-08 08:43:39 MarkDuplicates Tracking 1210333 as yet unmatched pairs. 10409 records in RAM.
INFO 2026-06-08 08:43:41 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 2s. Last read position: chr3:195,785,545
INFO 2026-06-08 08:43:41 MarkDuplicates Tracking 1207845 as yet unmatched pairs. 7908 records in RAM.
INFO 2026-06-08 08:43:43 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:06:51s. Time for last 1,000,000: 2s. Last read position: chr3:196,472,419
INFO 2026-06-08 08:43:43 MarkDuplicates Tracking 1201254 as yet unmatched pairs. 1309 records in RAM.
INFO 2026-06-08 08:43:47 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 3s. Last read position: chr4:1,170,493
INFO 2026-06-08 08:43:47 MarkDuplicates Tracking 1198851 as yet unmatched pairs. 41698 records in RAM.
INFO 2026-06-08 08:43:49 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 2s. Last read position: chr4:2,931,825
INFO 2026-06-08 08:43:49 MarkDuplicates Tracking 1196261 as yet unmatched pairs. 39089 records in RAM.
INFO 2026-06-08 08:43:52 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 3s. Last read position: chr4:7,786,245
INFO 2026-06-08 08:43:52 MarkDuplicates Tracking 1193684 as yet unmatched pairs. 36474 records in RAM.
INFO 2026-06-08 08:43:55 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:07:02s. Time for last 1,000,000: 2s. Last read position: chr4:20,541,462
INFO 2026-06-08 08:43:55 MarkDuplicates Tracking 1190326 as yet unmatched pairs. 33082 records in RAM.
INFO 2026-06-08 08:43:58 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 2s. Last read position: chr4:39,454,160
INFO 2026-06-08 08:43:58 MarkDuplicates Tracking 1190355 as yet unmatched pairs. 33076 records in RAM.
INFO 2026-06-08 08:44:00 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 2s. Last read position: chr4:48,850,038
INFO 2026-06-08 08:44:00 MarkDuplicates Tracking 1185626 as yet unmatched pairs. 28310 records in RAM.
INFO 2026-06-08 08:44:03 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:07:10s. Time for last 1,000,000: 2s. Last read position: chr4:57,040,849
INFO 2026-06-08 08:44:03 MarkDuplicates Tracking 1187384 as yet unmatched pairs. 30052 records in RAM.
INFO 2026-06-08 08:44:05 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 2s. Last read position: chr4:73,742,006
INFO 2026-06-08 08:44:05 MarkDuplicates Tracking 1183590 as yet unmatched pairs. 26223 records in RAM.
INFO 2026-06-08 08:44:07 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 2s. Last read position: chr4:76,689,602
INFO 2026-06-08 08:44:07 MarkDuplicates Tracking 1178030 as yet unmatched pairs. 20639 records in RAM.
INFO 2026-06-08 08:44:10 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 2s. Last read position: chr4:84,778,514
INFO 2026-06-08 08:44:10 MarkDuplicates Tracking 1175758 as yet unmatched pairs. 18329 records in RAM.
INFO 2026-06-08 08:44:13 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:07:20s. Time for last 1,000,000: 2s. Last read position: chr4:94,618,097
INFO 2026-06-08 08:44:13 MarkDuplicates Tracking 1173920 as yet unmatched pairs. 16456 records in RAM.
INFO 2026-06-08 08:44:15 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 2s. Last read position: chr4:109,757,763
INFO 2026-06-08 08:44:15 MarkDuplicates Tracking 1171220 as yet unmatched pairs. 13716 records in RAM.
INFO 2026-06-08 08:44:17 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:07:24s. Time for last 1,000,000: 1s. Last read position: chr4:119,292,647
INFO 2026-06-08 08:44:17 MarkDuplicates Tracking 1168975 as yet unmatched pairs. 11445 records in RAM.
INFO 2026-06-08 08:44:19 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:07:26s. Time for last 1,000,000: 1s. Last read position: chr4:139,698,439
INFO 2026-06-08 08:44:19 MarkDuplicates Tracking 1166862 as yet unmatched pairs. 9301 records in RAM.
INFO 2026-06-08 08:44:21 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:07:28s. Time for last 1,000,000: 2s. Last read position: chr4:152,411,346
INFO 2026-06-08 08:44:21 MarkDuplicates Tracking 1164618 as yet unmatched pairs. 7021 records in RAM.
INFO 2026-06-08 08:44:24 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 2s. Last read position: chr4:168,878,094
INFO 2026-06-08 08:44:24 MarkDuplicates Tracking 1162556 as yet unmatched pairs. 4920 records in RAM.
INFO 2026-06-08 08:44:26 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 2s. Last read position: chr4:186,589,110
INFO 2026-06-08 08:44:26 MarkDuplicates Tracking 1159974 as yet unmatched pairs. 2315 records in RAM.
INFO 2026-06-08 08:44:30 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 3s. Last read position: chr5:889,632
INFO 2026-06-08 08:44:30 MarkDuplicates Tracking 1156867 as yet unmatched pairs. 58702 records in RAM.
INFO 2026-06-08 08:44:33 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 3s. Last read position: chr5:14,290,711
INFO 2026-06-08 08:44:33 MarkDuplicates Tracking 1154911 as yet unmatched pairs. 56719 records in RAM.
INFO 2026-06-08 08:44:36 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 3s. Last read position: chr5:14,741,869
INFO 2026-06-08 08:44:36 MarkDuplicates Tracking 1152167 as yet unmatched pairs. 53959 records in RAM.
INFO 2026-06-08 08:44:39 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 2s. Last read position: chr5:36,117,735
INFO 2026-06-08 08:44:39 MarkDuplicates Tracking 1149488 as yet unmatched pairs. 51252 records in RAM.
INFO 2026-06-08 08:44:42 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:07:49s. Time for last 1,000,000: 2s. Last read position: chr5:43,381,059
INFO 2026-06-08 08:44:42 MarkDuplicates Tracking 1147060 as yet unmatched pairs. 48790 records in RAM.
INFO 2026-06-08 08:44:44 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:07:51s. Time for last 1,000,000: 2s. Last read position: chr5:65,018,177
INFO 2026-06-08 08:44:44 MarkDuplicates Tracking 1144747 as yet unmatched pairs. 46442 records in RAM.
INFO 2026-06-08 08:44:47 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 2s. Last read position: chr5:72,848,431
INFO 2026-06-08 08:44:47 MarkDuplicates Tracking 1143061 as yet unmatched pairs. 44716 records in RAM.
INFO 2026-06-08 08:44:49 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 2s. Last read position: chr5:79,738,826
INFO 2026-06-08 08:44:49 MarkDuplicates Tracking 1140362 as yet unmatched pairs. 41995 records in RAM.
INFO 2026-06-08 08:44:51 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 2s. Last read position: chr5:83,540,979
INFO 2026-06-08 08:44:51 MarkDuplicates Tracking 1138257 as yet unmatched pairs. 39865 records in RAM.
INFO 2026-06-08 08:44:54 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 2s. Last read position: chr5:96,803,566
INFO 2026-06-08 08:44:54 MarkDuplicates Tracking 1135922 as yet unmatched pairs. 37500 records in RAM.
INFO 2026-06-08 08:44:56 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 2s. Last read position: chr5:119,536,509
INFO 2026-06-08 08:44:56 MarkDuplicates Tracking 1133522 as yet unmatched pairs. 35063 records in RAM.
INFO 2026-06-08 08:44:59 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 2s. Last read position: chr5:132,825,303
INFO 2026-06-08 08:44:59 MarkDuplicates Tracking 1130843 as yet unmatched pairs. 32359 records in RAM.
INFO 2026-06-08 08:45:02 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 2s. Last read position: chr5:136,060,902
INFO 2026-06-08 08:45:02 MarkDuplicates Tracking 1129794 as yet unmatched pairs. 31294 records in RAM.
INFO 2026-06-08 08:45:04 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 2s. Last read position: chr5:139,316,124
INFO 2026-06-08 08:45:04 MarkDuplicates Tracking 1127347 as yet unmatched pairs. 28820 records in RAM.
INFO 2026-06-08 08:45:06 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 2s. Last read position: chr5:141,415,244
INFO 2026-06-08 08:45:06 MarkDuplicates Tracking 1123773 as yet unmatched pairs. 25217 records in RAM.
INFO 2026-06-08 08:45:09 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 3s. Last read position: chr5:147,509,754
INFO 2026-06-08 08:45:09 MarkDuplicates Tracking 1121132 as yet unmatched pairs. 22524 records in RAM.
INFO 2026-06-08 08:45:12 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:08:19s. Time for last 1,000,000: 2s. Last read position: chr5:150,135,779
INFO 2026-06-08 08:45:12 MarkDuplicates Tracking 1121000 as yet unmatched pairs. 22376 records in RAM.
INFO 2026-06-08 08:45:15 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:08:22s. Time for last 1,000,000: 2s. Last read position: chr5:150,407,245
INFO 2026-06-08 08:45:15 MarkDuplicates Tracking 1117497 as yet unmatched pairs. 18849 records in RAM.
INFO 2026-06-08 08:45:17 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:08:24s. Time for last 1,000,000: 2s. Last read position: chr5:151,666,426
INFO 2026-06-08 08:45:17 MarkDuplicates Tracking 1114381 as yet unmatched pairs. 15700 records in RAM.
INFO 2026-06-08 08:45:20 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:08:27s. Time for last 1,000,000: 2s. Last read position: chr5:163,442,049
INFO 2026-06-08 08:45:20 MarkDuplicates Tracking 1111129 as yet unmatched pairs. 12411 records in RAM.
INFO 2026-06-08 08:45:23 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:08:31s. Time for last 1,000,000: 3s. Last read position: chr5:171,407,744
INFO 2026-06-08 08:45:23 MarkDuplicates Tracking 1117940 as yet unmatched pairs. 19211 records in RAM.
INFO 2026-06-08 08:45:26 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:08:33s. Time for last 1,000,000: 2s. Last read position: chr5:177,337,468
INFO 2026-06-08 08:45:26 MarkDuplicates Tracking 1106120 as yet unmatched pairs. 7354 records in RAM.
INFO 2026-06-08 08:45:28 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:08:36s. Time for last 1,000,000: 2s. Last read position: chr5:179,724,714
INFO 2026-06-08 08:45:28 MarkDuplicates Tracking 1104289 as yet unmatched pairs. 5501 records in RAM.
INFO 2026-06-08 08:45:31 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:08:38s. Time for last 1,000,000: 2s. Last read position: chr5:179,836,674
INFO 2026-06-08 08:45:31 MarkDuplicates Tracking 1100883 as yet unmatched pairs. 2073 records in RAM.
INFO 2026-06-08 08:45:35 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:08:42s. Time for last 1,000,000: 4s. Last read position: chr6:3,118,728
INFO 2026-06-08 08:45:35 MarkDuplicates Tracking 1097757 as yet unmatched pairs. 74220 records in RAM.
INFO 2026-06-08 08:45:38 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 2s. Last read position: chr6:7,582,917
INFO 2026-06-08 08:45:38 MarkDuplicates Tracking 1095415 as yet unmatched pairs. 71836 records in RAM.
INFO 2026-06-08 08:45:40 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 2s. Last read position: chr6:17,850,331
INFO 2026-06-08 08:45:40 MarkDuplicates Tracking 1092898 as yet unmatched pairs. 69289 records in RAM.
INFO 2026-06-08 08:45:42 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:08:50s. Time for last 1,000,000: 2s. Last read position: chr6:26,204,638
INFO 2026-06-08 08:45:42 MarkDuplicates Tracking 1090484 as yet unmatched pairs. 66844 records in RAM.
INFO 2026-06-08 08:45:44 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 1s. Last read position: chr6:29,889,370
INFO 2026-06-08 08:45:44 MarkDuplicates Tracking 1089615 as yet unmatched pairs. 65947 records in RAM.
INFO 2026-06-08 08:45:46 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:08:54s. Time for last 1,000,000: 2s. Last read position: chr6:30,603,259
INFO 2026-06-08 08:45:46 MarkDuplicates Tracking 1085896 as yet unmatched pairs. 62218 records in RAM.
INFO 2026-06-08 08:45:49 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:08:56s. Time for last 1,000,000: 2s. Last read position: chr6:31,271,244
INFO 2026-06-08 08:45:49 MarkDuplicates Tracking 1085605 as yet unmatched pairs. 61903 records in RAM.
INFO 2026-06-08 08:45:51 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 2s. Last read position: chr6:31,644,384
INFO 2026-06-08 08:45:51 MarkDuplicates Tracking 1082457 as yet unmatched pairs. 58724 records in RAM.
INFO 2026-06-08 08:45:54 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:09:01s. Time for last 1,000,000: 2s. Last read position: chr6:31,816,385
INFO 2026-06-08 08:45:54 MarkDuplicates Tracking 1079302 as yet unmatched pairs. 55558 records in RAM.
INFO 2026-06-08 08:45:56 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:09:03s. Time for last 1,000,000: 1s. Last read position: chr6:31,827,988
INFO 2026-06-08 08:45:56 MarkDuplicates Tracking 1080756 as yet unmatched pairs. 57004 records in RAM.
INFO 2026-06-08 08:45:58 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:09:05s. Time for last 1,000,000: 2s. Last read position: chr6:31,829,531
INFO 2026-06-08 08:45:58 MarkDuplicates Tracking 1076794 as yet unmatched pairs. 53037 records in RAM.
INFO 2026-06-08 08:46:01 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 3s. Last read position: chr6:32,025,583
INFO 2026-06-08 08:46:01 MarkDuplicates Tracking 1074363 as yet unmatched pairs. 50590 records in RAM.
INFO 2026-06-08 08:46:04 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 2s. Last read position: chr6:32,979,978
INFO 2026-06-08 08:46:04 MarkDuplicates Tracking 1072430 as yet unmatched pairs. 48646 records in RAM.
INFO 2026-06-08 08:46:07 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 2s. Last read position: chr6:33,665,178
INFO 2026-06-08 08:46:07 MarkDuplicates Tracking 1068892 as yet unmatched pairs. 45084 records in RAM.
INFO 2026-06-08 08:46:09 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 2s. Last read position: chr6:36,210,425
INFO 2026-06-08 08:46:09 MarkDuplicates Tracking 1066176 as yet unmatched pairs. 42346 records in RAM.
INFO 2026-06-08 08:46:12 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr6:42,208,355
INFO 2026-06-08 08:46:12 MarkDuplicates Tracking 1064070 as yet unmatched pairs. 40186 records in RAM.
INFO 2026-06-08 08:46:14 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 2s. Last read position: chr6:43,778,409
INFO 2026-06-08 08:46:14 MarkDuplicates Tracking 1061296 as yet unmatched pairs. 37395 records in RAM.
INFO 2026-06-08 08:46:16 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:09:24s. Time for last 1,000,000: 2s. Last read position: chr6:50,528,775
INFO 2026-06-08 08:46:16 MarkDuplicates Tracking 1058407 as yet unmatched pairs. 34478 records in RAM.
INFO 2026-06-08 08:46:19 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:09:27s. Time for last 1,000,000: 3s. Last read position: chr6:57,148,293
INFO 2026-06-08 08:46:19 MarkDuplicates Tracking 1056194 as yet unmatched pairs. 32179 records in RAM.
INFO 2026-06-08 08:46:22 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 2s. Last read position: chr6:75,133,405
INFO 2026-06-08 08:46:22 MarkDuplicates Tracking 1054352 as yet unmatched pairs. 30290 records in RAM.
INFO 2026-06-08 08:46:24 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:09:31s. Time for last 1,000,000: 2s. Last read position: chr6:82,364,985
INFO 2026-06-08 08:46:24 MarkDuplicates Tracking 1051720 as yet unmatched pairs. 27631 records in RAM.
INFO 2026-06-08 08:46:26 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 2s. Last read position: chr6:89,951,470
INFO 2026-06-08 08:46:26 MarkDuplicates Tracking 1049146 as yet unmatched pairs. 25028 records in RAM.
INFO 2026-06-08 08:46:28 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:09:36s. Time for last 1,000,000: 2s. Last read position: chr6:109,370,458
INFO 2026-06-08 08:46:28 MarkDuplicates Tracking 1048314 as yet unmatched pairs. 24161 records in RAM.
INFO 2026-06-08 08:46:30 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 2s. Last read position: chr6:116,279,602
INFO 2026-06-08 08:46:30 MarkDuplicates Tracking 1044385 as yet unmatched pairs. 20201 records in RAM.
INFO 2026-06-08 08:46:33 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 2s. Last read position: chr6:129,611,545
INFO 2026-06-08 08:46:33 MarkDuplicates Tracking 1042210 as yet unmatched pairs. 17987 records in RAM.
INFO 2026-06-08 08:46:35 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 2s. Last read position: chr6:136,278,529
INFO 2026-06-08 08:46:35 MarkDuplicates Tracking 1039687 as yet unmatched pairs. 15432 records in RAM.
INFO 2026-06-08 08:46:38 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 2s. Last read position: chr6:144,291,775
INFO 2026-06-08 08:46:38 MarkDuplicates Tracking 1037234 as yet unmatched pairs. 12947 records in RAM.
INFO 2026-06-08 08:46:40 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 2s. Last read position: chr6:151,351,837
INFO 2026-06-08 08:46:40 MarkDuplicates Tracking 1034796 as yet unmatched pairs. 10479 records in RAM.
INFO 2026-06-08 08:46:42 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 2s. Last read position: chr6:158,503,381
INFO 2026-06-08 08:46:42 MarkDuplicates Tracking 1032448 as yet unmatched pairs. 8106 records in RAM.
INFO 2026-06-08 08:46:45 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 3s. Last read position: chr6:159,682,531
INFO 2026-06-08 08:46:45 MarkDuplicates Tracking 1032950 as yet unmatched pairs. 8586 records in RAM.
INFO 2026-06-08 08:46:48 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 2s. Last read position: chr6:166,365,973
INFO 2026-06-08 08:46:48 MarkDuplicates Tracking 1027639 as yet unmatched pairs. 3241 records in RAM.
INFO 2026-06-08 08:46:51 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 2s. Last read position: chr6:169,751,361
INFO 2026-06-08 08:46:51 MarkDuplicates Tracking 1024845 as yet unmatched pairs. 413 records in RAM.
INFO 2026-06-08 08:46:55 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 3s. Last read position: chr7:2,607,258
INFO 2026-06-08 08:46:55 MarkDuplicates Tracking 1021855 as yet unmatched pairs. 92459 records in RAM.
INFO 2026-06-08 08:46:58 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 3s. Last read position: chr7:5,421,074
INFO 2026-06-08 08:46:58 MarkDuplicates Tracking 1019280 as yet unmatched pairs. 89850 records in RAM.
INFO 2026-06-08 08:47:00 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,349
INFO 2026-06-08 08:47:00 MarkDuplicates Tracking 1028520 as yet unmatched pairs. 99070 records in RAM.
INFO 2026-06-08 08:47:03 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 2s. Last read position: chr7:5,529,538
INFO 2026-06-08 08:47:03 MarkDuplicates Tracking 1020211 as yet unmatched pairs. 90741 records in RAM.
INFO 2026-06-08 08:47:05 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:10:12s. Time for last 1,000,000: 2s. Last read position: chr7:7,969,725
INFO 2026-06-08 08:47:05 MarkDuplicates Tracking 1010703 as yet unmatched pairs. 81219 records in RAM.
