[W::hts_idx_load3] The index file is older than the data file: 659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	316944653
Known Splicing Events:	311036466
Partial Novel Splicing Events:	1715133
Novel Splicing Events:	4048764
Filtered Splicing Events:	144290

Total splicing  Junctions:	555362
Known Splicing Junctions:	264018
Partial Novel Splicing Junctions:	152642
Novel Splicing Junctions:	138702

===================================================================
Create BED file ...
Create Interact file ...