.command.out - Workdir - NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (FFPE_HD789_02_RNA_0015_B23MHV2LT4_1)

File Info

Filename: .command.out
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/e37894cf1da16d3464757c38b67e48/.command.out
Size: 344 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (FFPE_HD789_02_RNA_0015_B23MHV2LT4_1)
Attempt

Content

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  FFPE_HD789_02_RNA_0015_B23MHV2LT4_1: vaf_p90=0.715114 -> CONTAMINATED (~61.3%)

Output saved to: FFPE_HD789_02_RNA_0015_B23MHV2LT4_1.predictions.csv
Summary: 1/1 samples flagged as contaminated