INFO 2026-06-08 08:47:08 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 2s. Last read position: chr7:26,185,280
INFO 2026-06-08 08:47:08 MarkDuplicates Tracking 1008631 as yet unmatched pairs. 79102 records in RAM.
INFO 2026-06-08 08:47:11 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 3s. Last read position: chr7:32,559,172
INFO 2026-06-08 08:47:11 MarkDuplicates Tracking 1006074 as yet unmatched pairs. 76521 records in RAM.
INFO 2026-06-08 08:47:14 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 2s. Last read position: chr7:42,921,907
INFO 2026-06-08 08:47:14 MarkDuplicates Tracking 1003484 as yet unmatched pairs. 73891 records in RAM.
INFO 2026-06-08 08:47:17 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:10:24s. Time for last 1,000,000: 2s. Last read position: chr7:44,116,261
INFO 2026-06-08 08:47:17 MarkDuplicates Tracking 1000953 as yet unmatched pairs. 71348 records in RAM.
INFO 2026-06-08 08:47:21 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:10:28s. Time for last 1,000,000: 4s. Last read position: chr7:47,437,274
INFO 2026-06-08 08:47:21 MarkDuplicates Tracking 998054 as yet unmatched pairs. 68420 records in RAM.
INFO 2026-06-08 08:47:24 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:10:31s. Time for last 1,000,000: 2s. Last read position: chr7:66,092,814
INFO 2026-06-08 08:47:24 MarkDuplicates Tracking 995471 as yet unmatched pairs. 65807 records in RAM.
INFO 2026-06-08 08:47:26 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:10:33s. Time for last 1,000,000: 2s. Last read position: chr7:73,537,938
INFO 2026-06-08 08:47:26 MarkDuplicates Tracking 994107 as yet unmatched pairs. 64425 records in RAM.
INFO 2026-06-08 08:47:28 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 2s. Last read position: chr7:75,020,062
INFO 2026-06-08 08:47:28 MarkDuplicates Tracking 991419 as yet unmatched pairs. 61712 records in RAM.
INFO 2026-06-08 08:47:31 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 2s. Last read position: chr7:76,302,902
INFO 2026-06-08 08:47:31 MarkDuplicates Tracking 993142 as yet unmatched pairs. 63423 records in RAM.
INFO 2026-06-08 08:47:34 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 2s. Last read position: chr7:80,663,081
INFO 2026-06-08 08:47:34 MarkDuplicates Tracking 986676 as yet unmatched pairs. 56929 records in RAM.
INFO 2026-06-08 08:47:37 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 2s. Last read position: chr7:92,487,477
INFO 2026-06-08 08:47:37 MarkDuplicates Tracking 984430 as yet unmatched pairs. 54659 records in RAM.
INFO 2026-06-08 08:47:40 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 3s. Last read position: chr7:94,413,133
INFO 2026-06-08 08:47:40 MarkDuplicates Tracking 984839 as yet unmatched pairs. 55048 records in RAM.
INFO 2026-06-08 08:47:45 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 4s. Last read position: chr7:94,664,018
INFO 2026-06-08 08:47:45 MarkDuplicates Tracking 979115 as yet unmatched pairs. 49299 records in RAM.
INFO 2026-06-08 08:47:49 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 3s. Last read position: chr7:99,423,905
INFO 2026-06-08 08:47:49 MarkDuplicates Tracking 976325 as yet unmatched pairs. 46486 records in RAM.
INFO 2026-06-08 08:47:52 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 2s. Last read position: chr7:100,607,659
INFO 2026-06-08 08:47:52 MarkDuplicates Tracking 973911 as yet unmatched pairs. 44059 records in RAM.
INFO 2026-06-08 08:47:55 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:11:02s. Time for last 1,000,000: 3s. Last read position: chr7:100,992,263
INFO 2026-06-08 08:47:55 MarkDuplicates Tracking 972376 as yet unmatched pairs. 42515 records in RAM.
INFO 2026-06-08 08:47:57 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 2s. Last read position: chr7:100,993,577
INFO 2026-06-08 08:47:57 MarkDuplicates Tracking 971509 as yet unmatched pairs. 41646 records in RAM.
INFO 2026-06-08 08:48:00 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:11:07s. Time for last 1,000,000: 2s. Last read position: chr7:100,994,654
INFO 2026-06-08 08:48:00 MarkDuplicates Tracking 970872 as yet unmatched pairs. 41008 records in RAM.
INFO 2026-06-08 08:48:02 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,668
INFO 2026-06-08 08:48:02 MarkDuplicates Tracking 971557 as yet unmatched pairs. 41692 records in RAM.
INFO 2026-06-08 08:48:04 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 2s. Last read position: chr7:100,996,400
INFO 2026-06-08 08:48:04 MarkDuplicates Tracking 976838 as yet unmatched pairs. 46971 records in RAM.
INFO 2026-06-08 08:48:08 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:11:15s. Time for last 1,000,000: 4s. Last read position: chr7:100,996,922
INFO 2026-06-08 08:48:08 MarkDuplicates Tracking 973769 as yet unmatched pairs. 43897 records in RAM.
INFO 2026-06-08 08:48:11 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:11:18s. Time for last 1,000,000: 2s. Last read position: chr7:100,997,602
INFO 2026-06-08 08:48:11 MarkDuplicates Tracking 970282 as yet unmatched pairs. 40404 records in RAM.
INFO 2026-06-08 08:48:13 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:11:20s. Time for last 1,000,000: 2s. Last read position: chr7:100,998,301
INFO 2026-06-08 08:48:13 MarkDuplicates Tracking 967363 as yet unmatched pairs. 37481 records in RAM.
INFO 2026-06-08 08:48:15 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 2s. Last read position: chr7:100,998,904
INFO 2026-06-08 08:48:15 MarkDuplicates Tracking 966854 as yet unmatched pairs. 36967 records in RAM.
INFO 2026-06-08 08:49:48 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:12:56s. Time for last 1,000,000: 93s. Last read position: chr7:100,999,742
INFO 2026-06-08 08:49:48 MarkDuplicates Tracking 968673 as yet unmatched pairs. 38780 records in RAM.
INFO 2026-06-08 08:49:52 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:12:59s. Time for last 1,000,000: 3s. Last read position: chr7:101,000,486
INFO 2026-06-08 08:49:52 MarkDuplicates Tracking 969635 as yet unmatched pairs. 39735 records in RAM.
INFO 2026-06-08 08:49:54 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 2s. Last read position: chr7:101,001,173
INFO 2026-06-08 08:49:54 MarkDuplicates Tracking 965965 as yet unmatched pairs. 36059 records in RAM.
INFO 2026-06-08 08:49:56 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 2s. Last read position: chr7:101,001,778
INFO 2026-06-08 08:49:56 MarkDuplicates Tracking 963334 as yet unmatched pairs. 33426 records in RAM.
INFO 2026-06-08 08:49:58 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,649
INFO 2026-06-08 08:49:58 MarkDuplicates Tracking 962019 as yet unmatched pairs. 32106 records in RAM.
INFO 2026-06-08 08:50:00 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:13:07s. Time for last 1,000,000: 2s. Last read position: chr7:101,004,223
INFO 2026-06-08 08:50:00 MarkDuplicates Tracking 960379 as yet unmatched pairs. 30464 records in RAM.
INFO 2026-06-08 08:50:03 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 2s. Last read position: chr7:102,496,919
INFO 2026-06-08 08:50:03 MarkDuplicates Tracking 958092 as yet unmatched pairs. 28168 records in RAM.
INFO 2026-06-08 08:50:05 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 2s. Last read position: chr7:107,159,447
INFO 2026-06-08 08:50:05 MarkDuplicates Tracking 956178 as yet unmatched pairs. 26227 records in RAM.
INFO 2026-06-08 08:50:08 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 2s. Last read position: chr7:116,699,353
INFO 2026-06-08 08:50:08 MarkDuplicates Tracking 957888 as yet unmatched pairs. 27902 records in RAM.
INFO 2026-06-08 08:50:11 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr7:121,015,782
INFO 2026-06-08 08:50:11 MarkDuplicates Tracking 951481 as yet unmatched pairs. 21486 records in RAM.
INFO 2026-06-08 08:50:14 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 2s. Last read position: chr7:128,089,558
INFO 2026-06-08 08:50:14 MarkDuplicates Tracking 951795 as yet unmatched pairs. 21780 records in RAM.
INFO 2026-06-08 08:50:17 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 3s. Last read position: chr7:131,397,244
INFO 2026-06-08 08:50:17 MarkDuplicates Tracking 946885 as yet unmatched pairs. 16851 records in RAM.
INFO 2026-06-08 08:50:20 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:13:27s. Time for last 1,000,000: 2s. Last read position: chr7:137,905,758
INFO 2026-06-08 08:50:20 MarkDuplicates Tracking 945003 as yet unmatched pairs. 14947 records in RAM.
INFO 2026-06-08 08:50:22 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 2s. Last read position: chr7:140,785,666
INFO 2026-06-08 08:50:22 MarkDuplicates Tracking 942878 as yet unmatched pairs. 12807 records in RAM.
INFO 2026-06-08 08:50:25 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:13:32s. Time for last 1,000,000: 2s. Last read position: chr7:144,188,016
INFO 2026-06-08 08:50:25 MarkDuplicates Tracking 939658 as yet unmatched pairs. 9576 records in RAM.
INFO 2026-06-08 08:50:27 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 2s. Last read position: chr7:150,371,424
INFO 2026-06-08 08:50:27 MarkDuplicates Tracking 938969 as yet unmatched pairs. 8859 records in RAM.
INFO 2026-06-08 08:50:29 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 2s. Last read position: chr7:151,078,609
INFO 2026-06-08 08:50:29 MarkDuplicates Tracking 935238 as yet unmatched pairs. 5117 records in RAM.
INFO 2026-06-08 08:50:32 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 2s. Last read position: chr7:155,298,368
INFO 2026-06-08 08:50:32 MarkDuplicates Tracking 932389 as yet unmatched pairs. 2239 records in RAM.
INFO 2026-06-08 08:50:35 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:13:42s. Time for last 1,000,000: 2s. Last read position: chr8:8,890,455
INFO 2026-06-08 08:50:35 MarkDuplicates Tracking 929679 as yet unmatched pairs. 50388 records in RAM.
INFO 2026-06-08 08:50:37 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 2s. Last read position: chr8:20,211,181
INFO 2026-06-08 08:50:37 MarkDuplicates Tracking 927135 as yet unmatched pairs. 47818 records in RAM.
INFO 2026-06-08 08:50:39 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 2s. Last read position: chr8:25,409,973
INFO 2026-06-08 08:50:39 MarkDuplicates Tracking 924500 as yet unmatched pairs. 45157 records in RAM.
INFO 2026-06-08 08:50:41 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 2s. Last read position: chr8:37,697,406
INFO 2026-06-08 08:50:41 MarkDuplicates Tracking 922392 as yet unmatched pairs. 43014 records in RAM.
INFO 2026-06-08 08:50:44 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 2s. Last read position: chr8:38,415,971
INFO 2026-06-08 08:50:44 MarkDuplicates Tracking 919571 as yet unmatched pairs. 40184 records in RAM.
INFO 2026-06-08 08:50:47 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 2s. Last read position: chr8:42,180,510
INFO 2026-06-08 08:50:47 MarkDuplicates Tracking 917216 as yet unmatched pairs. 37815 records in RAM.
INFO 2026-06-08 08:50:49 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 2s. Last read position: chr8:54,754,895
INFO 2026-06-08 08:50:49 MarkDuplicates Tracking 913927 as yet unmatched pairs. 34503 records in RAM.
INFO 2026-06-08 08:50:51 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 2s. Last read position: chr8:69,563,986
INFO 2026-06-08 08:50:51 MarkDuplicates Tracking 912631 as yet unmatched pairs. 33180 records in RAM.
INFO 2026-06-08 08:50:54 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 2s. Last read position: chr8:73,319,105
INFO 2026-06-08 08:50:54 MarkDuplicates Tracking 909757 as yet unmatched pairs. 30284 records in RAM.
INFO 2026-06-08 08:50:57 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 2s. Last read position: chr8:92,017,272
INFO 2026-06-08 08:50:57 MarkDuplicates Tracking 907344 as yet unmatched pairs. 27839 records in RAM.
INFO 2026-06-08 08:51:00 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 2s. Last read position: chr8:100,705,615
INFO 2026-06-08 08:51:00 MarkDuplicates Tracking 905534 as yet unmatched pairs. 26003 records in RAM.
INFO 2026-06-08 08:51:03 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 3s. Last read position: chr8:106,684,245
INFO 2026-06-08 08:51:03 MarkDuplicates Tracking 902402 as yet unmatched pairs. 22834 records in RAM.
INFO 2026-06-08 08:51:06 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 3s. Last read position: chr8:123,209,443
INFO 2026-06-08 08:51:06 MarkDuplicates Tracking 900005 as yet unmatched pairs. 20384 records in RAM.
INFO 2026-06-08 08:51:09 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 2s. Last read position: chr8:127,738,904
INFO 2026-06-08 08:51:09 MarkDuplicates Tracking 898645 as yet unmatched pairs. 18997 records in RAM.
INFO 2026-06-08 08:51:12 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 2s. Last read position: chr8:143,021,704
INFO 2026-06-08 08:51:12 MarkDuplicates Tracking 894998 as yet unmatched pairs. 15313 records in RAM.
INFO 2026-06-08 08:51:14 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 2s. Last read position: chr8:143,858,497
INFO 2026-06-08 08:51:14 MarkDuplicates Tracking 893153 as yet unmatched pairs. 13438 records in RAM.
INFO 2026-06-08 08:51:16 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 2s. Last read position: chr8:143,860,588
INFO 2026-06-08 08:51:16 MarkDuplicates Tracking 893256 as yet unmatched pairs. 13539 records in RAM.
INFO 2026-06-08 08:51:18 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,961
INFO 2026-06-08 08:51:18 MarkDuplicates Tracking 892459 as yet unmatched pairs. 12741 records in RAM.
INFO 2026-06-08 08:51:20 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 2s. Last read position: chr8:143,863,321
INFO 2026-06-08 08:51:20 MarkDuplicates Tracking 892462 as yet unmatched pairs. 12728 records in RAM.
INFO 2026-06-08 08:51:21 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chr8:143,864,936
INFO 2026-06-08 08:51:21 MarkDuplicates Tracking 891656 as yet unmatched pairs. 11914 records in RAM.
INFO 2026-06-08 08:51:24 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 2s. Last read position: chr8:143,866,425
INFO 2026-06-08 08:51:24 MarkDuplicates Tracking 888930 as yet unmatched pairs. 9188 records in RAM.
INFO 2026-06-08 08:51:28 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 3s. Last read position: chr8:143,921,437
INFO 2026-06-08 08:51:28 MarkDuplicates Tracking 886545 as yet unmatched pairs. 6782 records in RAM.
INFO 2026-06-08 08:51:30 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 2s. Last read position: chr8:144,098,898
INFO 2026-06-08 08:51:30 MarkDuplicates Tracking 882437 as yet unmatched pairs. 2663 records in RAM.
INFO 2026-06-08 08:51:33 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 3s. Last read position: chr9:744,494
INFO 2026-06-08 08:51:33 MarkDuplicates Tracking 879688 as yet unmatched pairs. 55161 records in RAM.
INFO 2026-06-08 08:51:36 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:14:43s. Time for last 1,000,000: 2s. Last read position: chr9:14,307,201
INFO 2026-06-08 08:51:36 MarkDuplicates Tracking 877734 as yet unmatched pairs. 53145 records in RAM.
INFO 2026-06-08 08:51:38 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:14:46s. Time for last 1,000,000: 2s. Last read position: chr9:32,418,167
INFO 2026-06-08 08:51:38 MarkDuplicates Tracking 874624 as yet unmatched pairs. 50003 records in RAM.
INFO 2026-06-08 08:51:41 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:14:48s. Time for last 1,000,000: 2s. Last read position: chr9:35,059,160
INFO 2026-06-08 08:51:41 MarkDuplicates Tracking 872590 as yet unmatched pairs. 47945 records in RAM.
INFO 2026-06-08 08:51:43 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:14:51s. Time for last 1,000,000: 2s. Last read position: chr9:35,712,068
INFO 2026-06-08 08:51:43 MarkDuplicates Tracking 870026 as yet unmatched pairs. 45367 records in RAM.
INFO 2026-06-08 08:51:45 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:14:53s. Time for last 1,000,000: 2s. Last read position: chr9:62,376,346
INFO 2026-06-08 08:51:45 MarkDuplicates Tracking 866855 as yet unmatched pairs. 42176 records in RAM.
INFO 2026-06-08 08:51:48 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:14:55s. Time for last 1,000,000: 2s. Last read position: chr9:76,708,729
INFO 2026-06-08 08:51:48 MarkDuplicates Tracking 865085 as yet unmatched pairs. 40380 records in RAM.
INFO 2026-06-08 08:51:52 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:14:59s. Time for last 1,000,000: 3s. Last read position: chr9:88,016,748
INFO 2026-06-08 08:51:52 MarkDuplicates Tracking 862427 as yet unmatched pairs. 37693 records in RAM.
INFO 2026-06-08 08:51:54 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:15:01s. Time for last 1,000,000: 2s. Last read position: chr9:93,558,607
INFO 2026-06-08 08:51:54 MarkDuplicates Tracking 860090 as yet unmatched pairs. 35338 records in RAM.
INFO 2026-06-08 08:51:56 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:15:04s. Time for last 1,000,000: 2s. Last read position: chr9:99,828,872
INFO 2026-06-08 08:51:56 MarkDuplicates Tracking 857485 as yet unmatched pairs. 32702 records in RAM.
INFO 2026-06-08 08:51:59 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:15:06s. Time for last 1,000,000: 2s. Last read position: chr9:109,428,631
INFO 2026-06-08 08:51:59 MarkDuplicates Tracking 855192 as yet unmatched pairs. 30391 records in RAM.
INFO 2026-06-08 08:52:02 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:15:09s. Time for last 1,000,000: 2s. Last read position: chr9:114,168,484
INFO 2026-06-08 08:52:02 MarkDuplicates Tracking 852578 as yet unmatched pairs. 27744 records in RAM.
INFO 2026-06-08 08:52:06 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:15:13s. Time for last 1,000,000: 3s. Last read position: chr9:121,310,759
INFO 2026-06-08 08:52:06 MarkDuplicates Tracking 850594 as yet unmatched pairs. 25737 records in RAM.
INFO 2026-06-08 08:52:08 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:15:15s. Time for last 1,000,000: 2s. Last read position: chr9:125,238,738
INFO 2026-06-08 08:52:08 MarkDuplicates Tracking 847971 as yet unmatched pairs. 23087 records in RAM.
INFO 2026-06-08 08:52:10 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:15:17s. Time for last 1,000,000: 2s. Last read position: chr9:127,935,552
INFO 2026-06-08 08:52:10 MarkDuplicates Tracking 844722 as yet unmatched pairs. 19824 records in RAM.
INFO 2026-06-08 08:52:12 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:15:19s. Time for last 1,000,000: 2s. Last read position: chr9:128,615,630
INFO 2026-06-08 08:52:12 MarkDuplicates Tracking 842233 as yet unmatched pairs. 17321 records in RAM.
INFO 2026-06-08 08:52:14 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:15:21s. Time for last 1,000,000: 2s. Last read position: chr9:130,372,357
INFO 2026-06-08 08:52:14 MarkDuplicates Tracking 839223 as yet unmatched pairs. 14294 records in RAM.
