Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/37552cd86f5bcbd073c8051dd359aa/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/37552cd86f5bcbd073c8051dd359aa/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/dde4de080fccda79d1586d5ef24e0f/659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ef/ecd326546f2f66e7990b3d1c9b38e3/659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 316944653
[W::hts_idx_load3] The index file is older than the data file: 659_bKP-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	316944653
Known Splicing Events:	311036466
Partial Novel Splicing Events:	1715133
Novel Splicing Events:	4048764
Filtered Splicing Events:	144290

Total splicing  Junctions:	555362
Known Splicing Junctions:	264018
Partial Novel Splicing Junctions:	152642
Novel Splicing Junctions:	138702

===================================================================
Create BED file ...
Create Interact file ...