INFO 2026-06-08 08:52:17 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:15:24s. Time for last 1,000,000: 2s. Last read position: chr9:132,264,397
INFO 2026-06-08 08:52:17 MarkDuplicates Tracking 836684 as yet unmatched pairs. 11736 records in RAM.
INFO 2026-06-08 08:52:21 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:15:28s. Time for last 1,000,000: 3s. Last read position: chr9:134,691,039
INFO 2026-06-08 08:52:21 MarkDuplicates Tracking 834329 as yet unmatched pairs. 9366 records in RAM.
INFO 2026-06-08 08:52:23 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:15:31s. Time for last 1,000,000: 2s. Last read position: chr9:136,475,157
INFO 2026-06-08 08:52:23 MarkDuplicates Tracking 831495 as yet unmatched pairs. 6503 records in RAM.
INFO 2026-06-08 08:52:26 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:15:33s. Time for last 1,000,000: 2s. Last read position: chr9:137,017,822
INFO 2026-06-08 08:52:26 MarkDuplicates Tracking 828326 as yet unmatched pairs. 3320 records in RAM.
INFO 2026-06-08 08:52:28 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:15:35s. Time for last 1,000,000: 2s. Last read position: chr9:137,811,541
INFO 2026-06-08 08:52:28 MarkDuplicates Tracking 825191 as yet unmatched pairs. 163 records in RAM.
INFO 2026-06-08 08:52:31 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:15:38s. Time for last 1,000,000: 2s. Last read position: chr10:5,796,769
INFO 2026-06-08 08:52:31 MarkDuplicates Tracking 822919 as yet unmatched pairs. 53235 records in RAM.
INFO 2026-06-08 08:52:34 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:15:41s. Time for last 1,000,000: 2s. Last read position: chr10:16,752,561
INFO 2026-06-08 08:52:34 MarkDuplicates Tracking 820965 as yet unmatched pairs. 51259 records in RAM.
INFO 2026-06-08 08:52:37 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:15:44s. Time for last 1,000,000: 3s. Last read position: chr10:24,595,733
INFO 2026-06-08 08:52:37 MarkDuplicates Tracking 818246 as yet unmatched pairs. 48510 records in RAM.
INFO 2026-06-08 08:52:40 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:15:47s. Time for last 1,000,000: 2s. Last read position: chr10:30,439,120
INFO 2026-06-08 08:52:40 MarkDuplicates Tracking 815693 as yet unmatched pairs. 45939 records in RAM.
INFO 2026-06-08 08:52:42 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:15:50s. Time for last 1,000,000: 2s. Last read position: chr10:32,034,029
INFO 2026-06-08 08:52:42 MarkDuplicates Tracking 814824 as yet unmatched pairs. 45047 records in RAM.
INFO 2026-06-08 08:52:45 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:15:52s. Time for last 1,000,000: 2s. Last read position: chr10:34,336,217
INFO 2026-06-08 08:52:45 MarkDuplicates Tracking 811305 as yet unmatched pairs. 41509 records in RAM.
INFO 2026-06-08 08:52:46 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:15:54s. Time for last 1,000,000: 1s. Last read position: chr10:46,014,469
INFO 2026-06-08 08:52:46 MarkDuplicates Tracking 811708 as yet unmatched pairs. 41892 records in RAM.
INFO 2026-06-08 08:52:48 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:15:56s. Time for last 1,000,000: 1s. Last read position: chr10:62,092,614
INFO 2026-06-08 08:52:48 MarkDuplicates Tracking 806774 as yet unmatched pairs. 36930 records in RAM.
INFO 2026-06-08 08:52:51 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:15:58s. Time for last 1,000,000: 2s. Last read position: chr10:70,885,199
INFO 2026-06-08 08:52:51 MarkDuplicates Tracking 804540 as yet unmatched pairs. 34668 records in RAM.
INFO 2026-06-08 08:52:53 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:16:00s. Time for last 1,000,000: 2s. Last read position: chr10:74,407,736
INFO 2026-06-08 08:52:53 MarkDuplicates Tracking 801630 as yet unmatched pairs. 31737 records in RAM.
INFO 2026-06-08 08:52:56 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:16:03s. Time for last 1,000,000: 2s. Last read position: chr10:77,926,233
INFO 2026-06-08 08:52:56 MarkDuplicates Tracking 799750 as yet unmatched pairs. 29836 records in RAM.
INFO 2026-06-08 08:52:58 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:16:05s. Time for last 1,000,000: 2s. Last read position: chr10:78,035,689
INFO 2026-06-08 08:52:58 MarkDuplicates Tracking 836441 as yet unmatched pairs. 66496 records in RAM.
INFO 2026-06-08 08:53:01 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:16:08s. Time for last 1,000,000: 2s. Last read position: chr10:78,040,203
INFO 2026-06-08 08:53:01 MarkDuplicates Tracking 795441 as yet unmatched pairs. 25486 records in RAM.
INFO 2026-06-08 08:53:05 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:16:12s. Time for last 1,000,000: 3s. Last read position: chr10:79,349,694
INFO 2026-06-08 08:53:05 MarkDuplicates Tracking 794170 as yet unmatched pairs. 24193 records in RAM.
INFO 2026-06-08 08:53:07 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:16:14s. Time for last 1,000,000: 2s. Last read position: chr10:80,168,987
INFO 2026-06-08 08:53:07 MarkDuplicates Tracking 791893 as yet unmatched pairs. 21900 records in RAM.
INFO 2026-06-08 08:53:09 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:16:16s. Time for last 1,000,000: 2s. Last read position: chr10:87,152,019
INFO 2026-06-08 08:53:09 MarkDuplicates Tracking 787439 as yet unmatched pairs. 17409 records in RAM.
INFO 2026-06-08 08:53:11 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:16:19s. Time for last 1,000,000: 2s. Last read position: chr10:93,325,838
INFO 2026-06-08 08:53:11 MarkDuplicates Tracking 785018 as yet unmatched pairs. 14957 records in RAM.
INFO 2026-06-08 08:53:13 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:16:21s. Time for last 1,000,000: 2s. Last read position: chr10:96,955,520
INFO 2026-06-08 08:53:13 MarkDuplicates Tracking 782685 as yet unmatched pairs. 12599 records in RAM.
INFO 2026-06-08 08:53:15 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:16:23s. Time for last 1,000,000: 1s. Last read position: chr10:102,139,771
INFO 2026-06-08 08:53:15 MarkDuplicates Tracking 780114 as yet unmatched pairs. 10004 records in RAM.
INFO 2026-06-08 08:53:19 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:16:26s. Time for last 1,000,000: 3s. Last read position: chr10:104,259,648
INFO 2026-06-08 08:53:19 MarkDuplicates Tracking 777896 as yet unmatched pairs. 7767 records in RAM.
INFO 2026-06-08 08:53:21 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:16:28s. Time for last 1,000,000: 2s. Last read position: chr10:118,009,025
INFO 2026-06-08 08:53:21 MarkDuplicates Tracking 775290 as yet unmatched pairs. 5141 records in RAM.
INFO 2026-06-08 08:53:23 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:16:30s. Time for last 1,000,000: 2s. Last read position: chr10:122,592,300
INFO 2026-06-08 08:53:23 MarkDuplicates Tracking 773231 as yet unmatched pairs. 3065 records in RAM.
INFO 2026-06-08 08:53:25 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:16:32s. Time for last 1,000,000: 1s. Last read position: chr10:133,268,078
INFO 2026-06-08 08:53:25 MarkDuplicates Tracking 770873 as yet unmatched pairs. 688 records in RAM.
INFO 2026-06-08 08:53:28 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:16:35s. Time for last 1,000,000: 2s. Last read position: chr11:319,909
INFO 2026-06-08 08:53:28 MarkDuplicates Tracking 774088 as yet unmatched pairs. 100003 records in RAM.
INFO 2026-06-08 08:53:30 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:16:37s. Time for last 1,000,000: 2s. Last read position: chr11:674,740
INFO 2026-06-08 08:53:30 MarkDuplicates Tracking 765953 as yet unmatched pairs. 91850 records in RAM.
INFO 2026-06-08 08:53:32 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:16:39s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,175
INFO 2026-06-08 08:53:32 MarkDuplicates Tracking 763243 as yet unmatched pairs. 89126 records in RAM.
INFO 2026-06-08 08:53:33 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:16:41s. Time for last 1,000,000: 1s. Last read position: chr11:1,925,103
INFO 2026-06-08 08:53:33 MarkDuplicates Tracking 761745 as yet unmatched pairs. 87621 records in RAM.
INFO 2026-06-08 08:53:35 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:16:43s. Time for last 1,000,000: 2s. Last read position: chr11:5,610,740
INFO 2026-06-08 08:53:35 MarkDuplicates Tracking 757949 as yet unmatched pairs. 83813 records in RAM.
INFO 2026-06-08 08:53:37 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:16:45s. Time for last 1,000,000: 2s. Last read position: chr11:8,699,275
INFO 2026-06-08 08:53:37 MarkDuplicates Tracking 755665 as yet unmatched pairs. 81520 records in RAM.
INFO 2026-06-08 08:53:41 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:16:48s. Time for last 1,000,000: 3s. Last read position: chr11:10,854,405
INFO 2026-06-08 08:53:41 MarkDuplicates Tracking 753108 as yet unmatched pairs. 78952 records in RAM.
INFO 2026-06-08 08:53:44 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:16:51s. Time for last 1,000,000: 3s. Last read position: chr11:17,129,300
INFO 2026-06-08 08:53:44 MarkDuplicates Tracking 750580 as yet unmatched pairs. 76403 records in RAM.
INFO 2026-06-08 08:53:46 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:16:53s. Time for last 1,000,000: 2s. Last read position: chr11:33,058,990
INFO 2026-06-08 08:53:46 MarkDuplicates Tracking 748225 as yet unmatched pairs. 74029 records in RAM.
INFO 2026-06-08 08:53:48 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:16:55s. Time for last 1,000,000: 1s. Last read position: chr11:41,021,157
INFO 2026-06-08 08:53:48 MarkDuplicates Tracking 745758 as yet unmatched pairs. 71544 records in RAM.
INFO 2026-06-08 08:53:50 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:16:57s. Time for last 1,000,000: 2s. Last read position: chr11:46,382,614
INFO 2026-06-08 08:53:50 MarkDuplicates Tracking 743621 as yet unmatched pairs. 69399 records in RAM.
INFO 2026-06-08 08:53:53 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:17:00s. Time for last 1,000,000: 2s. Last read position: chr11:47,839,982
INFO 2026-06-08 08:53:53 MarkDuplicates Tracking 740813 as yet unmatched pairs. 66580 records in RAM.
INFO 2026-06-08 08:53:55 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:17:02s. Time for last 1,000,000: 2s. Last read position: chr11:57,796,920
INFO 2026-06-08 08:53:55 MarkDuplicates Tracking 739030 as yet unmatched pairs. 64792 records in RAM.
INFO 2026-06-08 08:53:58 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:17:05s. Time for last 1,000,000: 2s. Last read position: chr11:61,325,668
INFO 2026-06-08 08:53:58 MarkDuplicates Tracking 735709 as yet unmatched pairs. 61464 records in RAM.
INFO 2026-06-08 08:53:59 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:17:07s. Time for last 1,000,000: 1s. Last read position: chr11:62,518,115
INFO 2026-06-08 08:53:59 MarkDuplicates Tracking 734370 as yet unmatched pairs. 60106 records in RAM.
INFO 2026-06-08 08:54:02 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:17:09s. Time for last 1,000,000: 2s. Last read position: chr11:62,525,459
INFO 2026-06-08 08:54:02 MarkDuplicates Tracking 732058 as yet unmatched pairs. 57789 records in RAM.
INFO 2026-06-08 08:54:04 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:17:12s. Time for last 1,000,000: 2s. Last read position: chr11:62,531,325
INFO 2026-06-08 08:54:04 MarkDuplicates Tracking 730253 as yet unmatched pairs. 55979 records in RAM.
INFO 2026-06-08 08:54:07 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:17:14s. Time for last 1,000,000: 2s. Last read position: chr11:62,663,279
INFO 2026-06-08 08:54:07 MarkDuplicates Tracking 726490 as yet unmatched pairs. 52212 records in RAM.
INFO 2026-06-08 08:54:09 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:17:16s. Time for last 1,000,000: 1s. Last read position: chr11:64,195,723
INFO 2026-06-08 08:54:09 MarkDuplicates Tracking 724213 as yet unmatched pairs. 49924 records in RAM.
INFO 2026-06-08 08:54:11 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:17:18s. Time for last 1,000,000: 1s. Last read position: chr11:64,770,015
INFO 2026-06-08 08:54:11 MarkDuplicates Tracking 721149 as yet unmatched pairs. 46840 records in RAM.
INFO 2026-06-08 08:54:13 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:17:20s. Time for last 1,000,000: 2s. Last read position: chr11:65,387,066
INFO 2026-06-08 08:54:13 MarkDuplicates Tracking 718160 as yet unmatched pairs. 43833 records in RAM.
INFO 2026-06-08 08:54:15 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:17:22s. Time for last 1,000,000: 1s. Last read position: chr11:65,654,702
INFO 2026-06-08 08:54:15 MarkDuplicates Tracking 716288 as yet unmatched pairs. 41893 records in RAM.
INFO 2026-06-08 08:54:16 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:17:24s. Time for last 1,000,000: 1s. Last read position: chr11:66,053,090
INFO 2026-06-08 08:54:16 MarkDuplicates Tracking 712503 as yet unmatched pairs. 38101 records in RAM.
INFO 2026-06-08 08:54:18 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:17:25s. Time for last 1,000,000: 1s. Last read position: chr11:67,243,064
INFO 2026-06-08 08:54:18 MarkDuplicates Tracking 709806 as yet unmatched pairs. 35392 records in RAM.
INFO 2026-06-08 08:54:20 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:17:28s. Time for last 1,000,000: 2s. Last read position: chr11:67,682,741
INFO 2026-06-08 08:54:20 MarkDuplicates Tracking 706737 as yet unmatched pairs. 32316 records in RAM.
INFO 2026-06-08 08:54:22 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:17:30s. Time for last 1,000,000: 2s. Last read position: chr11:69,643,049
INFO 2026-06-08 08:54:22 MarkDuplicates Tracking 706029 as yet unmatched pairs. 31587 records in RAM.
INFO 2026-06-08 08:54:24 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:17:31s. Time for last 1,000,000: 1s. Last read position: chr11:72,023,131
INFO 2026-06-08 08:54:24 MarkDuplicates Tracking 701668 as yet unmatched pairs. 27213 records in RAM.
INFO 2026-06-08 08:54:26 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:17:33s. Time for last 1,000,000: 1s. Last read position: chr11:75,162,658
INFO 2026-06-08 08:54:26 MarkDuplicates Tracking 698828 as yet unmatched pairs. 24353 records in RAM.
INFO 2026-06-08 08:54:28 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:17:35s. Time for last 1,000,000: 1s. Last read position: chr11:77,878,930
INFO 2026-06-08 08:54:28 MarkDuplicates Tracking 696085 as yet unmatched pairs. 21602 records in RAM.
INFO 2026-06-08 08:54:29 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:17:37s. Time for last 1,000,000: 1s. Last read position: chr11:90,283,813
INFO 2026-06-08 08:54:29 MarkDuplicates Tracking 693600 as yet unmatched pairs. 19100 records in RAM.
INFO 2026-06-08 08:54:31 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:17:39s. Time for last 1,000,000: 1s. Last read position: chr11:102,227,521
INFO 2026-06-08 08:54:31 MarkDuplicates Tracking 693046 as yet unmatched pairs. 18537 records in RAM.
INFO 2026-06-08 08:54:33 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:17:41s. Time for last 1,000,000: 2s. Last read position: chr11:111,753,553
INFO 2026-06-08 08:54:33 MarkDuplicates Tracking 688718 as yet unmatched pairs. 14192 records in RAM.
INFO 2026-06-08 08:54:35 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:17:42s. Time for last 1,000,000: 1s. Last read position: chr11:117,203,459
INFO 2026-06-08 08:54:35 MarkDuplicates Tracking 688268 as yet unmatched pairs. 13732 records in RAM.
INFO 2026-06-08 08:54:37 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:17:44s. Time for last 1,000,000: 1s. Last read position: chr11:118,628,434
INFO 2026-06-08 08:54:37 MarkDuplicates Tracking 683857 as yet unmatched pairs. 9303 records in RAM.
INFO 2026-06-08 08:54:39 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:17:46s. Time for last 1,000,000: 1s. Last read position: chr11:119,420,182
INFO 2026-06-08 08:54:39 MarkDuplicates Tracking 683008 as yet unmatched pairs. 8446 records in RAM.
INFO 2026-06-08 08:54:41 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:17:48s. Time for last 1,000,000: 1s. Last read position: chr11:124,638,567
INFO 2026-06-08 08:54:41 MarkDuplicates Tracking 678707 as yet unmatched pairs. 4129 records in RAM.
INFO 2026-06-08 08:54:42 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:17:50s. Time for last 1,000,000: 1s. Last read position: chr11:130,159,989
INFO 2026-06-08 08:54:42 MarkDuplicates Tracking 676236 as yet unmatched pairs. 1647 records in RAM.
INFO 2026-06-08 08:54:45 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:17:52s. Time for last 1,000,000: 2s. Last read position: chr12:1,780,563
INFO 2026-06-08 08:54:45 MarkDuplicates Tracking 673964 as yet unmatched pairs. 77926 records in RAM.
INFO 2026-06-08 08:54:47 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:17:54s. Time for last 1,000,000: 1s. Last read position: chr12:6,492,288
INFO 2026-06-08 08:54:47 MarkDuplicates Tracking 671109 as yet unmatched pairs. 75059 records in RAM.
INFO 2026-06-08 08:54:49 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:17:56s. Time for last 1,000,000: 1s. Last read position: chr12:6,939,089
INFO 2026-06-08 08:54:49 MarkDuplicates Tracking 668728 as yet unmatched pairs. 72669 records in RAM.
INFO 2026-06-08 08:54:51 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:17:58s. Time for last 1,000,000: 1s. Last read position: chr12:8,049,432
INFO 2026-06-08 08:54:51 MarkDuplicates Tracking 665937 as yet unmatched pairs. 69868 records in RAM.
INFO 2026-06-08 08:54:52 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:18:00s. Time for last 1,000,000: 1s. Last read position: chr12:12,162,262
INFO 2026-06-08 08:54:52 MarkDuplicates Tracking 663572 as yet unmatched pairs. 67485 records in RAM.
INFO 2026-06-08 08:54:54 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:18:01s. Time for last 1,000,000: 1s. Last read position: chr12:21,475,752
INFO 2026-06-08 08:54:54 MarkDuplicates Tracking 661382 as yet unmatched pairs. 65278 records in RAM.
INFO 2026-06-08 08:54:56 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:18:03s. Time for last 1,000,000: 1s. Last read position: chr12:42,097,951
INFO 2026-06-08 08:54:56 MarkDuplicates Tracking 658888 as yet unmatched pairs. 62765 records in RAM.
INFO 2026-06-08 08:54:58 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:18:05s. Time for last 1,000,000: 1s. Last read position: chr12:47,964,208
INFO 2026-06-08 08:54:58 MarkDuplicates Tracking 657329 as yet unmatched pairs. 61177 records in RAM.
INFO 2026-06-08 08:55:00 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:18:07s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,237
INFO 2026-06-08 08:55:00 MarkDuplicates Tracking 655828 as yet unmatched pairs. 59676 records in RAM.
INFO 2026-06-08 08:55:02 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:18:09s. Time for last 1,000,000: 2s. Last read position: chr12:49,759,234
INFO 2026-06-08 08:55:02 MarkDuplicates Tracking 655208 as yet unmatched pairs. 59051 records in RAM.
INFO 2026-06-08 08:55:04 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:18:11s. Time for last 1,000,000: 2s. Last read position: chr12:52,054,803
INFO 2026-06-08 08:55:04 MarkDuplicates Tracking 650925 as yet unmatched pairs. 54756 records in RAM.
INFO 2026-06-08 08:55:06 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:18:13s. Time for last 1,000,000: 2s. Last read position: chr12:52,952,292
INFO 2026-06-08 08:55:06 MarkDuplicates Tracking 647889 as yet unmatched pairs. 51699 records in RAM.
INFO 2026-06-08 08:55:08 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:18:15s. Time for last 1,000,000: 1s. Last read position: chr12:53,446,046
INFO 2026-06-08 08:55:08 MarkDuplicates Tracking 645103 as yet unmatched pairs. 48898 records in RAM.
INFO 2026-06-08 08:55:09 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:18:16s. Time for last 1,000,000: 1s. Last read position: chr12:54,397,405
INFO 2026-06-08 08:55:09 MarkDuplicates Tracking 642673 as yet unmatched pairs. 46458 records in RAM.
INFO 2026-06-08 08:55:11 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:18:18s. Time for last 1,000,000: 1s. Last read position: chr12:56,117,492
INFO 2026-06-08 08:55:11 MarkDuplicates Tracking 639867 as yet unmatched pairs. 43644 records in RAM.
INFO 2026-06-08 08:55:13 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:18:20s. Time for last 1,000,000: 1s. Last read position: chr12:56,582,094
INFO 2026-06-08 08:55:13 MarkDuplicates Tracking 637839 as yet unmatched pairs. 41606 records in RAM.
INFO 2026-06-08 08:55:15 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:18:22s. Time for last 1,000,000: 1s. Last read position: chr12:57,094,594
INFO 2026-06-08 08:55:15 MarkDuplicates Tracking 635661 as yet unmatched pairs. 39423 records in RAM.
INFO 2026-06-08 08:55:16 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:18:24s. Time for last 1,000,000: 1s. Last read position: chr12:57,173,957
INFO 2026-06-08 08:55:16 MarkDuplicates Tracking 632996 as yet unmatched pairs. 36747 records in RAM.
INFO 2026-06-08 08:55:18 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:18:26s. Time for last 1,000,000: 1s. Last read position: chr12:57,235,477
INFO 2026-06-08 08:55:18 MarkDuplicates Tracking 630082 as yet unmatched pairs. 33824 records in RAM.
INFO 2026-06-08 08:55:20 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:18:27s. Time for last 1,000,000: 1s. Last read position: chr12:62,467,297
INFO 2026-06-08 08:55:20 MarkDuplicates Tracking 627537 as yet unmatched pairs. 31270 records in RAM.
INFO 2026-06-08 08:55:22 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:18:29s. Time for last 1,000,000: 1s. Last read position: chr12:69,589,663
INFO 2026-06-08 08:55:22 MarkDuplicates Tracking 625838 as yet unmatched pairs. 29552 records in RAM.
INFO 2026-06-08 08:55:24 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:18:31s. Time for last 1,000,000: 1s. Last read position: chr12:76,369,726
INFO 2026-06-08 08:55:24 MarkDuplicates Tracking 622778 as yet unmatched pairs. 26473 records in RAM.
INFO 2026-06-08 08:55:26 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:18:33s. Time for last 1,000,000: 1s. Last read position: chr12:92,145,445
INFO 2026-06-08 08:55:26 MarkDuplicates Tracking 620525 as yet unmatched pairs. 24198 records in RAM.
INFO 2026-06-08 08:55:28 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:18:35s. Time for last 1,000,000: 2s. Last read position: chr12:100,083,066
INFO 2026-06-08 08:55:28 MarkDuplicates Tracking 617993 as yet unmatched pairs. 21653 records in RAM.
INFO 2026-06-08 08:55:30 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:18:38s. Time for last 1,000,000: 2s. Last read position: chr12:104,325,421
INFO 2026-06-08 08:55:30 MarkDuplicates Tracking 615816 as yet unmatched pairs. 19464 records in RAM.
INFO 2026-06-08 08:55:32 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:18:40s. Time for last 1,000,000: 1s. Last read position: chr12:110,019,302
INFO 2026-06-08 08:55:32 MarkDuplicates Tracking 613302 as yet unmatched pairs. 16930 records in RAM.
INFO 2026-06-08 08:55:34 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:18:41s. Time for last 1,000,000: 1s. Last read position: chr12:112,265,878
INFO 2026-06-08 08:55:34 MarkDuplicates Tracking 610780 as yet unmatched pairs. 14387 records in RAM.
INFO 2026-06-08 08:55:36 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:18:43s. Time for last 1,000,000: 1s. Last read position: chr12:118,079,529
INFO 2026-06-08 08:55:36 MarkDuplicates Tracking 608097 as yet unmatched pairs. 11687 records in RAM.
INFO 2026-06-08 08:55:38 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:18:45s. Time for last 1,000,000: 1s. Last read position: chr12:120,687,450
INFO 2026-06-08 08:55:38 MarkDuplicates Tracking 606051 as yet unmatched pairs. 9618 records in RAM.
INFO 2026-06-08 08:55:40 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:18:47s. Time for last 1,000,000: 1s. Last read position: chr12:122,768,877
INFO 2026-06-08 08:55:40 MarkDuplicates Tracking 602993 as yet unmatched pairs. 6544 records in RAM.
INFO 2026-06-08 08:55:41 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:18:49s. Time for last 1,000,000: 1s. Last read position: chr12:124,362,193
INFO 2026-06-08 08:55:41 MarkDuplicates Tracking 600585 as yet unmatched pairs. 4128 records in RAM.
INFO 2026-06-08 08:55:43 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:18:50s. Time for last 1,000,000: 1s. Last read position: chr12:132,570,337
INFO 2026-06-08 08:55:43 MarkDuplicates Tracking 598131 as yet unmatched pairs. 1661 records in RAM.
INFO 2026-06-08 08:55:46 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:18:53s. Time for last 1,000,000: 2s. Last read position: chr13:20,601,803
INFO 2026-06-08 08:55:46 MarkDuplicates Tracking 595428 as yet unmatched pairs. 25035 records in RAM.
INFO 2026-06-08 08:55:48 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:18:55s. Time for last 1,000,000: 2s. Last read position: chr13:27,622,654
INFO 2026-06-08 08:55:48 MarkDuplicates Tracking 594696 as yet unmatched pairs. 24292 records in RAM.
INFO 2026-06-08 08:55:51 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:18:58s. Time for last 1,000,000: 2s. Last read position: chr13:37,029,767
INFO 2026-06-08 08:55:51 MarkDuplicates Tracking 590855 as yet unmatched pairs. 20438 records in RAM.
INFO 2026-06-08 08:55:53 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:19:00s. Time for last 1,000,000: 2s. Last read position: chr13:42,302,620
INFO 2026-06-08 08:55:53 MarkDuplicates Tracking 588425 as yet unmatched pairs. 17999 records in RAM.
INFO 2026-06-08 08:55:55 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:19:02s. Time for last 1,000,000: 1s. Last read position: chr13:48,233,435
INFO 2026-06-08 08:55:55 MarkDuplicates Tracking 586895 as yet unmatched pairs. 16440 records in RAM.
INFO 2026-06-08 08:55:57 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:19:04s. Time for last 1,000,000: 1s. Last read position: chr13:72,777,459
INFO 2026-06-08 08:55:57 MarkDuplicates Tracking 584108 as yet unmatched pairs. 13633 records in RAM.
INFO 2026-06-08 08:55:59 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:19:06s. Time for last 1,000,000: 1s. Last read position: chr13:77,263,990
INFO 2026-06-08 08:55:59 MarkDuplicates Tracking 581368 as yet unmatched pairs. 10882 records in RAM.
INFO 2026-06-08 08:56:01 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:19:08s. Time for last 1,000,000: 1s. Last read position: chr13:99,562,818
INFO 2026-06-08 08:56:01 MarkDuplicates Tracking 578734 as yet unmatched pairs. 8229 records in RAM.
INFO 2026-06-08 08:56:03 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:19:10s. Time for last 1,000,000: 1s. Last read position: chr13:110,187,285
INFO 2026-06-08 08:56:03 MarkDuplicates Tracking 576510 as yet unmatched pairs. 5991 records in RAM.
INFO 2026-06-08 08:56:05 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:19:12s. Time for last 1,000,000: 1s. Last read position: chr13:110,524,064
INFO 2026-06-08 08:56:05 MarkDuplicates Tracking 573245 as yet unmatched pairs. 2722 records in RAM.
INFO 2026-06-08 08:56:07 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:19:14s. Time for last 1,000,000: 2s. Last read position: chr14:20,373,576
INFO 2026-06-08 08:56:07 MarkDuplicates Tracking 570496 as yet unmatched pairs. 48572 records in RAM.
INFO 2026-06-08 08:56:09 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:19:16s. Time for last 1,000,000: 1s. Last read position: chr14:21,525,595
INFO 2026-06-08 08:56:09 MarkDuplicates Tracking 567819 as yet unmatched pairs. 45888 records in RAM.
INFO 2026-06-08 08:56:11 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:19:18s. Time for last 1,000,000: 1s. Last read position: chr14:23,062,247
INFO 2026-06-08 08:56:11 MarkDuplicates Tracking 565257 as yet unmatched pairs. 43305 records in RAM.
INFO 2026-06-08 08:56:13 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:19:20s. Time for last 1,000,000: 1s. Last read position: chr14:24,218,197
INFO 2026-06-08 08:56:13 MarkDuplicates Tracking 562671 as yet unmatched pairs. 40707 records in RAM.
INFO 2026-06-08 08:56:14 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:19:22s. Time for last 1,000,000: 1s. Last read position: chr14:34,597,633
INFO 2026-06-08 08:56:14 MarkDuplicates Tracking 560570 as yet unmatched pairs. 38593 records in RAM.
INFO 2026-06-08 08:56:16 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:19:23s. Time for last 1,000,000: 1s. Last read position: chr14:49,618,927
INFO 2026-06-08 08:56:16 MarkDuplicates Tracking 558240 as yet unmatched pairs. 36212 records in RAM.
INFO 2026-06-08 08:56:18 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:19:25s. Time for last 1,000,000: 1s. Last read position: chr14:53,949,945
INFO 2026-06-08 08:56:18 MarkDuplicates Tracking 555471 as yet unmatched pairs. 33403 records in RAM.
INFO 2026-06-08 08:56:20 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:19:27s. Time for last 1,000,000: 2s. Last read position: chr14:58,306,014
INFO 2026-06-08 08:56:20 MarkDuplicates Tracking 552936 as yet unmatched pairs. 30849 records in RAM.
INFO 2026-06-08 08:56:22 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:19:29s. Time for last 1,000,000: 1s. Last read position: chr14:64,742,000
INFO 2026-06-08 08:56:22 MarkDuplicates Tracking 550420 as yet unmatched pairs. 28326 records in RAM.
INFO 2026-06-08 08:56:24 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:19:31s. Time for last 1,000,000: 1s. Last read position: chr14:68,885,470
INFO 2026-06-08 08:56:24 MarkDuplicates Tracking 549499 as yet unmatched pairs. 27396 records in RAM.
INFO 2026-06-08 08:56:26 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:19:33s. Time for last 1,000,000: 1s. Last read position: chr14:73,297,214
INFO 2026-06-08 08:56:26 MarkDuplicates Tracking 546143 as yet unmatched pairs. 24019 records in RAM.
INFO 2026-06-08 08:56:27 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:19:35s. Time for last 1,000,000: 1s. Last read position: chr14:75,147,664
INFO 2026-06-08 08:56:27 MarkDuplicates Tracking 543094 as yet unmatched pairs. 20961 records in RAM.
INFO 2026-06-08 08:56:29 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:19:36s. Time for last 1,000,000: 1s. Last read position: chr14:82,692,763
INFO 2026-06-08 08:56:29 MarkDuplicates Tracking 540212 as yet unmatched pairs. 18066 records in RAM.
INFO 2026-06-08 08:56:31 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:19:38s. Time for last 1,000,000: 1s. Last read position: chr14:93,251,498
INFO 2026-06-08 08:56:31 MarkDuplicates Tracking 537864 as yet unmatched pairs. 15698 records in RAM.
INFO 2026-06-08 08:56:32 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:19:40s. Time for last 1,000,000: 1s. Last read position: chr14:101,818,986
INFO 2026-06-08 08:56:32 MarkDuplicates Tracking 536240 as yet unmatched pairs. 14055 records in RAM.
INFO 2026-06-08 08:56:34 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:19:41s. Time for last 1,000,000: 1s. Last read position: chr14:102,431,804
INFO 2026-06-08 08:56:34 MarkDuplicates Tracking 532821 as yet unmatched pairs. 10626 records in RAM.
INFO 2026-06-08 08:56:36 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:19:43s. Time for last 1,000,000: 2s. Last read position: chr14:104,714,323
INFO 2026-06-08 08:56:36 MarkDuplicates Tracking 531418 as yet unmatched pairs. 9213 records in RAM.
INFO 2026-06-08 08:56:37 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:19:45s. Time for last 1,000,000: 1s. Last read position: chr14:104,944,551
INFO 2026-06-08 08:56:37 MarkDuplicates Tracking 531178 as yet unmatched pairs. 8969 records in RAM.
INFO 2026-06-08 08:56:39 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:19:46s. Time for last 1,000,000: 1s. Last read position: chr14:104,953,600
INFO 2026-06-08 08:56:39 MarkDuplicates Tracking 525511 as yet unmatched pairs. 3295 records in RAM.
INFO 2026-06-08 08:56:41 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:19:48s. Time for last 1,000,000: 1s. Last read position: chr14:105,741,636
INFO 2026-06-08 08:56:41 MarkDuplicates Tracking 524589 as yet unmatched pairs. 2359 records in RAM.
INFO 2026-06-08 08:56:43 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:19:50s. Time for last 1,000,000: 2s. Last read position: chr15:28,292,905
INFO 2026-06-08 08:56:43 MarkDuplicates Tracking 521092 as yet unmatched pairs. 51653 records in RAM.
INFO 2026-06-08 08:56:45 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:19:52s. Time for last 1,000,000: 1s. Last read position: chr15:32,732,006
INFO 2026-06-08 08:56:45 MarkDuplicates Tracking 521489 as yet unmatched pairs. 52047 records in RAM.
INFO 2026-06-08 08:56:47 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:19:54s. Time for last 1,000,000: 1s. Last read position: chr15:34,934,570
INFO 2026-06-08 08:56:47 MarkDuplicates Tracking 516457 as yet unmatched pairs. 47005 records in RAM.
INFO 2026-06-08 08:56:49 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:19:56s. Time for last 1,000,000: 1s. Last read position: chr15:40,288,740
INFO 2026-06-08 08:56:49 MarkDuplicates Tracking 513680 as yet unmatched pairs. 44225 records in RAM.
INFO 2026-06-08 08:56:50 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:19:57s. Time for last 1,000,000: 1s. Last read position: chr15:41,736,684
INFO 2026-06-08 08:56:50 MarkDuplicates Tracking 511160 as yet unmatched pairs. 41701 records in RAM.
INFO 2026-06-08 08:56:52 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:19:59s. Time for last 1,000,000: 2s. Last read position: chr15:43,527,617
INFO 2026-06-08 08:56:52 MarkDuplicates Tracking 508443 as yet unmatched pairs. 38980 records in RAM.
INFO 2026-06-08 08:56:54 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:20:01s. Time for last 1,000,000: 1s. Last read position: chr15:43,793,831
INFO 2026-06-08 08:56:54 MarkDuplicates Tracking 508697 as yet unmatched pairs. 39229 records in RAM.
INFO 2026-06-08 08:56:56 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:20:03s. Time for last 1,000,000: 1s. Last read position: chr15:45,662,066
INFO 2026-06-08 08:56:56 MarkDuplicates Tracking 503955 as yet unmatched pairs. 34484 records in RAM.
INFO 2026-06-08 08:56:58 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:20:05s. Time for last 1,000,000: 1s. Last read position: chr15:51,488,613
INFO 2026-06-08 08:56:58 MarkDuplicates Tracking 501356 as yet unmatched pairs. 31871 records in RAM.
INFO 2026-06-08 08:56:59 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:20:07s. Time for last 1,000,000: 1s. Last read position: chr15:58,673,740
INFO 2026-06-08 08:56:59 MarkDuplicates Tracking 499310 as yet unmatched pairs. 29808 records in RAM.
INFO 2026-06-08 08:57:01 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:20:08s. Time for last 1,000,000: 1s. Last read position: chr15:61,964,798
INFO 2026-06-08 08:57:01 MarkDuplicates Tracking 497142 as yet unmatched pairs. 27619 records in RAM.
INFO 2026-06-08 08:57:03 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:20:10s. Time for last 1,000,000: 1s. Last read position: chr15:64,155,862
INFO 2026-06-08 08:57:03 MarkDuplicates Tracking 494901 as yet unmatched pairs. 25374 records in RAM.
INFO 2026-06-08 08:57:04 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:20:12s. Time for last 1,000,000: 1s. Last read position: chr15:66,501,499
INFO 2026-06-08 08:57:04 MarkDuplicates Tracking 493727 as yet unmatched pairs. 24193 records in RAM.
INFO 2026-06-08 08:57:07 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:20:14s. Time for last 1,000,000: 2s. Last read position: chr15:71,085,736
INFO 2026-06-08 08:57:07 MarkDuplicates Tracking 488860 as yet unmatched pairs. 19311 records in RAM.
INFO 2026-06-08 08:57:09 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:20:16s. Time for last 1,000,000: 1s. Last read position: chr15:73,994,794
INFO 2026-06-08 08:57:09 MarkDuplicates Tracking 486893 as yet unmatched pairs. 17337 records in RAM.
INFO 2026-06-08 08:57:10 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:20:17s. Time for last 1,000,000: 1s. Last read position: chr15:75,206,697
INFO 2026-06-08 08:57:10 MarkDuplicates Tracking 484149 as yet unmatched pairs. 14588 records in RAM.
INFO 2026-06-08 08:57:12 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:20:19s. Time for last 1,000,000: 1s. Last read position: chr15:78,025,386
INFO 2026-06-08 08:57:12 MarkDuplicates Tracking 481093 as yet unmatched pairs. 11524 records in RAM.
INFO 2026-06-08 08:57:14 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:20:21s. Time for last 1,000,000: 1s. Last read position: chr15:82,810,031
INFO 2026-06-08 08:57:14 MarkDuplicates Tracking 478635 as yet unmatched pairs. 9049 records in RAM.
INFO 2026-06-08 08:57:15 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:20:22s. Time for last 1,000,000: 1s. Last read position: chr15:88,901,613
INFO 2026-06-08 08:57:15 MarkDuplicates Tracking 477203 as yet unmatched pairs. 7601 records in RAM.
INFO 2026-06-08 08:57:17 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:20:24s. Time for last 1,000,000: 1s. Last read position: chr15:90,477,804
INFO 2026-06-08 08:57:17 MarkDuplicates Tracking 474065 as yet unmatched pairs. 4452 records in RAM.
INFO 2026-06-08 08:57:19 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:20:26s. Time for last 1,000,000: 1s. Last read position: chr15:99,129,891
INFO 2026-06-08 08:57:19 MarkDuplicates Tracking 471608 as yet unmatched pairs. 1984 records in RAM.
INFO 2026-06-08 08:57:21 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:20:28s. Time for last 1,000,000: 2s. Last read position: chr16:371,986
INFO 2026-06-08 08:57:21 MarkDuplicates Tracking 468743 as yet unmatched pairs. 78456 records in RAM.
INFO 2026-06-08 08:57:22 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:20:30s. Time for last 1,000,000: 1s. Last read position: chr16:1,209,105
INFO 2026-06-08 08:57:22 MarkDuplicates Tracking 465441 as yet unmatched pairs. 75133 records in RAM.
INFO 2026-06-08 08:57:24 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:20:31s. Time for last 1,000,000: 1s. Last read position: chr16:2,036,954
INFO 2026-06-08 08:57:24 MarkDuplicates Tracking 463197 as yet unmatched pairs. 72885 records in RAM.
INFO 2026-06-08 08:57:26 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:20:33s. Time for last 1,000,000: 1s. Last read position: chr16:2,597,172
INFO 2026-06-08 08:57:26 MarkDuplicates Tracking 459410 as yet unmatched pairs. 69084 records in RAM.
INFO 2026-06-08 08:57:27 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:20:35s. Time for last 1,000,000: 1s. Last read position: chr16:2,971,596
INFO 2026-06-08 08:57:27 MarkDuplicates Tracking 457133 as yet unmatched pairs. 66802 records in RAM.
INFO 2026-06-08 08:57:29 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:20:36s. Time for last 1,000,000: 1s. Last read position: chr16:4,114,733
INFO 2026-06-08 08:57:29 MarkDuplicates Tracking 454260 as yet unmatched pairs. 63924 records in RAM.
INFO 2026-06-08 08:57:31 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:20:38s. Time for last 1,000,000: 1s. Last read position: chr16:8,921,156
INFO 2026-06-08 08:57:31 MarkDuplicates Tracking 451945 as yet unmatched pairs. 61600 records in RAM.
INFO 2026-06-08 08:57:32 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:20:40s. Time for last 1,000,000: 1s. Last read position: chr16:14,848,917
INFO 2026-06-08 08:57:32 MarkDuplicates Tracking 449285 as yet unmatched pairs. 58934 records in RAM.
INFO 2026-06-08 08:57:34 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:20:41s. Time for last 1,000,000: 1s. Last read position: chr16:15,704,110
INFO 2026-06-08 08:57:34 MarkDuplicates Tracking 449016 as yet unmatched pairs. 58663 records in RAM.
INFO 2026-06-08 08:57:36 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:20:43s. Time for last 1,000,000: 1s. Last read position: chr16:15,741,550
INFO 2026-06-08 08:57:36 MarkDuplicates Tracking 447156 as yet unmatched pairs. 56801 records in RAM.
INFO 2026-06-08 08:57:37 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:20:45s. Time for last 1,000,000: 1s. Last read position: chr16:16,138,500
INFO 2026-06-08 08:57:37 MarkDuplicates Tracking 442677 as yet unmatched pairs. 52310 records in RAM.
INFO 2026-06-08 08:57:39 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:20:46s. Time for last 1,000,000: 1s. Last read position: chr16:18,350,074
INFO 2026-06-08 08:57:39 MarkDuplicates Tracking 442255 as yet unmatched pairs. 51887 records in RAM.
INFO 2026-06-08 08:57:40 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:20:48s. Time for last 1,000,000: 1s. Last read position: chr16:18,984,066
INFO 2026-06-08 08:57:40 MarkDuplicates Tracking 440449 as yet unmatched pairs. 50078 records in RAM.
INFO 2026-06-08 08:57:42 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:20:49s. Time for last 1,000,000: 1s. Last read position: chr16:21,479,542
INFO 2026-06-08 08:57:42 MarkDuplicates Tracking 439398 as yet unmatched pairs. 49023 records in RAM.
INFO 2026-06-08 08:57:44 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:20:51s. Time for last 1,000,000: 1s. Last read position: chr16:22,513,768
INFO 2026-06-08 08:57:44 MarkDuplicates Tracking 437779 as yet unmatched pairs. 47399 records in RAM.
INFO 2026-06-08 08:57:46 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:20:53s. Time for last 1,000,000: 1s. Last read position: chr16:24,806,279
INFO 2026-06-08 08:57:46 MarkDuplicates Tracking 436281 as yet unmatched pairs. 45900 records in RAM.
INFO 2026-06-08 08:57:47 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:20:54s. Time for last 1,000,000: 1s. Last read position: chr16:28,731,875
INFO 2026-06-08 08:57:47 MarkDuplicates Tracking 434085 as yet unmatched pairs. 43693 records in RAM.
INFO 2026-06-08 08:57:49 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:20:56s. Time for last 1,000,000: 1s. Last read position: chr16:29,455,844
INFO 2026-06-08 08:57:49 MarkDuplicates Tracking 432890 as yet unmatched pairs. 42492 records in RAM.
INFO 2026-06-08 08:57:50 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:20:57s. Time for last 1,000,000: 1s. Last read position: chr16:29,859,125
INFO 2026-06-08 08:57:50 MarkDuplicates Tracking 430931 as yet unmatched pairs. 40526 records in RAM.
INFO 2026-06-08 08:57:52 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:20:59s. Time for last 1,000,000: 1s. Last read position: chr16:30,121,954
INFO 2026-06-08 08:57:52 MarkDuplicates Tracking 428190 as yet unmatched pairs. 37772 records in RAM.
INFO 2026-06-08 08:57:53 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:21:00s. Time for last 1,000,000: 1s. Last read position: chr16:30,664,323
INFO 2026-06-08 08:57:53 MarkDuplicates Tracking 425931 as yet unmatched pairs. 35508 records in RAM.
INFO 2026-06-08 08:57:55 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:21:02s. Time for last 1,000,000: 1s. Last read position: chr16:31,180,152
INFO 2026-06-08 08:57:55 MarkDuplicates Tracking 423613 as yet unmatched pairs. 33185 records in RAM.
INFO 2026-06-08 08:57:56 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:21:04s. Time for last 1,000,000: 1s. Last read position: chr16:46,956,932
INFO 2026-06-08 08:57:56 MarkDuplicates Tracking 420908 as yet unmatched pairs. 30470 records in RAM.
INFO 2026-06-08 08:57:58 MarkDuplicates Read 482,000,000 records. Elapsed time: 00:21:05s. Time for last 1,000,000: 1s. Last read position: chr16:55,482,946
INFO 2026-06-08 08:57:58 MarkDuplicates Tracking 421014 as yet unmatched pairs. 30566 records in RAM.
INFO 2026-06-08 08:58:00 MarkDuplicates Read 483,000,000 records. Elapsed time: 00:21:07s. Time for last 1,000,000: 1s. Last read position: chr16:57,473,419
INFO 2026-06-08 08:58:00 MarkDuplicates Tracking 415834 as yet unmatched pairs. 25382 records in RAM.
INFO 2026-06-08 08:58:02 MarkDuplicates Read 484,000,000 records. Elapsed time: 00:21:09s. Time for last 1,000,000: 2s. Last read position: chr16:65,004,747
INFO 2026-06-08 08:58:02 MarkDuplicates Tracking 413254 as yet unmatched pairs. 22799 records in RAM.
INFO 2026-06-08 08:58:04 MarkDuplicates Read 485,000,000 records. Elapsed time: 00:21:11s. Time for last 1,000,000: 1s. Last read position: chr16:67,542,228
INFO 2026-06-08 08:58:04 MarkDuplicates Tracking 410401 as yet unmatched pairs. 19930 records in RAM.
INFO 2026-06-08 08:58:06 MarkDuplicates Read 486,000,000 records. Elapsed time: 00:21:13s. Time for last 1,000,000: 2s. Last read position: chr16:68,819,316
INFO 2026-06-08 08:58:06 MarkDuplicates Tracking 408311 as yet unmatched pairs. 17828 records in RAM.
INFO 2026-06-08 08:58:08 MarkDuplicates Read 487,000,000 records. Elapsed time: 00:21:15s. Time for last 1,000,000: 1s. Last read position: chr16:70,267,660
INFO 2026-06-08 08:58:08 MarkDuplicates Tracking 405122 as yet unmatched pairs. 14632 records in RAM.
INFO 2026-06-08 08:58:09 MarkDuplicates Read 488,000,000 records. Elapsed time: 00:21:16s. Time for last 1,000,000: 1s. Last read position: chr16:74,301,558
INFO 2026-06-08 08:58:09 MarkDuplicates Tracking 402848 as yet unmatched pairs. 12353 records in RAM.
INFO 2026-06-08 08:58:11 MarkDuplicates Read 489,000,000 records. Elapsed time: 00:21:18s. Time for last 1,000,000: 1s. Last read position: chr16:81,705,552
INFO 2026-06-08 08:58:11 MarkDuplicates Tracking 400096 as yet unmatched pairs. 9588 records in RAM.
INFO 2026-06-08 08:58:13 MarkDuplicates Read 490,000,000 records. Elapsed time: 00:21:20s. Time for last 1,000,000: 1s. Last read position: chr16:87,412,678
INFO 2026-06-08 08:58:13 MarkDuplicates Tracking 397286 as yet unmatched pairs. 6773 records in RAM.
INFO 2026-06-08 08:58:14 MarkDuplicates Read 491,000,000 records. Elapsed time: 00:21:21s. Time for last 1,000,000: 1s. Last read position: chr16:88,734,425
INFO 2026-06-08 08:58:14 MarkDuplicates Tracking 394668 as yet unmatched pairs. 4143 records in RAM.
INFO 2026-06-08 08:58:16 MarkDuplicates Read 492,000,000 records. Elapsed time: 00:21:23s. Time for last 1,000,000: 1s. Last read position: chr16:89,860,777
INFO 2026-06-08 08:58:16 MarkDuplicates Tracking 391414 as yet unmatched pairs. 880 records in RAM.
INFO 2026-06-08 08:58:19 MarkDuplicates Read 493,000,000 records. Elapsed time: 00:21:26s. Time for last 1,000,000: 2s. Last read position: chr17:1,470,638
INFO 2026-06-08 08:58:19 MarkDuplicates Tracking 388943 as yet unmatched pairs. 120799 records in RAM.
INFO 2026-06-08 08:58:20 MarkDuplicates Read 494,000,000 records. Elapsed time: 00:21:27s. Time for last 1,000,000: 1s. Last read position: chr17:2,698,386
INFO 2026-06-08 08:58:20 MarkDuplicates Tracking 386165 as yet unmatched pairs. 118019 records in RAM.
INFO 2026-06-08 08:58:22 MarkDuplicates Read 495,000,000 records. Elapsed time: 00:21:29s. Time for last 1,000,000: 1s. Last read position: chr17:4,946,809
INFO 2026-06-08 08:58:22 MarkDuplicates Tracking 384463 as yet unmatched pairs. 116315 records in RAM.
INFO 2026-06-08 08:58:24 MarkDuplicates Read 496,000,000 records. Elapsed time: 00:21:31s. Time for last 1,000,000: 1s. Last read position: chr17:7,285,824
INFO 2026-06-08 08:58:24 MarkDuplicates Tracking 380679 as yet unmatched pairs. 112523 records in RAM.
INFO 2026-06-08 08:58:25 MarkDuplicates Read 497,000,000 records. Elapsed time: 00:21:32s. Time for last 1,000,000: 1s. Last read position: chr17:7,579,987
INFO 2026-06-08 08:58:25 MarkDuplicates Tracking 379303 as yet unmatched pairs. 111142 records in RAM.
INFO 2026-06-08 08:58:28 MarkDuplicates Read 498,000,000 records. Elapsed time: 00:21:36s. Time for last 1,000,000: 3s. Last read position: chr17:10,503,042
INFO 2026-06-08 08:58:28 MarkDuplicates Tracking 376013 as yet unmatched pairs. 107845 records in RAM.
INFO 2026-06-08 08:58:30 MarkDuplicates Read 499,000,000 records. Elapsed time: 00:21:37s. Time for last 1,000,000: 1s. Last read position: chr17:16,382,390
INFO 2026-06-08 08:58:30 MarkDuplicates Tracking 373850 as yet unmatched pairs. 105676 records in RAM.
INFO 2026-06-08 08:58:32 MarkDuplicates Read 500,000,000 records. Elapsed time: 00:21:39s. Time for last 1,000,000: 1s. Last read position: chr17:19,003,835
INFO 2026-06-08 08:58:32 MarkDuplicates Tracking 370905 as yet unmatched pairs. 102728 records in RAM.
INFO 2026-06-08 08:58:34 MarkDuplicates Read 501,000,000 records. Elapsed time: 00:21:41s. Time for last 1,000,000: 1s. Last read position: chr17:28,714,648
INFO 2026-06-08 08:58:34 MarkDuplicates Tracking 368735 as yet unmatched pairs. 100546 records in RAM.
INFO 2026-06-08 08:58:36 MarkDuplicates Read 502,000,000 records. Elapsed time: 00:21:43s. Time for last 1,000,000: 1s. Last read position: chr17:31,358,519
INFO 2026-06-08 08:58:36 MarkDuplicates Tracking 366257 as yet unmatched pairs. 98063 records in RAM.
INFO 2026-06-08 08:58:38 MarkDuplicates Read 503,000,000 records. Elapsed time: 00:21:45s. Time for last 1,000,000: 1s. Last read position: chr17:36,211,152
INFO 2026-06-08 08:58:38 MarkDuplicates Tracking 363683 as yet unmatched pairs. 95485 records in RAM.
INFO 2026-06-08 08:58:39 MarkDuplicates Read 504,000,000 records. Elapsed time: 00:21:46s. Time for last 1,000,000: 1s. Last read position: chr17:38,870,151
INFO 2026-06-08 08:58:39 MarkDuplicates Tracking 361903 as yet unmatched pairs. 93693 records in RAM.
INFO 2026-06-08 08:58:41 MarkDuplicates Read 505,000,000 records. Elapsed time: 00:21:48s. Time for last 1,000,000: 1s. Last read position: chr17:39,723,953
INFO 2026-06-08 08:58:41 MarkDuplicates Tracking 359105 as yet unmatched pairs. 90894 records in RAM.
INFO 2026-06-08 09:00:46 MarkDuplicates Read 506,000,000 records. Elapsed time: 00:23:53s. Time for last 1,000,000: 125s. Last read position: chr17:40,630,738
INFO 2026-06-08 09:00:46 MarkDuplicates Tracking 355890 as yet unmatched pairs. 87668 records in RAM.
INFO 2026-06-08 09:00:48 MarkDuplicates Read 507,000,000 records. Elapsed time: 00:23:55s. Time for last 1,000,000: 2s. Last read position: chr17:42,212,116
INFO 2026-06-08 09:00:48 MarkDuplicates Tracking 353243 as yet unmatched pairs. 85019 records in RAM.
INFO 2026-06-08 09:00:50 MarkDuplicates Read 508,000,000 records. Elapsed time: 00:23:57s. Time for last 1,000,000: 1s. Last read position: chr17:43,180,794
INFO 2026-06-08 09:00:50 MarkDuplicates Tracking 350568 as yet unmatched pairs. 82342 records in RAM.
INFO 2026-06-08 09:00:52 MarkDuplicates Read 509,000,000 records. Elapsed time: 00:23:59s. Time for last 1,000,000: 1s. Last read position: chr17:45,113,465
INFO 2026-06-08 09:00:52 MarkDuplicates Tracking 347895 as yet unmatched pairs. 79665 records in RAM.
INFO 2026-06-08 09:00:53 MarkDuplicates Read 510,000,000 records. Elapsed time: 00:24:01s. Time for last 1,000,000: 1s. Last read position: chr17:47,916,504
INFO 2026-06-08 09:00:53 MarkDuplicates Tracking 345313 as yet unmatched pairs. 77077 records in RAM.
INFO 2026-06-08 09:00:55 MarkDuplicates Read 511,000,000 records. Elapsed time: 00:24:02s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,453
INFO 2026-06-08 09:00:55 MarkDuplicates Tracking 349632 as yet unmatched pairs. 81382 records in RAM.
INFO 2026-06-08 09:00:57 MarkDuplicates Read 512,000,000 records. Elapsed time: 00:24:04s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,397
INFO 2026-06-08 09:00:57 MarkDuplicates Tracking 350610 as yet unmatched pairs. 82357 records in RAM.
INFO 2026-06-08 09:00:58 MarkDuplicates Read 513,000,000 records. Elapsed time: 00:24:06s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,014
INFO 2026-06-08 09:00:58 MarkDuplicates Tracking 378974 as yet unmatched pairs. 110719 records in RAM.
INFO 2026-06-08 09:01:01 MarkDuplicates Read 514,000,000 records. Elapsed time: 00:24:08s. Time for last 1,000,000: 2s. Last read position: chr17:50,187,927
INFO 2026-06-08 09:01:01 MarkDuplicates Tracking 355876 as yet unmatched pairs. 87616 records in RAM.
INFO 2026-06-08 09:01:03 MarkDuplicates Read 515,000,000 records. Elapsed time: 00:24:10s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,576
INFO 2026-06-08 09:01:03 MarkDuplicates Tracking 370543 as yet unmatched pairs. 102282 records in RAM.
INFO 2026-06-08 09:01:05 MarkDuplicates Read 516,000,000 records. Elapsed time: 00:24:12s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,218
INFO 2026-06-08 09:01:05 MarkDuplicates Tracking 351730 as yet unmatched pairs. 83468 records in RAM.
INFO 2026-06-08 09:01:07 MarkDuplicates Read 517,000,000 records. Elapsed time: 00:24:15s. Time for last 1,000,000: 2s. Last read position: chr17:50,189,518
INFO 2026-06-08 09:01:07 MarkDuplicates Tracking 378452 as yet unmatched pairs. 110179 records in RAM.
INFO 2026-06-08 09:01:09 MarkDuplicates Read 518,000,000 records. Elapsed time: 00:24:16s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,064
INFO 2026-06-08 09:01:09 MarkDuplicates Tracking 372921 as yet unmatched pairs. 104639 records in RAM.
INFO 2026-06-08 09:01:11 MarkDuplicates Read 519,000,000 records. Elapsed time: 00:24:18s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,414
INFO 2026-06-08 09:01:11 MarkDuplicates Tracking 345508 as yet unmatched pairs. 77219 records in RAM.
INFO 2026-06-08 09:01:13 MarkDuplicates Read 520,000,000 records. Elapsed time: 00:24:20s. Time for last 1,000,000: 2s. Last read position: chr17:50,192,676
INFO 2026-06-08 09:01:13 MarkDuplicates Tracking 357019 as yet unmatched pairs. 88727 records in RAM.
INFO 2026-06-08 09:01:15 MarkDuplicates Read 521,000,000 records. Elapsed time: 00:24:22s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,014
INFO 2026-06-08 09:01:15 MarkDuplicates Tracking 352776 as yet unmatched pairs. 84484 records in RAM.
INFO 2026-06-08 09:01:16 MarkDuplicates Read 522,000,000 records. Elapsed time: 00:24:23s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,576
INFO 2026-06-08 09:01:16 MarkDuplicates Tracking 341032 as yet unmatched pairs. 72735 records in RAM.
INFO 2026-06-08 09:01:18 MarkDuplicates Read 523,000,000 records. Elapsed time: 00:24:25s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,267
INFO 2026-06-08 09:01:18 MarkDuplicates Tracking 337081 as yet unmatched pairs. 68781 records in RAM.
INFO 2026-06-08 09:01:20 MarkDuplicates Read 524,000,000 records. Elapsed time: 00:24:27s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,969
INFO 2026-06-08 09:01:20 MarkDuplicates Tracking 328327 as yet unmatched pairs. 60016 records in RAM.
INFO 2026-06-08 09:01:22 MarkDuplicates Read 525,000,000 records. Elapsed time: 00:24:29s. Time for last 1,000,000: 1s. Last read position: chr17:50,196,494
INFO 2026-06-08 09:01:22 MarkDuplicates Tracking 347045 as yet unmatched pairs. 78731 records in RAM.
INFO 2026-06-08 09:01:24 MarkDuplicates Read 526,000,000 records. Elapsed time: 00:24:31s. Time for last 1,000,000: 2s. Last read position: chr17:50,197,737
INFO 2026-06-08 09:01:24 MarkDuplicates Tracking 343881 as yet unmatched pairs. 75567 records in RAM.
INFO 2026-06-08 09:01:25 MarkDuplicates Read 527,000,000 records. Elapsed time: 00:24:32s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,260
INFO 2026-06-08 09:01:25 MarkDuplicates Tracking 316154 as yet unmatched pairs. 47840 records in RAM.
INFO 2026-06-08 09:01:27 MarkDuplicates Read 528,000,000 records. Elapsed time: 00:24:35s. Time for last 1,000,000: 2s. Last read position: chr17:50,199,820
INFO 2026-06-08 09:01:27 MarkDuplicates Tracking 309374 as yet unmatched pairs. 41059 records in RAM.
INFO 2026-06-08 09:01:30 MarkDuplicates Read 529,000,000 records. Elapsed time: 00:24:37s. Time for last 1,000,000: 2s. Last read position: chr17:51,168,279
INFO 2026-06-08 09:01:30 MarkDuplicates Tracking 294462 as yet unmatched pairs. 26144 records in RAM.
INFO 2026-06-08 09:01:32 MarkDuplicates Read 530,000,000 records. Elapsed time: 00:24:39s. Time for last 1,000,000: 1s. Last read position: chr17:59,664,798
INFO 2026-06-08 09:01:32 MarkDuplicates Tracking 292969 as yet unmatched pairs. 24641 records in RAM.
INFO 2026-06-08 09:01:33 MarkDuplicates Read 531,000,000 records. Elapsed time: 00:24:41s. Time for last 1,000,000: 1s. Last read position: chr17:62,688,891
INFO 2026-06-08 09:01:33 MarkDuplicates Tracking 288361 as yet unmatched pairs. 20024 records in RAM.
INFO 2026-06-08 09:01:35 MarkDuplicates Read 532,000,000 records. Elapsed time: 00:24:42s. Time for last 1,000,000: 1s. Last read position: chr17:67,190,290
INFO 2026-06-08 09:01:35 MarkDuplicates Tracking 286022 as yet unmatched pairs. 17680 records in RAM.
INFO 2026-06-08 09:01:37 MarkDuplicates Read 533,000,000 records. Elapsed time: 00:24:44s. Time for last 1,000,000: 1s. Last read position: chr17:74,209,217
INFO 2026-06-08 09:01:37 MarkDuplicates Tracking 283455 as yet unmatched pairs. 15106 records in RAM.
INFO 2026-06-08 09:01:38 MarkDuplicates Read 534,000,000 records. Elapsed time: 00:24:46s. Time for last 1,000,000: 1s. Last read position: chr17:75,778,575
INFO 2026-06-08 09:01:38 MarkDuplicates Tracking 281001 as yet unmatched pairs. 12650 records in RAM.
INFO 2026-06-08 09:01:40 MarkDuplicates Read 535,000,000 records. Elapsed time: 00:24:47s. Time for last 1,000,000: 1s. Last read position: chr17:77,482,171
INFO 2026-06-08 09:01:40 MarkDuplicates Tracking 278578 as yet unmatched pairs. 10219 records in RAM.
INFO 2026-06-08 09:01:41 MarkDuplicates Read 536,000,000 records. Elapsed time: 00:24:49s. Time for last 1,000,000: 1s. Last read position: chr17:80,135,372
INFO 2026-06-08 09:01:41 MarkDuplicates Tracking 275351 as yet unmatched pairs. 6989 records in RAM.
INFO 2026-06-08 09:01:43 MarkDuplicates Read 537,000,000 records. Elapsed time: 00:24:50s. Time for last 1,000,000: 1s. Last read position: chr17:81,686,361
INFO 2026-06-08 09:01:43 MarkDuplicates Tracking 272558 as yet unmatched pairs. 4192 records in RAM.
INFO 2026-06-08 09:01:45 MarkDuplicates Read 538,000,000 records. Elapsed time: 00:24:52s. Time for last 1,000,000: 1s. Last read position: chr17:82,236,183
INFO 2026-06-08 09:01:45 MarkDuplicates Tracking 270254 as yet unmatched pairs. 1883 records in RAM.
INFO 2026-06-08 09:01:46 MarkDuplicates Read 539,000,000 records. Elapsed time: 00:24:53s. Time for last 1,000,000: 1s. Last read position: chr18:8,609,837
INFO 2026-06-08 09:01:46 MarkDuplicates Tracking 267279 as yet unmatched pairs. 10801 records in RAM.
INFO 2026-06-08 09:01:48 MarkDuplicates Read 540,000,000 records. Elapsed time: 00:24:55s. Time for last 1,000,000: 2s. Last read position: chr18:23,554,793
INFO 2026-06-08 09:01:48 MarkDuplicates Tracking 264735 as yet unmatched pairs. 8250 records in RAM.
INFO 2026-06-08 09:01:50 MarkDuplicates Read 541,000,000 records. Elapsed time: 00:24:57s. Time for last 1,000,000: 1s. Last read position: chr18:36,145,007
INFO 2026-06-08 09:01:50 MarkDuplicates Tracking 262521 as yet unmatched pairs. 6031 records in RAM.
INFO 2026-06-08 09:01:52 MarkDuplicates Read 542,000,000 records. Elapsed time: 00:24:59s. Time for last 1,000,000: 2s. Last read position: chr18:55,269,939
INFO 2026-06-08 09:01:52 MarkDuplicates Tracking 260036 as yet unmatched pairs. 3536 records in RAM.
INFO 2026-06-08 09:01:55 MarkDuplicates Read 543,000,000 records. Elapsed time: 00:25:02s. Time for last 1,000,000: 2s. Last read position: chr18:74,635,495
INFO 2026-06-08 09:01:55 MarkDuplicates Tracking 257418 as yet unmatched pairs. 908 records in RAM.
INFO 2026-06-08 09:01:57 MarkDuplicates Read 544,000,000 records. Elapsed time: 00:25:05s. Time for last 1,000,000: 2s. Last read position: chr19:804,638
INFO 2026-06-08 09:01:57 MarkDuplicates Tracking 254954 as yet unmatched pairs. 111128 records in RAM.
INFO 2026-06-08 09:01:59 MarkDuplicates Read 545,000,000 records. Elapsed time: 00:25:06s. Time for last 1,000,000: 1s. Last read position: chr19:1,255,524
INFO 2026-06-08 09:01:59 MarkDuplicates Tracking 252226 as yet unmatched pairs. 108397 records in RAM.
INFO 2026-06-08 09:02:01 MarkDuplicates Read 546,000,000 records. Elapsed time: 00:25:08s. Time for last 1,000,000: 1s. Last read position: chr19:2,116,215
INFO 2026-06-08 09:02:01 MarkDuplicates Tracking 248688 as yet unmatched pairs. 104856 records in RAM.
INFO 2026-06-08 09:02:02 MarkDuplicates Read 547,000,000 records. Elapsed time: 00:25:09s. Time for last 1,000,000: 1s. Last read position: chr19:3,959,230
INFO 2026-06-08 09:02:02 MarkDuplicates Tracking 245517 as yet unmatched pairs. 101684 records in RAM.
INFO 2026-06-08 09:02:04 MarkDuplicates Read 548,000,000 records. Elapsed time: 00:25:11s. Time for last 1,000,000: 1s. Last read position: chr19:5,611,390
INFO 2026-06-08 09:02:04 MarkDuplicates Tracking 242627 as yet unmatched pairs. 98792 records in RAM.
INFO 2026-06-08 09:02:06 MarkDuplicates Read 549,000,000 records. Elapsed time: 00:25:13s. Time for last 1,000,000: 1s. Last read position: chr19:6,694,567
INFO 2026-06-08 09:02:06 MarkDuplicates Tracking 241088 as yet unmatched pairs. 97253 records in RAM.
INFO 2026-06-08 09:02:07 MarkDuplicates Read 550,000,000 records. Elapsed time: 00:25:14s. Time for last 1,000,000: 1s. Last read position: chr19:8,305,093
INFO 2026-06-08 09:02:07 MarkDuplicates Tracking 237873 as yet unmatched pairs. 94027 records in RAM.
INFO 2026-06-08 09:02:09 MarkDuplicates Read 551,000,000 records. Elapsed time: 00:25:16s. Time for last 1,000,000: 1s. Last read position: chr19:10,354,196
INFO 2026-06-08 09:02:09 MarkDuplicates Tracking 234811 as yet unmatched pairs. 90965 records in RAM.
INFO 2026-06-08 09:02:11 MarkDuplicates Read 552,000,000 records. Elapsed time: 00:25:18s. Time for last 1,000,000: 1s. Last read position: chr19:11,194,002
INFO 2026-06-08 09:02:11 MarkDuplicates Tracking 233044 as yet unmatched pairs. 89189 records in RAM.
INFO 2026-06-08 09:02:12 MarkDuplicates Read 553,000,000 records. Elapsed time: 00:25:19s. Time for last 1,000,000: 1s. Last read position: chr19:12,792,325
INFO 2026-06-08 09:02:12 MarkDuplicates Tracking 229412 as yet unmatched pairs. 85556 records in RAM.
INFO 2026-06-08 09:02:14 MarkDuplicates Read 554,000,000 records. Elapsed time: 00:25:21s. Time for last 1,000,000: 1s. Last read position: chr19:14,100,826
INFO 2026-06-08 09:02:14 MarkDuplicates Tracking 227113 as yet unmatched pairs. 83251 records in RAM.
INFO 2026-06-08 09:02:15 MarkDuplicates Read 555,000,000 records. Elapsed time: 00:25:22s. Time for last 1,000,000: 1s. Last read position: chr19:15,161,702
INFO 2026-06-08 09:02:15 MarkDuplicates Tracking 223868 as yet unmatched pairs. 80003 records in RAM.
INFO 2026-06-08 09:02:17 MarkDuplicates Read 556,000,000 records. Elapsed time: 00:25:24s. Time for last 1,000,000: 1s. Last read position: chr19:16,076,111
INFO 2026-06-08 09:02:17 MarkDuplicates Tracking 221061 as yet unmatched pairs. 77193 records in RAM.
INFO 2026-06-08 09:02:19 MarkDuplicates Read 557,000,000 records. Elapsed time: 00:25:26s. Time for last 1,000,000: 1s. Last read position: chr19:17,784,217
INFO 2026-06-08 09:02:19 MarkDuplicates Tracking 217786 as yet unmatched pairs. 73911 records in RAM.
INFO 2026-06-08 09:02:21 MarkDuplicates Read 558,000,000 records. Elapsed time: 00:25:28s. Time for last 1,000,000: 2s. Last read position: chr19:18,782,858
INFO 2026-06-08 09:02:21 MarkDuplicates Tracking 215270 as yet unmatched pairs. 71394 records in RAM.
INFO 2026-06-08 09:02:23 MarkDuplicates Read 559,000,000 records. Elapsed time: 00:25:30s. Time for last 1,000,000: 1s. Last read position: chr19:29,207,830
INFO 2026-06-08 09:02:23 MarkDuplicates Tracking 212647 as yet unmatched pairs. 68764 records in RAM.
INFO 2026-06-08 09:02:25 MarkDuplicates Read 560,000,000 records. Elapsed time: 00:25:32s. Time for last 1,000,000: 1s. Last read position: chr19:34,959,189
INFO 2026-06-08 09:02:25 MarkDuplicates Tracking 209420 as yet unmatched pairs. 65532 records in RAM.
INFO 2026-06-08 09:02:27 MarkDuplicates Read 561,000,000 records. Elapsed time: 00:25:34s. Time for last 1,000,000: 1s. Last read position: chr19:35,618,398
INFO 2026-06-08 09:02:27 MarkDuplicates Tracking 206191 as yet unmatched pairs. 62301 records in RAM.
INFO 2026-06-08 09:02:28 MarkDuplicates Read 562,000,000 records. Elapsed time: 00:25:35s. Time for last 1,000,000: 1s. Last read position: chr19:38,164,525
INFO 2026-06-08 09:02:28 MarkDuplicates Tracking 203645 as yet unmatched pairs. 59753 records in RAM.
INFO 2026-06-08 09:02:30 MarkDuplicates Read 563,000,000 records. Elapsed time: 00:25:37s. Time for last 1,000,000: 1s. Last read position: chr19:38,718,033
INFO 2026-06-08 09:02:30 MarkDuplicates Tracking 202219 as yet unmatched pairs. 58320 records in RAM.
INFO 2026-06-08 09:02:32 MarkDuplicates Read 564,000,000 records. Elapsed time: 00:25:39s. Time for last 1,000,000: 1s. Last read position: chr19:39,375,810
INFO 2026-06-08 09:02:32 MarkDuplicates Tracking 198534 as yet unmatched pairs. 54630 records in RAM.
INFO 2026-06-08 09:02:33 MarkDuplicates Read 565,000,000 records. Elapsed time: 00:25:40s. Time for last 1,000,000: 1s. Last read position: chr19:39,875,575
INFO 2026-06-08 09:02:33 MarkDuplicates Tracking 195534 as yet unmatched pairs. 51625 records in RAM.
INFO 2026-06-08 09:02:35 MarkDuplicates Read 566,000,000 records. Elapsed time: 00:25:42s. Time for last 1,000,000: 1s. Last read position: chr19:40,626,972
INFO 2026-06-08 09:02:35 MarkDuplicates Tracking 193062 as yet unmatched pairs. 49151 records in RAM.
INFO 2026-06-08 09:02:36 MarkDuplicates Read 567,000,000 records. Elapsed time: 00:25:43s. Time for last 1,000,000: 1s. Last read position: chr19:41,708,660
INFO 2026-06-08 09:02:36 MarkDuplicates Tracking 216600 as yet unmatched pairs. 72683 records in RAM.
INFO 2026-06-08 09:02:38 MarkDuplicates Read 568,000,000 records. Elapsed time: 00:25:45s. Time for last 1,000,000: 1s. Last read position: chr19:41,715,026
INFO 2026-06-08 09:02:38 MarkDuplicates Tracking 208622 as yet unmatched pairs. 64705 records in RAM.
INFO 2026-06-08 09:02:39 MarkDuplicates Read 569,000,000 records. Elapsed time: 00:25:47s. Time for last 1,000,000: 1s. Last read position: chr19:41,717,540
INFO 2026-06-08 09:02:39 MarkDuplicates Tracking 220443 as yet unmatched pairs. 76524 records in RAM.
INFO 2026-06-08 09:02:41 MarkDuplicates Read 570,000,000 records. Elapsed time: 00:25:48s. Time for last 1,000,000: 1s. Last read position: chr19:41,719,998
INFO 2026-06-08 09:02:41 MarkDuplicates Tracking 199591 as yet unmatched pairs. 55672 records in RAM.
INFO 2026-06-08 09:02:42 MarkDuplicates Read 571,000,000 records. Elapsed time: 00:25:50s. Time for last 1,000,000: 1s. Last read position: chr19:41,756,824
INFO 2026-06-08 09:02:42 MarkDuplicates Tracking 185520 as yet unmatched pairs. 41599 records in RAM.
INFO 2026-06-08 09:02:44 MarkDuplicates Read 572,000,000 records. Elapsed time: 00:25:51s. Time for last 1,000,000: 1s. Last read position: chr19:42,249,620
INFO 2026-06-08 09:02:44 MarkDuplicates Tracking 179347 as yet unmatched pairs. 35426 records in RAM.
INFO 2026-06-08 09:02:46 MarkDuplicates Read 573,000,000 records. Elapsed time: 00:25:53s. Time for last 1,000,000: 2s. Last read position: chr19:42,521,200
INFO 2026-06-08 09:02:46 MarkDuplicates Tracking 176651 as yet unmatched pairs. 32726 records in RAM.
INFO 2026-06-08 09:02:48 MarkDuplicates Read 574,000,000 records. Elapsed time: 00:25:55s. Time for last 1,000,000: 2s. Last read position: chr19:44,893,855
INFO 2026-06-08 09:02:48 MarkDuplicates Tracking 173809 as yet unmatched pairs. 29881 records in RAM.
INFO 2026-06-08 09:02:50 MarkDuplicates Read 575,000,000 records. Elapsed time: 00:25:57s. Time for last 1,000,000: 1s. Last read position: chr19:45,688,428
INFO 2026-06-08 09:02:50 MarkDuplicates Tracking 171191 as yet unmatched pairs. 27259 records in RAM.
INFO 2026-06-08 09:02:52 MarkDuplicates Read 576,000,000 records. Elapsed time: 00:25:59s. Time for last 1,000,000: 1s. Last read position: chr19:47,090,140
INFO 2026-06-08 09:02:52 MarkDuplicates Tracking 167756 as yet unmatched pairs. 23821 records in RAM.
INFO 2026-06-08 09:02:53 MarkDuplicates Read 577,000,000 records. Elapsed time: 00:26:00s. Time for last 1,000,000: 1s. Last read position: chr19:48,615,366
INFO 2026-06-08 09:02:53 MarkDuplicates Tracking 166158 as yet unmatched pairs. 22219 records in RAM.
INFO 2026-06-08 09:02:55 MarkDuplicates Read 578,000,000 records. Elapsed time: 00:26:02s. Time for last 1,000,000: 1s. Last read position: chr19:49,145,943
INFO 2026-06-08 09:02:55 MarkDuplicates Tracking 162075 as yet unmatched pairs. 18133 records in RAM.
INFO 2026-06-08 09:02:56 MarkDuplicates Read 579,000,000 records. Elapsed time: 00:26:03s. Time for last 1,000,000: 1s. Last read position: chr19:49,635,571
INFO 2026-06-08 09:02:56 MarkDuplicates Tracking 160306 as yet unmatched pairs. 16361 records in RAM.
INFO 2026-06-08 09:02:58 MarkDuplicates Read 580,000,000 records. Elapsed time: 00:26:05s. Time for last 1,000,000: 1s. Last read position: chr19:50,259,198
INFO 2026-06-08 09:02:58 MarkDuplicates Tracking 157045 as yet unmatched pairs. 13099 records in RAM.
INFO 2026-06-08 09:02:59 MarkDuplicates Read 581,000,000 records. Elapsed time: 00:26:07s. Time for last 1,000,000: 1s. Last read position: chr19:52,290,763
INFO 2026-06-08 09:02:59 MarkDuplicates Tracking 153580 as yet unmatched pairs. 9634 records in RAM.
INFO 2026-06-08 09:03:01 MarkDuplicates Read 582,000,000 records. Elapsed time: 00:26:08s. Time for last 1,000,000: 1s. Last read position: chr19:54,356,398
INFO 2026-06-08 09:03:01 MarkDuplicates Tracking 150938 as yet unmatched pairs. 6989 records in RAM.
INFO 2026-06-08 09:03:03 MarkDuplicates Read 583,000,000 records. Elapsed time: 00:26:10s. Time for last 1,000,000: 1s. Last read position: chr19:55,517,858
INFO 2026-06-08 09:03:03 MarkDuplicates Tracking 148697 as yet unmatched pairs. 4748 records in RAM.
INFO 2026-06-08 09:03:04 MarkDuplicates Read 584,000,000 records. Elapsed time: 00:26:11s. Time for last 1,000,000: 1s. Last read position: chr19:58,230,449
INFO 2026-06-08 09:03:04 MarkDuplicates Tracking 145525 as yet unmatched pairs. 1572 records in RAM.
INFO 2026-06-08 09:03:06 MarkDuplicates Read 585,000,000 records. Elapsed time: 00:26:13s. Time for last 1,000,000: 1s. Last read position: chr20:2,751,767
INFO 2026-06-08 09:03:06 MarkDuplicates Tracking 142680 as yet unmatched pairs. 42489 records in RAM.
INFO 2026-06-08 09:03:08 MarkDuplicates Read 586,000,000 records. Elapsed time: 00:26:15s. Time for last 1,000,000: 1s. Last read position: chr20:10,651,691
INFO 2026-06-08 09:03:08 MarkDuplicates Tracking 140140 as yet unmatched pairs. 39948 records in RAM.
INFO 2026-06-08 09:03:10 MarkDuplicates Read 587,000,000 records. Elapsed time: 00:26:17s. Time for last 1,000,000: 1s. Last read position: chr20:21,303,355
INFO 2026-06-08 09:03:10 MarkDuplicates Tracking 137643 as yet unmatched pairs. 37447 records in RAM.
INFO 2026-06-08 09:03:12 MarkDuplicates Read 588,000,000 records. Elapsed time: 00:26:19s. Time for last 1,000,000: 2s. Last read position: chr20:31,665,931
INFO 2026-06-08 09:03:12 MarkDuplicates Tracking 135935 as yet unmatched pairs. 35734 records in RAM.
INFO 2026-06-08 09:03:14 MarkDuplicates Read 589,000,000 records. Elapsed time: 00:26:21s. Time for last 1,000,000: 1s. Last read position: chr20:34,294,121
INFO 2026-06-08 09:03:14 MarkDuplicates Tracking 132512 as yet unmatched pairs. 32307 records in RAM.
INFO 2026-06-08 09:03:16 MarkDuplicates Read 590,000,000 records. Elapsed time: 00:26:23s. Time for last 1,000,000: 2s. Last read position: chr20:35,627,339
INFO 2026-06-08 09:03:16 MarkDuplicates Tracking 129828 as yet unmatched pairs. 29621 records in RAM.
INFO 2026-06-08 09:03:18 MarkDuplicates Read 591,000,000 records. Elapsed time: 00:26:25s. Time for last 1,000,000: 1s. Last read position: chr20:36,793,863
INFO 2026-06-08 09:03:18 MarkDuplicates Tracking 127122 as yet unmatched pairs. 26913 records in RAM.
INFO 2026-06-08 09:03:19 MarkDuplicates Read 592,000,000 records. Elapsed time: 00:26:26s. Time for last 1,000,000: 1s. Last read position: chr20:41,174,264
INFO 2026-06-08 09:03:19 MarkDuplicates Tracking 124464 as yet unmatched pairs. 24250 records in RAM.
INFO 2026-06-08 09:03:21 MarkDuplicates Read 593,000,000 records. Elapsed time: 00:26:28s. Time for last 1,000,000: 1s. Last read position: chr20:45,327,285
INFO 2026-06-08 09:03:21 MarkDuplicates Tracking 124440 as yet unmatched pairs. 24225 records in RAM.
INFO 2026-06-08 09:03:22 MarkDuplicates Read 594,000,000 records. Elapsed time: 00:26:30s. Time for last 1,000,000: 1s. Last read position: chr20:45,897,753
INFO 2026-06-08 09:03:22 MarkDuplicates Tracking 120678 as yet unmatched pairs. 20459 records in RAM.
INFO 2026-06-08 09:03:24 MarkDuplicates Read 595,000,000 records. Elapsed time: 00:26:31s. Time for last 1,000,000: 1s. Last read position: chr20:49,088,036
INFO 2026-06-08 09:03:24 MarkDuplicates Tracking 116629 as yet unmatched pairs. 16409 records in RAM.
INFO 2026-06-08 09:03:26 MarkDuplicates Read 596,000,000 records. Elapsed time: 00:26:33s. Time for last 1,000,000: 1s. Last read position: chr20:51,601,237
INFO 2026-06-08 09:03:26 MarkDuplicates Tracking 114762 as yet unmatched pairs. 14538 records in RAM.
INFO 2026-06-08 09:03:27 MarkDuplicates Read 597,000,000 records. Elapsed time: 00:26:35s. Time for last 1,000,000: 1s. Last read position: chr20:58,359,690
INFO 2026-06-08 09:03:27 MarkDuplicates Tracking 111249 as yet unmatched pairs. 11021 records in RAM.
INFO 2026-06-08 09:03:29 MarkDuplicates Read 598,000,000 records. Elapsed time: 00:26:37s. Time for last 1,000,000: 2s. Last read position: chr20:62,139,135
INFO 2026-06-08 09:03:29 MarkDuplicates Tracking 108547 as yet unmatched pairs. 8316 records in RAM.
INFO 2026-06-08 09:03:32 MarkDuplicates Read 599,000,000 records. Elapsed time: 00:26:39s. Time for last 1,000,000: 2s. Last read position: chr20:62,812,611
INFO 2026-06-08 09:03:32 MarkDuplicates Tracking 105159 as yet unmatched pairs. 4922 records in RAM.
INFO 2026-06-08 09:03:33 MarkDuplicates Read 600,000,000 records. Elapsed time: 00:26:41s. Time for last 1,000,000: 1s. Last read position: chr20:63,565,654
INFO 2026-06-08 09:03:33 MarkDuplicates Tracking 102443 as yet unmatched pairs. 2205 records in RAM.
INFO 2026-06-08 09:03:35 MarkDuplicates Read 601,000,000 records. Elapsed time: 00:26:42s. Time for last 1,000,000: 1s. Last read position: chr21:8,214,675
INFO 2026-06-08 09:03:35 MarkDuplicates Tracking 99944 as yet unmatched pairs. 17896 records in RAM.
INFO 2026-06-08 09:03:36 MarkDuplicates Read 602,000,000 records. Elapsed time: 00:26:43s. Time for last 1,000,000: 1s. Last read position: chr21:8,397,780
INFO 2026-06-08 09:03:36 MarkDuplicates Tracking 98922 as yet unmatched pairs. 16870 records in RAM.
INFO 2026-06-08 09:03:37 MarkDuplicates Read 603,000,000 records. Elapsed time: 00:26:45s. Time for last 1,000,000: 1s. Last read position: chr21:8,444,117
INFO 2026-06-08 09:03:37 MarkDuplicates Tracking 97975 as yet unmatched pairs. 15920 records in RAM.
INFO 2026-06-08 09:03:39 MarkDuplicates Read 604,000,000 records. Elapsed time: 00:26:47s. Time for last 1,000,000: 1s. Last read position: chr21:29,326,314
INFO 2026-06-08 09:03:39 MarkDuplicates Tracking 96249 as yet unmatched pairs. 14193 records in RAM.
INFO 2026-06-08 09:03:41 MarkDuplicates Read 605,000,000 records. Elapsed time: 00:26:48s. Time for last 1,000,000: 1s. Last read position: chr21:36,072,740
INFO 2026-06-08 09:03:41 MarkDuplicates Tracking 93495 as yet unmatched pairs. 11437 records in RAM.
INFO 2026-06-08 09:03:43 MarkDuplicates Read 606,000,000 records. Elapsed time: 00:26:50s. Time for last 1,000,000: 2s. Last read position: chr21:39,392,998
INFO 2026-06-08 09:03:43 MarkDuplicates Tracking 90956 as yet unmatched pairs. 8896 records in RAM.
INFO 2026-06-08 09:03:45 MarkDuplicates Read 607,000,000 records. Elapsed time: 00:26:53s. Time for last 1,000,000: 2s. Last read position: chr21:44,228,381
INFO 2026-06-08 09:03:45 MarkDuplicates Tracking 88215 as yet unmatched pairs. 6154 records in RAM.
INFO 2026-06-08 09:03:47 MarkDuplicates Read 608,000,000 records. Elapsed time: 00:26:54s. Time for last 1,000,000: 1s. Last read position: chr21:45,992,378
INFO 2026-06-08 09:03:47 MarkDuplicates Tracking 86085 as yet unmatched pairs. 4020 records in RAM.
INFO 2026-06-08 09:03:49 MarkDuplicates Read 609,000,000 records. Elapsed time: 00:26:56s. Time for last 1,000,000: 1s. Last read position: chr21:46,246,780
INFO 2026-06-08 09:03:49 MarkDuplicates Tracking 82705 as yet unmatched pairs. 640 records in RAM.
INFO 2026-06-08 09:03:51 MarkDuplicates Read 610,000,000 records. Elapsed time: 00:26:58s. Time for last 1,000,000: 2s. Last read position: chr22:20,585,007
INFO 2026-06-08 09:03:51 MarkDuplicates Tracking 80176 as yet unmatched pairs. 27517 records in RAM.
INFO 2026-06-08 09:03:52 MarkDuplicates Read 611,000,000 records. Elapsed time: 00:27:00s. Time for last 1,000,000: 1s. Last read position: chr22:23,782,376
INFO 2026-06-08 09:03:52 MarkDuplicates Tracking 77786 as yet unmatched pairs. 25125 records in RAM.
INFO 2026-06-08 09:03:54 MarkDuplicates Read 612,000,000 records. Elapsed time: 00:27:01s. Time for last 1,000,000: 1s. Last read position: chr22:29,278,138
INFO 2026-06-08 09:03:54 MarkDuplicates Tracking 74968 as yet unmatched pairs. 22307 records in RAM.
INFO 2026-06-08 09:03:55 MarkDuplicates Read 613,000,000 records. Elapsed time: 00:27:03s. Time for last 1,000,000: 1s. Last read position: chr22:31,091,783
INFO 2026-06-08 09:03:55 MarkDuplicates Tracking 72043 as yet unmatched pairs. 19379 records in RAM.
INFO 2026-06-08 09:03:57 MarkDuplicates Read 614,000,000 records. Elapsed time: 00:27:04s. Time for last 1,000,000: 1s. Last read position: chr22:36,285,681
INFO 2026-06-08 09:03:57 MarkDuplicates Tracking 70501 as yet unmatched pairs. 17833 records in RAM.
INFO 2026-06-08 09:03:59 MarkDuplicates Read 615,000,000 records. Elapsed time: 00:27:06s. Time for last 1,000,000: 1s. Last read position: chr22:37,024,677
INFO 2026-06-08 09:03:59 MarkDuplicates Tracking 66640 as yet unmatched pairs. 13967 records in RAM.
INFO 2026-06-08 09:04:01 MarkDuplicates Read 616,000,000 records. Elapsed time: 00:27:08s. Time for last 1,000,000: 2s. Last read position: chr22:38,487,996
INFO 2026-06-08 09:04:01 MarkDuplicates Tracking 64559 as yet unmatched pairs. 11886 records in RAM.
INFO 2026-06-08 09:04:02 MarkDuplicates Read 617,000,000 records. Elapsed time: 00:27:10s. Time for last 1,000,000: 1s. Last read position: chr22:41,149,856
INFO 2026-06-08 09:04:02 MarkDuplicates Tracking 61015 as yet unmatched pairs. 8339 records in RAM.
INFO 2026-06-08 09:04:04 MarkDuplicates Read 618,000,000 records. Elapsed time: 00:27:12s. Time for last 1,000,000: 2s. Last read position: chr22:42,693,048
INFO 2026-06-08 09:04:04 MarkDuplicates Tracking 58349 as yet unmatched pairs. 5673 records in RAM.
INFO 2026-06-08 09:04:07 MarkDuplicates Read 619,000,000 records. Elapsed time: 00:27:14s. Time for last 1,000,000: 2s. Last read position: chr22:50,220,797
INFO 2026-06-08 09:04:07 MarkDuplicates Tracking 55615 as yet unmatched pairs. 2938 records in RAM.
INFO 2026-06-08 09:04:09 MarkDuplicates Read 620,000,000 records. Elapsed time: 00:27:16s. Time for last 1,000,000: 1s. Last read position: chrX:1,392,033
INFO 2026-06-08 09:04:09 MarkDuplicates Tracking 52190 as yet unmatched pairs. 46808 records in RAM.
INFO 2026-06-08 09:04:10 MarkDuplicates Read 621,000,000 records. Elapsed time: 00:27:17s. Time for last 1,000,000: 1s. Last read position: chrX:10,459,645
INFO 2026-06-08 09:04:10 MarkDuplicates Tracking 49713 as yet unmatched pairs. 44331 records in RAM.
INFO 2026-06-08 09:04:12 MarkDuplicates Read 622,000,000 records. Elapsed time: 00:27:19s. Time for last 1,000,000: 1s. Last read position: chrX:23,671,626
INFO 2026-06-08 09:04:12 MarkDuplicates Tracking 47938 as yet unmatched pairs. 42549 records in RAM.
INFO 2026-06-08 09:04:13 MarkDuplicates Read 623,000,000 records. Elapsed time: 00:27:21s. Time for last 1,000,000: 1s. Last read position: chrX:40,597,334
INFO 2026-06-08 09:04:13 MarkDuplicates Tracking 45260 as yet unmatched pairs. 39870 records in RAM.
INFO 2026-06-08 09:04:15 MarkDuplicates Read 624,000,000 records. Elapsed time: 00:27:22s. Time for last 1,000,000: 1s. Last read position: chrX:47,179,474
INFO 2026-06-08 09:04:15 MarkDuplicates Tracking 42569 as yet unmatched pairs. 37179 records in RAM.
INFO 2026-06-08 09:04:17 MarkDuplicates Read 625,000,000 records. Elapsed time: 00:27:24s. Time for last 1,000,000: 1s. Last read position: chrX:48,576,410
INFO 2026-06-08 09:04:17 MarkDuplicates Tracking 40510 as yet unmatched pairs. 35120 records in RAM.
INFO 2026-06-08 09:04:19 MarkDuplicates Read 626,000,000 records. Elapsed time: 00:27:26s. Time for last 1,000,000: 1s. Last read position: chrX:53,193,214
INFO 2026-06-08 09:04:19 MarkDuplicates Tracking 37314 as yet unmatched pairs. 31924 records in RAM.
INFO 2026-06-08 09:04:20 MarkDuplicates Read 627,000,000 records. Elapsed time: 00:27:27s. Time for last 1,000,000: 1s. Last read position: chrX:54,815,377
INFO 2026-06-08 09:04:20 MarkDuplicates Tracking 34868 as yet unmatched pairs. 29477 records in RAM.
INFO 2026-06-08 09:04:22 MarkDuplicates Read 628,000,000 records. Elapsed time: 00:27:29s. Time for last 1,000,000: 1s. Last read position: chrX:71,107,782
INFO 2026-06-08 09:04:22 MarkDuplicates Tracking 34110 as yet unmatched pairs. 28719 records in RAM.
INFO 2026-06-08 09:04:24 MarkDuplicates Read 629,000,000 records. Elapsed time: 00:27:32s. Time for last 1,000,000: 2s. Last read position: chrX:72,351,768
INFO 2026-06-08 09:04:24 MarkDuplicates Tracking 30219 as yet unmatched pairs. 24828 records in RAM.
INFO 2026-06-08 09:04:26 MarkDuplicates Read 630,000,000 records. Elapsed time: 00:27:34s. Time for last 1,000,000: 1s. Last read position: chrX:81,202,213
INFO 2026-06-08 09:04:26 MarkDuplicates Tracking 28556 as yet unmatched pairs. 23164 records in RAM.
INFO 2026-06-08 09:04:28 MarkDuplicates Read 631,000,000 records. Elapsed time: 00:27:35s. Time for last 1,000,000: 1s. Last read position: chrX:103,676,548
INFO 2026-06-08 09:04:28 MarkDuplicates Tracking 25655 as yet unmatched pairs. 20263 records in RAM.
INFO 2026-06-08 09:04:30 MarkDuplicates Read 632,000,000 records. Elapsed time: 00:27:37s. Time for last 1,000,000: 1s. Last read position: chrX:119,574,580
INFO 2026-06-08 09:04:30 MarkDuplicates Tracking 23062 as yet unmatched pairs. 17669 records in RAM.
INFO 2026-06-08 09:04:31 MarkDuplicates Read 633,000,000 records. Elapsed time: 00:27:39s. Time for last 1,000,000: 1s. Last read position: chrX:130,067,254
INFO 2026-06-08 09:04:31 MarkDuplicates Tracking 20872 as yet unmatched pairs. 15479 records in RAM.
INFO 2026-06-08 09:04:33 MarkDuplicates Read 634,000,000 records. Elapsed time: 00:27:40s. Time for last 1,000,000: 1s. Last read position: chrX:150,727,683
INFO 2026-06-08 09:04:33 MarkDuplicates Tracking 18440 as yet unmatched pairs. 13046 records in RAM.
INFO 2026-06-08 09:04:35 MarkDuplicates Read 635,000,000 records. Elapsed time: 00:27:42s. Time for last 1,000,000: 1s. Last read position: chrX:153,952,673
INFO 2026-06-08 09:04:35 MarkDuplicates Tracking 16008 as yet unmatched pairs. 10613 records in RAM.
INFO 2026-06-08 09:04:36 MarkDuplicates Read 636,000,000 records. Elapsed time: 00:27:44s. Time for last 1,000,000: 1s. Last read position: chrX:154,353,307
INFO 2026-06-08 09:04:36 MarkDuplicates Tracking 14833 as yet unmatched pairs. 9438 records in RAM.
INFO 2026-06-08 09:04:38 MarkDuplicates Read 637,000,000 records. Elapsed time: 00:27:45s. Time for last 1,000,000: 1s. Last read position: chrX:154,362,500
INFO 2026-06-08 09:04:38 MarkDuplicates Tracking 12205 as yet unmatched pairs. 6809 records in RAM.
INFO 2026-06-08 09:04:40 MarkDuplicates Read 638,000,000 records. Elapsed time: 00:27:47s. Time for last 1,000,000: 1s. Last read position: chrX:154,432,284
INFO 2026-06-08 09:04:40 MarkDuplicates Tracking 8068 as yet unmatched pairs. 2671 records in RAM.
INFO 2026-06-08 09:04:41 MarkDuplicates Read 639,000,000 records. Elapsed time: 00:27:48s. Time for last 1,000,000: 1s. Last read position: chrM:6,995
INFO 2026-06-08 09:04:41 MarkDuplicates Tracking 5319 as yet unmatched pairs. 777 records in RAM.
INFO 2026-06-08 09:04:42 MarkDuplicates Read 640,000,000 records. Elapsed time: 00:27:50s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,084
INFO 2026-06-08 09:04:42 MarkDuplicates Tracking 2342 as yet unmatched pairs. 148 records in RAM.
INFO 2026-06-08 09:04:43 MarkDuplicates Read 641,000,000 records. Elapsed time: 00:27:51s. Time for last 1,000,000: 1s. Last read position: KI270733.1:132,406
INFO 2026-06-08 09:04:43 MarkDuplicates Tracking 821 as yet unmatched pairs. 804 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 642,000,000 records. Elapsed time: 00:27:52s. Time for last 1,000,000: 1s. Last read position: KI270733.1:178,746
INFO 2026-06-08 09:04:45 MarkDuplicates Tracking 22 as yet unmatched pairs. 5 records in RAM.
INFO 2026-06-08 09:04:45 MarkDuplicates Read 642085634 records. 0 pairs never matched.
INFO 2026-06-08 09:05:39 MarkDuplicates After buildSortedReadEndLists freeMemory: 204139768; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:05:39 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 09:05:43 MarkDuplicates Traversing read pair information and detecting duplicates.
WARNING 2026-06-08 09:05:43 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:05:54 OpticalDuplicateFinder Large duplicate set. size = 1081
INFO 2026-06-08 09:05:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,177
INFO 2026-06-08 09:05:54 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 09:05:54 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,489
INFO 2026-06-08 09:05:55 OpticalDuplicateFinder Large duplicate set. size = 1020
INFO 2026-06-08 09:05:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,772
INFO 2026-06-08 09:05:55 OpticalDuplicateFinder Large duplicate set. size = 2551
INFO 2026-06-08 09:05:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,298
INFO 2026-06-08 09:05:55 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,714
INFO 2026-06-08 09:05:55 OpticalDuplicateFinder Large duplicate set. size = 1430
INFO 2026-06-08 09:05:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,870
INFO 2026-06-08 09:05:55 OpticalDuplicateFinder Large duplicate set. size = 1282
INFO 2026-06-08 09:05:55 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,011
INFO 2026-06-08 09:05:56 OpticalDuplicateFinder Large duplicate set. size = 1275
INFO 2026-06-08 09:05:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,869
INFO 2026-06-08 09:05:56 OpticalDuplicateFinder Large duplicate set. size = 1061
INFO 2026-06-08 09:05:56 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,524
INFO 2026-06-08 09:05:58 OpticalDuplicateFinder Large duplicate set. size = 1687
INFO 2026-06-08 09:05:58 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,996
INFO 2026-06-08 09:06:08 OpticalDuplicateFinder Large duplicate set. size = 1124
INFO 2026-06-08 09:06:08 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,262
INFO 2026-06-08 09:06:09 OpticalDuplicateFinder Large duplicate set. size = 2023
INFO 2026-06-08 09:06:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,827
INFO 2026-06-08 09:06:09 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,709
INFO 2026-06-08 09:06:09 OpticalDuplicateFinder Large duplicate set. size = 1046
INFO 2026-06-08 09:06:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,926
INFO 2026-06-08 09:06:09 OpticalDuplicateFinder Large duplicate set. size = 1066
INFO 2026-06-08 09:06:09 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,391
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 1135
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,521
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 1377
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,934
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 1963
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,526
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 1768
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,406
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 2568
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,061
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,567
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 1331
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,044
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,290
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 1132
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,081
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 1930
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,041
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 1234
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,923
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 1105
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,777
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 1262
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,346
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 2374
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,820
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,190
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 2788
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,717
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,631
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 1069
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,474
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 1029
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,932
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 1858
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,320
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder Large duplicate set. size = 1194
INFO 2026-06-08 09:06:18 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,097
INFO 2026-06-08 09:06:19 OpticalDuplicateFinder Large duplicate set. size = 1051
INFO 2026-06-08 09:06:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,278
INFO 2026-06-08 09:06:19 OpticalDuplicateFinder Large duplicate set. size = 1642
INFO 2026-06-08 09:06:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,192
INFO 2026-06-08 09:06:19 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 09:06:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,994
INFO 2026-06-08 09:06:19 OpticalDuplicateFinder Large duplicate set. size = 1004
INFO 2026-06-08 09:06:19 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,181
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 1262
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,192
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder Large duplicate set. size = 1108
INFO 2026-06-08 09:06:28 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,078
INFO 2026-06-08 09:06:29 OpticalDuplicateFinder Large duplicate set. size = 1076
INFO 2026-06-08 09:06:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,670
INFO 2026-06-08 09:06:29 OpticalDuplicateFinder Large duplicate set. size = 1359
INFO 2026-06-08 09:06:29 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,862
INFO 2026-06-08 09:06:36 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 09:06:36 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,668
INFO 2026-06-08 09:06:37 OpticalDuplicateFinder Large duplicate set. size = 1099
INFO 2026-06-08 09:06:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,339
INFO 2026-06-08 09:06:37 OpticalDuplicateFinder Large duplicate set. size = 1173
INFO 2026-06-08 09:06:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,757
INFO 2026-06-08 09:06:37 OpticalDuplicateFinder Large duplicate set. size = 1419
INFO 2026-06-08 09:06:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,325
INFO 2026-06-08 09:06:37 OpticalDuplicateFinder Large duplicate set. size = 1656
INFO 2026-06-08 09:06:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,523
INFO 2026-06-08 09:06:37 OpticalDuplicateFinder Large duplicate set. size = 1747
INFO 2026-06-08 09:06:37 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,771
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder Large duplicate set. size = 1198
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,400
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder Large duplicate set. size = 1219
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,917
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder Large duplicate set. size = 1203
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,467
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder Large duplicate set. size = 1225
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,582
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder Large duplicate set. size = 1186
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,069
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder Large duplicate set. size = 1248
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,796
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder Large duplicate set. size = 1373
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,067
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder Large duplicate set. size = 1342
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,608
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder Large duplicate set. size = 1119
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,759
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder Large duplicate set. size = 1643
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,656
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder Large duplicate set. size = 1021
INFO 2026-06-08 09:06:38 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,043
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder Large duplicate set. size = 1345
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,021
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder Large duplicate set. size = 1109
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,742
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder Large duplicate set. size = 1171
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,797
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder Large duplicate set. size = 1356
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,039
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder Large duplicate set. size = 2231
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,551
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,041
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder Large duplicate set. size = 1784
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,123
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder Large duplicate set. size = 1838
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,079
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder Large duplicate set. size = 1089
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,775
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder Large duplicate set. size = 2033
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,673
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,373
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder Large duplicate set. size = 1250
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,825
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder Large duplicate set. size = 1475
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,923
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder Large duplicate set. size = 1701
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,681
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 09:06:39 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,659
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1043
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,299
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1013
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,677
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1278
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,514
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1267
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,410
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1376
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,920
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1838
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,463
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1167
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,755
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1157
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,582
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1005
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,509
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1078
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,400
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,078
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1502
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,426
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1241
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,513
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 2083
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,003
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,618
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 2265
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,319
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,705
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1099
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,157
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1012
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,670
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1264
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,733
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 2524
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,424
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,365
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1478
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,266
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 2025
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,299
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,659
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,235
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 2153
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,082
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,655
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 3250
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,000
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,305
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,173
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1474
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,452
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 2931
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,699
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,751
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1428
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,642
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1596
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,922
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1075
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,138
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1995
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,364
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1667
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,909
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 4669
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,858
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,513
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,820
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,351
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1084
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,482
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1287
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,232
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 5513
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,804
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,936
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,958
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,398
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 5,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,136
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1558
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,736
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 2134
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,495
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,298
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 2755
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,666
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,299
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 2108
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,435
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,301
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1015
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,944
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,607
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 2836
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,535
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,113
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1091
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,969
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1291
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,156
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1211
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,778
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1914
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,453
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 2423
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,741
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,686
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1186
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,168
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1226
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,030
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1292
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,850
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder Large duplicate set. size = 1491
INFO 2026-06-08 09:06:40 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,876
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1095
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,676
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1805
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,463
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 2064
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,965
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,692
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1009
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,758
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1243
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,365
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1017
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,378
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1153
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,054
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 4147
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,114
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,144
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,114
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,806
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1332
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,507
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1310
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,127
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1030
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,709
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 3299
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,760
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,233
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,502
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1173
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,372
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1168
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,779
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1212
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,699
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1250
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,334
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1277
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,337
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1008
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,817
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1144
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,252
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1865
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,116
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 4020
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,441
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,055
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,562
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 4,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,224
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 2231
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,678
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,754
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,596
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1103
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,417
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1236
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,233
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1249
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,678
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1230
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,371
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1280
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,296
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1479
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,807
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1180
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,233
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1373
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,664
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1305
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,623
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder Large duplicate set. size = 1002
INFO 2026-06-08 09:06:41 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,451
INFO 2026-06-08 09:06:42 OpticalDuplicateFinder Large duplicate set. size = 1242
INFO 2026-06-08 09:06:42 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,580
INFO 2026-06-08 09:06:45 OpticalDuplicateFinder Large duplicate set. size = 1336
INFO 2026-06-08 09:06:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,015
INFO 2026-06-08 09:06:46 OpticalDuplicateFinder Large duplicate set. size = 1053
INFO 2026-06-08 09:06:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,087
INFO 2026-06-08 09:06:46 OpticalDuplicateFinder Large duplicate set. size = 1311
INFO 2026-06-08 09:06:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,240
INFO 2026-06-08 09:06:46 OpticalDuplicateFinder Large duplicate set. size = 1583
INFO 2026-06-08 09:06:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,634
INFO 2026-06-08 09:06:46 OpticalDuplicateFinder Large duplicate set. size = 1915
INFO 2026-06-08 09:06:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,959
INFO 2026-06-08 09:06:46 OpticalDuplicateFinder Large duplicate set. size = 1467
INFO 2026-06-08 09:06:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,371
INFO 2026-06-08 09:06:46 OpticalDuplicateFinder Large duplicate set. size = 1461
INFO 2026-06-08 09:06:46 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-24,458
INFO 2026-06-08 09:07:10 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 09:07:10 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 09:08:14 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 09:08:15 MarkDuplicates After generateDuplicateIndexes freeMemory: 203879392; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:08:15 MarkDuplicates Marking 283633985 records as duplicates.
INFO 2026-06-08 09:08:15 MarkDuplicates Found 10134961 optical duplicate clusters.
INFO 2026-06-08 09:08:15 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 09:08:33 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:17s. Time for last 10,000,000: 17s. Last read position: chr1:23,693,810
INFO 2026-06-08 09:08:50 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:35s. Time for last 10,000,000: 17s. Last read position: chr1:51,765,849
INFO 2026-06-08 09:09:08 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:52s. Time for last 10,000,000: 17s. Last read position: chr1:147,287,653
INFO 2026-06-08 09:09:25 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:09s. Time for last 10,000,000: 17s. Last read position: chr1:160,211,601
INFO 2026-06-08 09:09:42 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:27s. Time for last 10,000,000: 17s. Last read position: chr1:206,648,689
INFO 2026-06-08 09:10:00 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:45s. Time for last 10,000,000: 17s. Last read position: chr2:27,083,631
INFO 2026-06-08 09:10:17 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:02:02s. Time for last 10,000,000: 17s. Last read position: chr2:55,549,928
INFO 2026-06-08 09:10:35 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:20s. Time for last 10,000,000: 17s. Last read position: chr2:113,596,408
INFO 2026-06-08 09:10:54 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:38s. Time for last 10,000,000: 18s. Last read position: chr2:178,621,648
INFO 2026-06-08 09:11:12 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:56s. Time for last 10,000,000: 17s. Last read position: chr2:215,367,981
INFO 2026-06-08 09:11:29 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:03:14s. Time for last 10,000,000: 17s. Last read position: chr2:216,499,379
INFO 2026-06-08 09:11:47 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:31s. Time for last 10,000,000: 17s. Last read position: chr3:12,936,216
INFO 2026-06-08 09:12:05 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:50s. Time for last 10,000,000: 18s. Last read position: chr3:57,896,889
INFO 2026-06-08 09:12:22 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:04:07s. Time for last 10,000,000: 17s. Last read position: chr3:149,371,820
INFO 2026-06-08 09:12:39 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:04:24s. Time for last 10,000,000: 17s. Last read position: chr3:196,472,419
INFO 2026-06-08 09:12:57 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:41s. Time for last 10,000,000: 17s. Last read position: chr4:84,778,514
INFO 2026-06-08 09:13:14 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:59s. Time for last 10,000,000: 17s. Last read position: chr5:14,741,869
INFO 2026-06-08 09:13:32 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:05:16s. Time for last 10,000,000: 17s. Last read position: chr5:136,060,902
INFO 2026-06-08 09:13:49 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:33s. Time for last 10,000,000: 17s. Last read position: chr5:179,724,714
INFO 2026-06-08 09:14:06 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:50s. Time for last 10,000,000: 16s. Last read position: chr6:31,816,385
INFO 2026-06-08 09:14:23 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:06:07s. Time for last 10,000,000: 16s. Last read position: chr6:57,148,293
INFO 2026-06-08 09:14:40 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:06:25s. Time for last 10,000,000: 17s. Last read position: chr6:158,503,381
INFO 2026-06-08 09:14:57 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:42s. Time for last 10,000,000: 16s. Last read position: chr7:32,559,172
INFO 2026-06-08 09:15:14 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:59s. Time for last 10,000,000: 17s. Last read position: chr7:94,413,133
INFO 2026-06-08 09:15:31 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:07:16s. Time for last 10,000,000: 16s. Last read position: chr7:100,997,602
INFO 2026-06-08 09:15:49 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:07:33s. Time for last 10,000,000: 17s. Last read position: chr7:107,159,447
INFO 2026-06-08 09:16:06 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:51s. Time for last 10,000,000: 17s. Last read position: chr7:155,298,368
INFO 2026-06-08 09:16:23 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:08:08s. Time for last 10,000,000: 17s. Last read position: chr8:92,017,272
INFO 2026-06-08 09:16:40 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:08:24s. Time for last 10,000,000: 16s. Last read position: chr8:143,864,936
INFO 2026-06-08 09:16:58 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:43s. Time for last 10,000,000: 18s. Last read position: chr9:76,708,729
INFO 2026-06-08 09:17:15 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:09:00s. Time for last 10,000,000: 17s. Last read position: chr9:130,372,357
INFO 2026-06-08 09:17:32 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:09:17s. Time for last 10,000,000: 17s. Last read position: chr10:32,034,029
INFO 2026-06-08 09:17:49 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:34s. Time for last 10,000,000: 17s. Last read position: chr10:80,168,987
INFO 2026-06-08 09:18:06 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:51s. Time for last 10,000,000: 17s. Last read position: chr11:674,740
INFO 2026-06-08 09:18:23 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:10:08s. Time for last 10,000,000: 17s. Last read position: chr11:47,839,982
INFO 2026-06-08 09:18:40 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:25s. Time for last 10,000,000: 16s. Last read position: chr11:65,654,702
INFO 2026-06-08 09:18:57 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:42s. Time for last 10,000,000: 17s. Last read position: chr11:111,753,553
INFO 2026-06-08 09:19:15 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:00s. Time for last 10,000,000: 17s. Last read position: chr12:12,162,262
INFO 2026-06-08 09:19:32 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:17s. Time for last 10,000,000: 17s. Last read position: chr12:56,117,492
INFO 2026-06-08 09:19:49 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:34s. Time for last 10,000,000: 17s. Last read position: chr12:104,325,421
INFO 2026-06-08 09:20:06 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:11:51s. Time for last 10,000,000: 17s. Last read position: chr13:37,029,767
INFO 2026-06-08 09:20:24 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:08s. Time for last 10,000,000: 17s. Last read position: chr14:23,062,247
INFO 2026-06-08 09:20:41 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:26s. Time for last 10,000,000: 17s. Last read position: chr14:82,692,763
INFO 2026-06-08 09:20:58 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:12:43s. Time for last 10,000,000: 17s. Last read position: chr15:34,934,570
INFO 2026-06-08 09:21:16 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:01s. Time for last 10,000,000: 18s. Last read position: chr15:66,501,499
INFO 2026-06-08 09:21:34 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:19s. Time for last 10,000,000: 17s. Last read position: chr16:1,209,105
INFO 2026-06-08 09:21:51 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:13:36s. Time for last 10,000,000: 16s. Last read position: chr16:18,350,074
INFO 2026-06-08 09:22:08 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:13:53s. Time for last 10,000,000: 17s. Last read position: chr16:31,180,152
INFO 2026-06-08 09:22:26 MarkDuplicates Written 490,000,000 records. Elapsed time: 00:14:10s. Time for last 10,000,000: 17s. Last read position: chr16:87,412,678
INFO 2026-06-08 09:22:43 MarkDuplicates Written 500,000,000 records. Elapsed time: 00:14:27s. Time for last 10,000,000: 17s. Last read position: chr17:19,003,835
INFO 2026-06-08 09:23:00 MarkDuplicates Written 510,000,000 records. Elapsed time: 00:14:44s. Time for last 10,000,000: 17s. Last read position: chr17:47,916,504
INFO 2026-06-08 09:23:16 MarkDuplicates Written 520,000,000 records. Elapsed time: 00:15:01s. Time for last 10,000,000: 16s. Last read position: chr17:50,192,676
INFO 2026-06-08 09:23:33 MarkDuplicates Written 530,000,000 records. Elapsed time: 00:15:18s. Time for last 10,000,000: 16s. Last read position: chr17:59,664,798
INFO 2026-06-08 09:23:50 MarkDuplicates Written 540,000,000 records. Elapsed time: 00:15:35s. Time for last 10,000,000: 17s. Last read position: chr18:23,554,793
INFO 2026-06-08 09:24:08 MarkDuplicates Written 550,000,000 records. Elapsed time: 00:15:53s. Time for last 10,000,000: 17s. Last read position: chr19:8,305,093
INFO 2026-06-08 09:24:25 MarkDuplicates Written 560,000,000 records. Elapsed time: 00:16:10s. Time for last 10,000,000: 17s. Last read position: chr19:34,959,189
INFO 2026-06-08 09:24:42 MarkDuplicates Written 570,000,000 records. Elapsed time: 00:16:27s. Time for last 10,000,000: 17s. Last read position: chr19:41,719,998
INFO 2026-06-08 09:24:59 MarkDuplicates Written 580,000,000 records. Elapsed time: 00:16:44s. Time for last 10,000,000: 17s. Last read position: chr19:50,259,198
INFO 2026-06-08 09:25:16 MarkDuplicates Written 590,000,000 records. Elapsed time: 00:17:01s. Time for last 10,000,000: 17s. Last read position: chr20:35,627,339
INFO 2026-06-08 09:25:34 MarkDuplicates Written 600,000,000 records. Elapsed time: 00:17:18s. Time for last 10,000,000: 17s. Last read position: chr20:63,565,654
INFO 2026-06-08 09:25:50 MarkDuplicates Written 610,000,000 records. Elapsed time: 00:17:35s. Time for last 10,000,000: 16s. Last read position: chr22:20,585,007
INFO 2026-06-08 09:26:08 MarkDuplicates Written 620,000,000 records. Elapsed time: 00:17:52s. Time for last 10,000,000: 17s. Last read position: chrX:1,392,033
INFO 2026-06-08 09:26:25 MarkDuplicates Written 630,000,000 records. Elapsed time: 00:18:10s. Time for last 10,000,000: 17s. Last read position: chrX:81,202,213
INFO 2026-06-08 09:26:42 MarkDuplicates Written 640,000,000 records. Elapsed time: 00:18:26s. Time for last 10,000,000: 16s. Last read position: GL000220.1:158,084
INFO 2026-06-08 09:26:53 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 09:26:53 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 09:26:53 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 09:26:53 MarkDuplicates Before output close freeMemory: 203823496; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 09:26:53 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 09:26:53 MarkDuplicates After output close freeMemory: 104077704; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 09:26:53 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 50.05 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory