Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/09/fb27981969f3d726cc626b791954da/fi_workdir/659_dRe-T1-TRNA-1_B23MHV2LT4_1.gtf
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/eb04cf9565e5dfe9dd66fa4be74f70/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/eb04cf9565e5dfe9dd66fa4be74f70/.command.run
==> STAGING COMPLETE (3 inputs)
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 7202
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 7202
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => exon CDS
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:7202
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC015911.9--SLFN12L HAVANA mRNA 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^ENST00000260908.12" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC092821.3--CLEC2D HAVANA gene 19961 27393 . + . FI_gene_label "CLEC2D^ENSG00000069493.15" ; ID "AC092821.3--CLEC2D^CLEC2D^ENSG00000069493.15" ; ccdsid "CCDS55801.1" ; exon_id "ENSE00001145753.7" ; exon_number 1 ; gene_id "AC092821.3--CLEC2D^CLEC2D^ENSG00000069493.15" ; gene_name CLEC2D ; gene_type protein_coding ; havana_gene "OTTHUMG00000168369.9" ; havana_transcript "OTTHUMT00000400261.2" ; hgnc_id "HGNC:14351" ; level 2 ; orig_coord_info "chr12,9669735,9669795,+" ; protein_id "ENSP00000261339.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "AC092821.3--CLEC2D^ENST00000261339.10" ; transcript_name "CLEC2D-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC092821.3--CLEC2D HAVANA mRNA 19961 27393 . + . FI_gene_label "CLEC2D^ENSG00000069493.15" ; ID "AC092821.3--CLEC2D^ENST00000261339.10" ; Parent "AC092821.3--CLEC2D^CLEC2D^ENSG00000069493.15" ; ccdsid "CCDS55801.1" ; exon_id "ENSE00001145753.7" ; exon_number 1 ; gene_id "AC092821.3--CLEC2D^CLEC2D^ENSG00000069493.15" ; gene_name CLEC2D ; gene_type protein_coding ; havana_gene "OTTHUMG00000168369.9" ; havana_transcript "OTTHUMT00000400261.2" ; hgnc_id "HGNC:14351" ; level 2 ; orig_coord_info "chr12,9669735,9669795,+" ; protein_id "ENSP00000261339.6" ; tag basic appris_alternative_2 CCDS ; transcript_id "AC092821.3--CLEC2D^ENST00000261339.10" ; transcript_name "CLEC2D-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC096582.2--SEPTIN14 HAVANA gene 4520 18067 . + . FI_gene_label "SEPTIN14^ENSG00000154997.9" ; ID "AC096582.2--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; ccdsid "CCDS5519.2" ; exon_id "ENSE00003671928.1" ; exon_number 2 ; gene_id "AC096582.2--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; gene_name SEPTIN14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129341.4" ; havana_transcript "OTTHUMT00000251489.3" ; hgnc_id "HGNC:33280" ; level 2 ; orig_coord_info "chr7,55861943,55861996,-" ; protein_id "ENSP00000373627.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC096582.2--SEPTIN14^ENST00000388975.4" ; transcript_name "SEPTIN14-201" ; transcript_support_level 2 ; transcript_type protein_coding
AC096582.2--SEPTIN14 HAVANA mRNA 4520 18067 . + . FI_gene_label "SEPTIN14^ENSG00000154997.9" ; ID "AC096582.2--SEPTIN14^ENST00000388975.4" ; Parent "AC096582.2--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; ccdsid "CCDS5519.2" ; exon_id "ENSE00003671928.1" ; exon_number 2 ; gene_id "AC096582.2--SEPTIN14^SEPTIN14^ENSG00000154997.9" ; gene_name SEPTIN14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129341.4" ; havana_transcript "OTTHUMT00000251489.3" ; hgnc_id "HGNC:33280" ; level 2 ; orig_coord_info "chr7,55861943,55861996,-" ; protein_id "ENSP00000373627.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "AC096582.2--SEPTIN14^ENST00000388975.4" ; transcript_name "SEPTIN14-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
AGAP4--FRMPD2 HAVANA gene 16607 51608 . + . FI_gene_label "FRMPD2^ENSG00000170324.21" ; ID "AGAP4--FRMPD2^FRMPD2^ENSG00000170324.21" ; ccdsid "CCDS81460.1" ; exon_id "ENSE00001390154.1" ; exon_number 1 ; gene_id "AGAP4--FRMPD2^FRMPD2^ENSG00000170324.21" ; gene_name FRMPD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018171.7" ; havana_transcript "OTTHUMT00000277029.1" ; hgnc_id "HGNC:28572" ; level 2 ; orig_coord_info "chr10,48251566,48251710,-" ; protein_id "ENSP00000307079.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "AGAP4--FRMPD2^ENST00000305531.3" ; transcript_name "FRMPD2-201" ; transcript_support_level 5 ; transcript_type protein_coding
AGAP4--FRMPD2 HAVANA mRNA 16607 51608 . + . FI_gene_label "FRMPD2^ENSG00000170324.21" ; ID "AGAP4--FRMPD2^ENST00000305531.3" ; Parent "AGAP4--FRMPD2^FRMPD2^ENSG00000170324.21" ; ccdsid "CCDS81460.1" ; exon_id "ENSE00001390154.1" ; exon_number 1 ; gene_id "AGAP4--FRMPD2^FRMPD2^ENSG00000170324.21" ; gene_name FRMPD2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018171.7" ; havana_transcript "OTTHUMT00000277029.1" ; hgnc_id "HGNC:28572" ; level 2 ; orig_coord_info "chr10,48251566,48251710,-" ; protein_id "ENSP00000307079.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "AGAP4--FRMPD2^ENST00000305531.3" ; transcript_name "FRMPD2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AGAP4--FRMPD2 HAVANA gene 3661 12452 . + . FI_gene_label "AGAP4^ENSG00000188234.14" ; ID "AGAP4--FRMPD2^AGAP4^ENSG00000188234.14" ; ccdsid "CCDS7215.1" ; exon_id "ENSE00002443810.1" ; exon_number 1 ; gene_id "AGAP4--FRMPD2^AGAP4^ENSG00000188234.14" ; gene_name AGAP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018088.2" ; havana_transcript "OTTHUMT00000047799.1" ; hgnc_id "HGNC:23459" ; level 2 ; orig_coord_info "chr10,45847125,45847347,-" ; protein_id "ENSP00000392513.2" ; tag basic appris_principal_2 CCDS ; transcript_id "AGAP4--FRMPD2^ENST00000448048.7" ; transcript_name "AGAP4-202" ; transcript_support_level 1 ; transcript_type protein_coding
AGAP4--FRMPD2 HAVANA mRNA 3661 12452 . + . FI_gene_label "AGAP4^ENSG00000188234.14" ; ID "AGAP4--FRMPD2^ENST00000448048.7" ; Parent "AGAP4--FRMPD2^AGAP4^ENSG00000188234.14" ; ccdsid "CCDS7215.1" ; exon_id "ENSE00002443810.1" ; exon_number 1 ; gene_id "AGAP4--FRMPD2^AGAP4^ENSG00000188234.14" ; gene_name AGAP4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018088.2" ; havana_transcript "OTTHUMT00000047799.1" ; hgnc_id "HGNC:23459" ; level 2 ; orig_coord_info "chr10,45847125,45847347,-" ; protein_id "ENSP00000392513.2" ; tag basic appris_principal_2 CCDS ; transcript_id "AGAP4--FRMPD2^ENST00000448048.7" ; transcript_name "AGAP4-202" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BTBD9--DNAH8 HAVANA gene 4762 25537 . + . FI_gene_label "BTBD9^ENSG00000183826.18" ; ID "BTBD9--DNAH8^BTBD9^ENSG00000183826.18" ; ccdsid "CCDS43458.1" ; exon_id "ENSE00003787473.1" ; exon_number 2 ; gene_id "BTBD9--DNAH8^BTBD9^ENSG00000183826.18" ; gene_name BTBD9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014634.10" ; havana_transcript "OTTHUMT00000040432.2" ; hgnc_id "HGNC:21228" ; level 2 ; orig_coord_info "chr6,38593964,38594308,-" ; protein_id "ENSP00000323408.6" ; tag basic CCDS ; transcript_id "BTBD9--DNAH8^ENST00000314100.10" ; transcript_name "BTBD9-201" ; transcript_support_level 1 ; transcript_type protein_coding
BTBD9--DNAH8 HAVANA mRNA 4762 25537 . + . FI_gene_label "BTBD9^ENSG00000183826.18" ; ID "BTBD9--DNAH8^ENST00000314100.10" ; Parent "BTBD9--DNAH8^BTBD9^ENSG00000183826.18" ; ccdsid "CCDS43458.1" ; exon_id "ENSE00003787473.1" ; exon_number 2 ; gene_id "BTBD9--DNAH8^BTBD9^ENSG00000183826.18" ; gene_name BTBD9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014634.10" ; havana_transcript "OTTHUMT00000040432.2" ; hgnc_id "HGNC:21228" ; level 2 ; orig_coord_info "chr6,38593964,38594308,-" ; protein_id "ENSP00000323408.6" ; tag basic CCDS ; transcript_id "BTBD9--DNAH8^ENST00000314100.10" ; transcript_name "BTBD9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BTBD9--DNAH8 HAVANA gene 28538 126574 . + . FI_gene_label "DNAH8^ENSG00000124721.18" ; ID "BTBD9--DNAH8^DNAH8^ENSG00000124721.18" ; ccdsid "CCDS75447.1" ; exon_id "ENSE00001878919.1" ; exon_number 2 ; gene_id "BTBD9--DNAH8^DNAH8^ENSG00000124721.18" ; gene_name DNAH8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016253.6" ; havana_transcript "OTTHUMT00000043575.4" ; hgnc_id "HGNC:2952" ; level 1 ; orig_coord_info "chr6,38722810,38723199,+" ; protein_id "ENSP00000333363.7" ; tag not_organism_supported basic MANE_Select appris_principal_2 exp_conf CCDS ; transcript_id "BTBD9--DNAH8^ENST00000327475.11" ; transcript_name "DNAH8-201" ; transcript_support_level 5 ; transcript_type protein_coding
BTBD9--DNAH8 HAVANA mRNA 28538 126574 . + . FI_gene_label "DNAH8^ENSG00000124721.18" ; ID "BTBD9--DNAH8^ENST00000327475.11" ; Parent "BTBD9--DNAH8^DNAH8^ENSG00000124721.18" ; ccdsid "CCDS75447.1" ; exon_id "ENSE00001878919.1" ; exon_number 2 ; gene_id "BTBD9--DNAH8^DNAH8^ENSG00000124721.18" ; gene_name DNAH8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000016253.6" ; havana_transcript "OTTHUMT00000043575.4" ; hgnc_id "HGNC:2952" ; level 1 ; orig_coord_info "chr6,38722810,38723199,+" ; protein_id "ENSP00000333363.7" ; tag not_organism_supported basic MANE_Select appris_principal_2 exp_conf CCDS ; transcript_id "BTBD9--DNAH8^ENST00000327475.11" ; transcript_name "DNAH8-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
C8orf88--AC016868.1 HAVANA gene 1001 7041 . + . FI_gene_label "C8orf88^ENSG00000253250.3" ; ID "C8orf88--AC016868.1^C8orf88^ENSG00000253250.3" ; ccdsid "CCDS59105.1" ; exon_id "ENSE00002094130.1" ; exon_number 2 ; gene_id "C8orf88--AC016868.1^C8orf88^ENSG00000253250.3" ; gene_name C8orf88 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164011.3" ; havana_transcript "OTTHUMT00000376735.3" ; hgnc_id "HGNC:44672" ; level 1 ; orig_coord_info "chr8,90980363,90980435,-" ; protein_id "ENSP00000454561.1" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "C8orf88--AC016868.1^ENST00000517562.3" ; transcript_name "C8orf88-201" ; transcript_support_level 2 ; transcript_type protein_coding
C8orf88--AC016868.1 HAVANA mRNA 1001 7041 . + . FI_gene_label "C8orf88^ENSG00000253250.3" ; ID "C8orf88--AC016868.1^ENST00000517562.3" ; Parent "C8orf88--AC016868.1^C8orf88^ENSG00000253250.3" ; ccdsid "CCDS59105.1" ; exon_id "ENSE00002094130.1" ; exon_number 2 ; gene_id "C8orf88--AC016868.1^C8orf88^ENSG00000253250.3" ; gene_name C8orf88 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164011.3" ; havana_transcript "OTTHUMT00000376735.3" ; hgnc_id "HGNC:44672" ; level 1 ; orig_coord_info "chr8,90980363,90980435,-" ; protein_id "ENSP00000454561.1" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "C8orf88--AC016868.1^ENST00000517562.3" ; transcript_name "C8orf88-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
C8orf88--GOLGA7 HAVANA gene 10228 17515 . + . FI_gene_label "GOLGA7^ENSG00000147533.17" ; ID "C8orf88--GOLGA7^GOLGA7^ENSG00000147533.17" ; ccdsid "CCDS34887.1" ; exon_id "ENSE00001527013.2" ; exon_number 1 ; gene_id "C8orf88--GOLGA7^GOLGA7^ENSG00000147533.17" ; gene_name GOLGA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164077.2" ; havana_transcript "OTTHUMT00000377142.2" ; hgnc_id "HGNC:24876" ; level 2 ; orig_coord_info "chr8,41490855,41490965,+" ; protein_id "ENSP00000350378.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "C8orf88--GOLGA7^ENST00000357743.9" ; transcript_name "GOLGA7-201" ; transcript_support_level 1 ; transcript_type protein_coding
C8orf88--GOLGA7 HAVANA mRNA 10228 17515 . + . FI_gene_label "GOLGA7^ENSG00000147533.17" ; ID "C8orf88--GOLGA7^ENST00000357743.9" ; Parent "C8orf88--GOLGA7^GOLGA7^ENSG00000147533.17" ; ccdsid "CCDS34887.1" ; exon_id "ENSE00001527013.2" ; exon_number 1 ; gene_id "C8orf88--GOLGA7^GOLGA7^ENSG00000147533.17" ; gene_name GOLGA7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164077.2" ; havana_transcript "OTTHUMT00000377142.2" ; hgnc_id "HGNC:24876" ; level 2 ; orig_coord_info "chr8,41490855,41490965,+" ; protein_id "ENSP00000350378.4" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "C8orf88--GOLGA7^ENST00000357743.9" ; transcript_name "GOLGA7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
C8orf88--GOLGA7 HAVANA gene 1001 7041 . + . FI_gene_label "C8orf88^ENSG00000253250.3" ; ID "C8orf88--GOLGA7^C8orf88^ENSG00000253250.3" ; ccdsid "CCDS59105.1" ; exon_id "ENSE00002094130.1" ; exon_number 2 ; gene_id "C8orf88--GOLGA7^C8orf88^ENSG00000253250.3" ; gene_name C8orf88 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164011.3" ; havana_transcript "OTTHUMT00000376735.3" ; hgnc_id "HGNC:44672" ; level 1 ; orig_coord_info "chr8,90980363,90980435,-" ; protein_id "ENSP00000454561.1" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "C8orf88--GOLGA7^ENST00000517562.3" ; transcript_name "C8orf88-201" ; transcript_support_level 2 ; transcript_type protein_coding
C8orf88--GOLGA7 HAVANA mRNA 1001 7041 . + . FI_gene_label "C8orf88^ENSG00000253250.3" ; ID "C8orf88--GOLGA7^ENST00000517562.3" ; Parent "C8orf88--GOLGA7^C8orf88^ENSG00000253250.3" ; ccdsid "CCDS59105.1" ; exon_id "ENSE00002094130.1" ; exon_number 2 ; gene_id "C8orf88--GOLGA7^C8orf88^ENSG00000253250.3" ; gene_name C8orf88 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164011.3" ; havana_transcript "OTTHUMT00000376735.3" ; hgnc_id "HGNC:44672" ; level 1 ; orig_coord_info "chr8,90980363,90980435,-" ; protein_id "ENSP00000454561.1" ; tag basic MANE_Select appris_principal_1 exp_conf CCDS ; transcript_id "C8orf88--GOLGA7^ENST00000517562.3" ; transcript_name "C8orf88-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
CATSPERB--TC2N HAVANA gene 4385 35473 . + . FI_gene_label "CATSPERB^ENSG00000133962.8" ; ID "CATSPERB--TC2N^CATSPERB^ENSG00000133962.8" ; ccdsid "CCDS32142.1" ; exon_id "ENSE00001420708.1" ; exon_number 2 ; gene_id "CATSPERB--TC2N^CATSPERB^ENSG00000133962.8" ; gene_name CATSPERB ; gene_type protein_coding ; havana_gene "OTTHUMG00000171118.3" ; havana_transcript "OTTHUMT00000411769.2" ; hgnc_id "HGNC:20500" ; level 2 ; orig_coord_info "chr14,91729401,91729479,-" ; protein_id "ENSP00000256343.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CATSPERB--TC2N^ENST00000256343.8" ; transcript_name "CATSPERB-201" ; transcript_support_level 1 ; transcript_type protein_coding
CATSPERB--TC2N HAVANA mRNA 4385 35473 . + . FI_gene_label "CATSPERB^ENSG00000133962.8" ; ID "CATSPERB--TC2N^ENST00000256343.8" ; Parent "CATSPERB--TC2N^CATSPERB^ENSG00000133962.8" ; ccdsid "CCDS32142.1" ; exon_id "ENSE00001420708.1" ; exon_number 2 ; gene_id "CATSPERB--TC2N^CATSPERB^ENSG00000133962.8" ; gene_name CATSPERB ; gene_type protein_coding ; havana_gene "OTTHUMG00000171118.3" ; havana_transcript "OTTHUMT00000411769.2" ; hgnc_id "HGNC:20500" ; level 2 ; orig_coord_info "chr14,91729401,91729479,-" ; protein_id "ENSP00000256343.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "CATSPERB--TC2N^ENST00000256343.8" ; transcript_name "CATSPERB-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
CATSPERB--TC2N HAVANA gene 40824 55816 . + . FI_gene_label "TC2N^ENSG00000165929.13" ; ID "CATSPERB--TC2N^TC2N^ENSG00000165929.13" ; ccdsid "CCDS9897.1" ; exon_id "ENSE00001384911.1" ; exon_number 2 ; gene_id "CATSPERB--TC2N^TC2N^ENSG00000165929.13" ; gene_name TC2N ; gene_type protein_coding ; havana_gene "OTTHUMG00000171121.2" ; havana_transcript "OTTHUMT00000411779.1" ; hgnc_id "HGNC:19859" ; level 2 ; orig_coord_info "chr14,91813703,91813769,-" ; protein_id "ENSP00000343199.5" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "CATSPERB--TC2N^ENST00000340892.9" ; transcript_name "TC2N-201" ; transcript_support_level 1 ; transcript_type protein_coding
CATSPERB--TC2N HAVANA mRNA 40824 55816 . + . FI_gene_label "TC2N^ENSG00000165929.13" ; ID "CATSPERB--TC2N^ENST00000340892.9" ; Parent "CATSPERB--TC2N^TC2N^ENSG00000165929.13" ; ccdsid "CCDS9897.1" ; exon_id "ENSE00001384911.1" ; exon_number 2 ; gene_id "CATSPERB--TC2N^TC2N^ENSG00000165929.13" ; gene_name TC2N ; gene_type protein_coding ; havana_gene "OTTHUMG00000171121.2" ; havana_transcript "OTTHUMT00000411779.1" ; hgnc_id "HGNC:19859" ; level 2 ; orig_coord_info "chr14,91813703,91813769,-" ; protein_id "ENSP00000343199.5" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "CATSPERB--TC2N^ENST00000340892.9" ; transcript_name "TC2N-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ETV6--DLG2 HAVANA gene 13392 15151 . + . FI_gene_label "ETV6^ENSG00000139083.11" ; ID "ETV6--DLG2^ETV6^ENSG00000139083.11" ; exon_id "ENSE00002245284.1" ; exon_number 1 ; gene_id "ETV6--DLG2^ETV6^ENSG00000139083.11" ; gene_name ETV6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168538.3" ; havana_transcript "OTTHUMT00000400134.1" ; hgnc_id "HGNC:3495" ; level 2 ; orig_coord_info "chr12,11885937,11886026,+" ; protein_id "ENSP00000266427.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "ETV6--DLG2^ENST00000266427.3" ; transcript_name "ETV6-201" ; transcript_support_level 3 ; transcript_type protein_coding
ETV6--DLG2 HAVANA mRNA 13392 15151 . + . FI_gene_label "ETV6^ENSG00000139083.11" ; ID "ETV6--DLG2^ENST00000266427.3" ; Parent "ETV6--DLG2^ETV6^ENSG00000139083.11" ; exon_id "ENSE00002245284.1" ; exon_number 1 ; gene_id "ETV6--DLG2^ETV6^ENSG00000139083.11" ; gene_name ETV6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168538.3" ; havana_transcript "OTTHUMT00000400134.1" ; hgnc_id "HGNC:3495" ; level 2 ; orig_coord_info "chr12,11885937,11886026,+" ; protein_id "ENSP00000266427.3" ; tag mRNA_start_NF cds_start_NF ; transcript_id "ETV6--DLG2^ENST00000266427.3" ; transcript_name "ETV6-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
ETV6--DLG2 HAVANA gene 40817 83134 . + . FI_gene_label "DLG2^ENSG00000150672.18" ; ID "ETV6--DLG2^DLG2^ENSG00000150672.18" ; ccdsid "CCDS55782.1" ; exon_id "ENSE00001532570.2" ; exon_number 1 ; gene_id "ETV6--DLG2^DLG2^ENSG00000150672.18" ; gene_name DLG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134309.9" ; hgnc_id "HGNC:2901" ; level 2 ; orig_coord_info "chr11,84316825,84317145,-" ; protein_id "ENSP00000280241.8" ; tag basic CCDS ; transcript_id "ETV6--DLG2^ENST00000280241.12" ; transcript_name "DLG2-201" ; transcript_support_level 5 ; transcript_type protein_coding
ETV6--DLG2 HAVANA mRNA 40817 83134 . + . FI_gene_label "DLG2^ENSG00000150672.18" ; ID "ETV6--DLG2^ENST00000280241.12" ; Parent "ETV6--DLG2^DLG2^ENSG00000150672.18" ; ccdsid "CCDS55782.1" ; exon_id "ENSE00001532570.2" ; exon_number 1 ; gene_id "ETV6--DLG2^DLG2^ENSG00000150672.18" ; gene_name DLG2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134309.9" ; hgnc_id "HGNC:2901" ; level 2 ; orig_coord_info "chr11,84316825,84317145,-" ; protein_id "ENSP00000280241.8" ; tag basic CCDS ; transcript_id "ETV6--DLG2^ENST00000280241.12" ; transcript_name "DLG2-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
LLGL2--SEPTIN9 HAVANA gene 1647 23470 . + . FI_gene_label "LLGL2^ENSG00000073350.14" ; ID "LLGL2--SEPTIN9^LLGL2^ENSG00000073350.14" ; ccdsid "CCDS11725.1" ; exon_id "ENSE00001687800.1" ; exon_number 2 ; gene_id "LLGL2--SEPTIN9^LLGL2^ENSG00000073350.14" ; gene_name LLGL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179685.3" ; havana_transcript "OTTHUMT00000447631.1" ; hgnc_id "HGNC:6629" ; level 2 ; orig_coord_info "chr17,75543427,75543501,+" ; protein_id "ENSP00000167462.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "LLGL2--SEPTIN9^ENST00000167462.9" ; transcript_name "LLGL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
LLGL2--SEPTIN9 HAVANA mRNA 1647 23470 . + . FI_gene_label "LLGL2^ENSG00000073350.14" ; ID "LLGL2--SEPTIN9^ENST00000167462.9" ; Parent "LLGL2--SEPTIN9^LLGL2^ENSG00000073350.14" ; ccdsid "CCDS11725.1" ; exon_id "ENSE00001687800.1" ; exon_number 2 ; gene_id "LLGL2--SEPTIN9^LLGL2^ENSG00000073350.14" ; gene_name LLGL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179685.3" ; havana_transcript "OTTHUMT00000447631.1" ; hgnc_id "HGNC:6629" ; level 2 ; orig_coord_info "chr17,75543427,75543501,+" ; protein_id "ENSP00000167462.5" ; tag basic appris_alternative_2 CCDS ; transcript_id "LLGL2--SEPTIN9^ENST00000167462.9" ; transcript_name "LLGL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LLGL2--SEPTIN9 HAVANA gene 33389 69429 . + . FI_gene_label "SEPTIN9^ENSG00000184640.20" ; ID "LLGL2--SEPTIN9^SEPTIN9^ENSG00000184640.20" ; ccdsid "CCDS45791.1" ; exon_id "ENSE00001529426.3" ; exon_number 1 ; gene_id "LLGL2--SEPTIN9^SEPTIN9^ENSG00000184640.20" ; gene_name SEPTIN9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177327.18" ; hgnc_id "HGNC:7323" ; level 2 ; orig_coord_info "chr17,77320327,77320348,+" ; protein_id "ENSP00000329161.8" ; tag basic MANE_Plus_Clinical CCDS ; transcript_id "LLGL2--SEPTIN9^ENST00000329047.13" ; transcript_name "SEPTIN9-201" ; transcript_support_level 1 ; transcript_type protein_coding
LLGL2--SEPTIN9 HAVANA mRNA 33389 69429 . + . FI_gene_label "SEPTIN9^ENSG00000184640.20" ; ID "LLGL2--SEPTIN9^ENST00000329047.13" ; Parent "LLGL2--SEPTIN9^SEPTIN9^ENSG00000184640.20" ; ccdsid "CCDS45791.1" ; exon_id "ENSE00001529426.3" ; exon_number 1 ; gene_id "LLGL2--SEPTIN9^SEPTIN9^ENSG00000184640.20" ; gene_name SEPTIN9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177327.18" ; hgnc_id "HGNC:7323" ; level 2 ; orig_coord_info "chr17,77320327,77320348,+" ; protein_id "ENSP00000329161.8" ; tag basic MANE_Plus_Clinical CCDS ; transcript_id "LLGL2--SEPTIN9^ENST00000329047.13" ; transcript_name "SEPTIN9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPEPPS--AC243829.5 HAVANA gene 2123 32736 . + . FI_gene_label "NPEPPS^ENSG00000141279.17" ; ID "NPEPPS--AC243829.5^NPEPPS^ENSG00000141279.17" ; ccdsid "CCDS45721.1" ; exon_id "ENSE00001138605.6" ; exon_number 1 ; gene_id "NPEPPS--AC243829.5^NPEPPS^ENSG00000141279.17" ; gene_name NPEPPS ; gene_type protein_coding ; havana_gene "OTTHUMG00000165471.7" ; havana_transcript "OTTHUMT00000384269.2" ; hgnc_id "HGNC:7900" ; level 2 ; orig_coord_info "chr17,47531301,47531555,+" ; protein_id "ENSP00000320324.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "NPEPPS--AC243829.5^ENST00000322157.9" ; transcript_name "NPEPPS-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPEPPS--AC243829.5 HAVANA mRNA 2123 32736 . + . FI_gene_label "NPEPPS^ENSG00000141279.17" ; ID "NPEPPS--AC243829.5^ENST00000322157.9" ; Parent "NPEPPS--AC243829.5^NPEPPS^ENSG00000141279.17" ; ccdsid "CCDS45721.1" ; exon_id "ENSE00001138605.6" ; exon_number 1 ; gene_id "NPEPPS--AC243829.5^NPEPPS^ENSG00000141279.17" ; gene_name NPEPPS ; gene_type protein_coding ; havana_gene "OTTHUMG00000165471.7" ; havana_transcript "OTTHUMT00000384269.2" ; hgnc_id "HGNC:7900" ; level 2 ; orig_coord_info "chr17,47531301,47531555,+" ; protein_id "ENSP00000320324.4" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "NPEPPS--AC243829.5^ENST00000322157.9" ; transcript_name "NPEPPS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPHP3--ACAD11 HAVANA gene 34363 56719 . + . FI_gene_label "ACAD11^ENSG00000240303.8" ; ID "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; ccdsid "CCDS3074.1" ; exon_id "ENSE00001878063.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; gene_name ACAD11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159780.6" ; havana_transcript "OTTHUMT00000357279.4" ; hgnc_id "HGNC:30211" ; level 2 ; orig_coord_info "chr3,132659603,132659751,-" ; protein_id "ENSP00000264990.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000264990.11" ; transcript_name "ACAD11-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPHP3--ACAD11 HAVANA mRNA 34363 56719 . + . FI_gene_label "ACAD11^ENSG00000240303.8" ; ID "NPHP3--ACAD11^ENST00000264990.11" ; Parent "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; ccdsid "CCDS3074.1" ; exon_id "ENSE00001878063.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^ACAD11^ENSG00000240303.8" ; gene_name ACAD11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159780.6" ; havana_transcript "OTTHUMT00000357279.4" ; hgnc_id "HGNC:30211" ; level 2 ; orig_coord_info "chr3,132659603,132659751,-" ; protein_id "ENSP00000264990.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000264990.11" ; transcript_name "ACAD11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NPHP3--ACAD11 HAVANA gene 1006 31089 . + . FI_gene_label "NPHP3^ENSG00000113971.20" ; ID "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; ccdsid "CCDS3078.1" ; exon_id "ENSE00001810363.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; gene_name NPHP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159713.4" ; havana_transcript "OTTHUMT00000357020.3" ; hgnc_id "HGNC:7907" ; level 2 ; orig_coord_info "chr3,132721963,132722355,-" ; protein_id "ENSP00000338766.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000337331.10" ; transcript_name "NPHP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
NPHP3--ACAD11 HAVANA mRNA 1006 31089 . + . FI_gene_label "NPHP3^ENSG00000113971.20" ; ID "NPHP3--ACAD11^ENST00000337331.10" ; Parent "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; ccdsid "CCDS3078.1" ; exon_id "ENSE00001810363.2" ; exon_number 1 ; gene_id "NPHP3--ACAD11^NPHP3^ENSG00000113971.20" ; gene_name NPHP3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000159713.4" ; havana_transcript "OTTHUMT00000357020.3" ; hgnc_id "HGNC:7907" ; level 2 ; orig_coord_info "chr3,132721963,132722355,-" ; protein_id "ENSP00000338766.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NPHP3--ACAD11^ENST00000337331.10" ; transcript_name "NPHP3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NSF--LRRC37A HAVANA gene 31204 46341 . + . FI_gene_label "LRRC37A^ENSG00000176681.14" ; ID "NSF--LRRC37A^LRRC37A^ENSG00000176681.14" ; ccdsid "CCDS11504.2" ; exon_id "ENSE00002353704.1" ; exon_number 1 ; gene_id "NSF--LRRC37A^LRRC37A^ENSG00000176681.14" ; gene_name LRRC37A ; gene_type protein_coding ; havana_gene "OTTHUMG00000149841.4" ; havana_transcript "OTTHUMT00000313519.3" ; hgnc_id "HGNC:29069" ; level 2 ; orig_coord_info "chr17,46295134,46297742,+" ; protein_id "ENSP00000326324.5" ; tag basic appris_principal_2 CCDS ; transcript_id "NSF--LRRC37A^ENST00000320254.5" ; transcript_name "LRRC37A-201" ; transcript_support_level 1 ; transcript_type protein_coding
NSF--LRRC37A HAVANA mRNA 31204 46341 . + . FI_gene_label "LRRC37A^ENSG00000176681.14" ; ID "NSF--LRRC37A^ENST00000320254.5" ; Parent "NSF--LRRC37A^LRRC37A^ENSG00000176681.14" ; ccdsid "CCDS11504.2" ; exon_id "ENSE00002353704.1" ; exon_number 1 ; gene_id "NSF--LRRC37A^LRRC37A^ENSG00000176681.14" ; gene_name LRRC37A ; gene_type protein_coding ; havana_gene "OTTHUMG00000149841.4" ; havana_transcript "OTTHUMT00000313519.3" ; hgnc_id "HGNC:29069" ; level 2 ; orig_coord_info "chr17,46295134,46297742,+" ; protein_id "ENSP00000326324.5" ; tag basic appris_principal_2 CCDS ; transcript_id "NSF--LRRC37A^ENST00000320254.5" ; transcript_name "LRRC37A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
NSF--LRRC37A HAVANA gene 1001 25874 . + . FI_gene_label "NSF^ENSG00000073969.18" ; ID "NSF--LRRC37A^NSF^ENSG00000073969.18" ; ccdsid "CCDS42354.1" ; exon_id "ENSE00002645985.1" ; exon_number 1 ; gene_id "NSF--LRRC37A^NSF^ENSG00000073969.18" ; gene_name NSF ; gene_type protein_coding ; havana_gene "OTTHUMG00000134315.6" ; havana_transcript "OTTHUMT00000259348.2" ; hgnc_id "HGNC:8016" ; level 2 ; orig_coord_info "chr17,46590776,46590787,+" ; protein_id "ENSP00000381293.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NSF--LRRC37A^ENST00000398238.8" ; transcript_name "NSF-201" ; transcript_support_level 1 ; transcript_type protein_coding
NSF--LRRC37A HAVANA mRNA 1001 25874 . + . FI_gene_label "NSF^ENSG00000073969.18" ; ID "NSF--LRRC37A^ENST00000398238.8" ; Parent "NSF--LRRC37A^NSF^ENSG00000073969.18" ; ccdsid "CCDS42354.1" ; exon_id "ENSE00002645985.1" ; exon_number 1 ; gene_id "NSF--LRRC37A^NSF^ENSG00000073969.18" ; gene_name NSF ; gene_type protein_coding ; havana_gene "OTTHUMG00000134315.6" ; havana_transcript "OTTHUMT00000259348.2" ; hgnc_id "HGNC:8016" ; level 2 ; orig_coord_info "chr17,46590776,46590787,+" ; protein_id "ENSP00000381293.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "NSF--LRRC37A^ENST00000398238.8" ; transcript_name "NSF-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OLFM2--FBXL20 HAVANA gene 12159 36789 . + . FI_gene_label "FBXL20^ENSG00000108306.13" ; ID "OLFM2--FBXL20^FBXL20^ENSG00000108306.13" ; ccdsid "CCDS32640.1" ; exon_id "ENSE00002727680.2" ; exon_number 1 ; gene_id "OLFM2--FBXL20^FBXL20^ENSG00000108306.13" ; gene_name FBXL20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179002.9" ; havana_transcript "OTTHUMT00000444315.4" ; hgnc_id "HGNC:24679" ; level 2 ; orig_coord_info "chr17,39401361,39401402,-" ; protein_id "ENSP00000264658.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "OLFM2--FBXL20^ENST00000264658.11" ; transcript_name "FBXL20-201" ; transcript_support_level 1 ; transcript_type protein_coding
OLFM2--FBXL20 HAVANA mRNA 12159 36789 . + . FI_gene_label "FBXL20^ENSG00000108306.13" ; ID "OLFM2--FBXL20^ENST00000264658.11" ; Parent "OLFM2--FBXL20^FBXL20^ENSG00000108306.13" ; ccdsid "CCDS32640.1" ; exon_id "ENSE00002727680.2" ; exon_number 1 ; gene_id "OLFM2--FBXL20^FBXL20^ENSG00000108306.13" ; gene_name FBXL20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179002.9" ; havana_transcript "OTTHUMT00000444315.4" ; hgnc_id "HGNC:24679" ; level 2 ; orig_coord_info "chr17,39401361,39401402,-" ; protein_id "ENSP00000264658.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "OLFM2--FBXL20^ENST00000264658.11" ; transcript_name "FBXL20-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
OLFM2--FBXL20 HAVANA gene 1001 8261 . + . FI_gene_label "OLFM2^ENSG00000105088.8" ; ID "OLFM2--FBXL20^OLFM2^ENSG00000105088.8" ; ccdsid "CCDS12221.1" ; exon_id "ENSE00001263159.4" ; exon_number 1 ; gene_id "OLFM2--FBXL20^OLFM2^ENSG00000105088.8" ; gene_name OLFM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180390.2" ; havana_transcript "OTTHUMT00000451119.1" ; hgnc_id "HGNC:17189" ; level 2 ; orig_coord_info "chr19,9936304,9936366,-" ; protein_id "ENSP00000264833.3" ; tag basic appris_principal_1 CCDS ; transcript_id "OLFM2--FBXL20^ENST00000264833.8" ; transcript_name "OLFM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
OLFM2--FBXL20 HAVANA mRNA 1001 8261 . + . FI_gene_label "OLFM2^ENSG00000105088.8" ; ID "OLFM2--FBXL20^ENST00000264833.8" ; Parent "OLFM2--FBXL20^OLFM2^ENSG00000105088.8" ; ccdsid "CCDS12221.1" ; exon_id "ENSE00001263159.4" ; exon_number 1 ; gene_id "OLFM2--FBXL20^OLFM2^ENSG00000105088.8" ; gene_name OLFM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000180390.2" ; havana_transcript "OTTHUMT00000451119.1" ; hgnc_id "HGNC:17189" ; level 2 ; orig_coord_info "chr19,9936304,9936366,-" ; protein_id "ENSP00000264833.3" ; tag basic appris_principal_1 CCDS ; transcript_id "OLFM2--FBXL20^ENST00000264833.8" ; transcript_name "OLFM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 7419 15859 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA11--PCDHA13^ENST00000289272.3" ; Parent "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHA13 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHA13 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHA13^ENST00000616325.1" ; Parent "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHA13^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHA13^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 7419 17434 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA11--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC1 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC1 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC1^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC1^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC1^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 7425 18160 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA11--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA11--PCDHAC2 HAVANA gene 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA11--PCDHAC2 HAVANA mRNA 1001 4418 . + . FI_gene_label "PCDHA11^ENSG00000249158.7" ; ID "PCDHA11--PCDHAC2^ENST00000616325.1" ; Parent "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; ccdsid "CCDS75326.1" ; exon_id "ENSE00003719125.1" ; exon_number 1 ; gene_id "PCDHA11--PCDHAC2^PCDHA11^ENSG00000249158.7" ; gene_name PCDHA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163369.3" ; havana_transcript "OTTHUMT00000477577.1" ; hgnc_id "HGNC:8665" ; level 2 ; orig_coord_info "chr5,140869104,140871533,+" ; protein_id "ENSP00000482503.1" ; tag basic CCDS ; transcript_id "PCDHA11--PCDHAC2^ENST00000616325.1" ; transcript_name "PCDHA11-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 7268 15708 . + . FI_gene_label "PCDHA13^ENSG00000239389.8" ; ID "PCDHA6--PCDHA13^ENST00000289272.3" ; Parent "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; ccdsid "CCDS4240.1" ; exon_id "ENSE00001038419.2" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA13^ENSG00000239389.8" ; gene_name PCDHA13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129614.4" ; havana_transcript "OTTHUMT00000335000.2" ; hgnc_id "HGNC:8667" ; level 2 ; orig_coord_info "chr5,140882269,140884662,+" ; protein_id "ENSP00000289272.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHA13^ENST00000289272.3" ; transcript_name "PCDHA13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHA13 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHA13 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHA13^ENST00000378126.4" ; Parent "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHA13^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHA13^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 7268 17283 . + . FI_gene_label "PCDHAC1^ENSG00000248383.5" ; ID "PCDHA6--PCDHAC1^ENST00000253807.3" ; Parent "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; ccdsid "CCDS4241.1" ; exon_id "ENSE00001085780.5" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHAC1^ENSG00000248383.5" ; gene_name PCDHAC1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129603.3" ; havana_transcript "OTTHUMT00000251798.1" ; hgnc_id "HGNC:8676" ; level 2 ; orig_coord_info "chr5,140926893,140929325,+" ; protein_id "ENSP00000253807.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC1^ENST00000253807.3" ; transcript_name "PCDHAC1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC1 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC1 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC1^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC1^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC1^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 7274 18009 . + . FI_gene_label "PCDHAC2^ENSG00000243232.6" ; ID "PCDHA6--PCDHAC2^ENST00000289269.7" ; Parent "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; ccdsid "CCDS4242.1" ; exon_id "ENSE00001038414.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHAC2^ENSG00000243232.6" ; gene_name PCDHAC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129607.7" ; havana_transcript "OTTHUMT00000251802.4" ; hgnc_id "HGNC:8677" ; level 2 ; orig_coord_info "chr5,140966767,140969331,+" ; protein_id "ENSP00000289269.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHA6--PCDHAC2^ENST00000289269.7" ; transcript_name "PCDHAC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHA6--PCDHAC2 HAVANA gene 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHA6--PCDHAC2 HAVANA mRNA 1001 4267 . + . FI_gene_label "PCDHA6^ENSG00000081842.18" ; ID "PCDHA6--PCDHAC2^ENST00000378126.4" ; Parent "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; exon_id "ENSE00001476364.4" ; exon_number 1 ; gene_id "PCDHA6--PCDHAC2^PCDHA6^ENSG00000081842.18" ; gene_name PCDHA6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163353.5" ; havana_transcript "OTTHUMT00000477550.1" ; hgnc_id "HGNC:8672" ; level 2 ; orig_coord_info "chr5,140828092,140830500,+" ; protein_id "ENSP00000367366.4" ; tag upstream_ATG RNA_Seq_supported_partial basic ; transcript_id "PCDHA6--PCDHAC2^ENST00000378126.4" ; transcript_name "PCDHA6-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 6778 16231 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGB2--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA10 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA10 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA10^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA10^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA10^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 6593 15398 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGB2--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA11 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA11 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA11^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA11^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA11^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 6589 14481 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGB2--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA12 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA12 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA12^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA12^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA12^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 9065 18245 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGB2--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA8 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA8 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA8^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA8^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA8^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 6610 14337 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGB2--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGA9 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGA9 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGA9^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGA9^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGA9^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 6771 16370 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGB2--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB6 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB6 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB6^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB6^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB6^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 6621 14550 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGB2--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGB7 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGB7 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGB7^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGB7^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGB7^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 6608 16794 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGB2--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC3 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC3 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC3^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC3^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC3^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 6766 14562 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGB2--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC4 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC4 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC4^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC4^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC4^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 6589 14614 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGB2--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGB2--PCDHGC5 HAVANA gene 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGB2--PCDHGC5 HAVANA mRNA 1001 3588 . + . FI_gene_label "PCDHGB2^ENSG00000253910.2" ; ID "PCDHGB2--PCDHGC5^ENST00000622527.1" ; Parent "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; ccdsid "CCDS75332.1" ; exon_id "ENSE00003749890.1" ; exon_number 1 ; gene_id "PCDHGB2--PCDHGC5^PCDHGB2^ENSG00000253910.2" ; gene_name PCDHGB2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163682.2" ; havana_transcript "OTTHUMT00000476685.1" ; hgnc_id "HGNC:8709" ; level 2 ; orig_coord_info "chr5,141360136,141362568,+" ; protein_id "ENSP00000481512.1" ; tag basic CCDS ; transcript_id "PCDHGB2--PCDHGC5^ENST00000622527.1" ; transcript_name "PCDHGB2-202" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
SEC31A--ATXN1 HAVANA gene 42530 77965 . + . FI_gene_label "ATXN1^ENSG00000124788.19" ; ID "SEC31A--ATXN1^ATXN1^ENSG00000124788.19" ; ccdsid "CCDS34342.1" ; exon_id "ENSE00000848097.1" ; exon_number 8 ; gene_id "SEC31A--ATXN1^ATXN1^ENSG00000124788.19" ; gene_name ATXN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014303.5" ; havana_transcript "OTTHUMT00000039943.3" ; hgnc_id "HGNC:10548" ; level 2 ; orig_coord_info "chr6,16326394,16328310,-" ; protein_id "ENSP00000244769.3" ; tag basic appris_principal_1 CCDS ; transcript_id "SEC31A--ATXN1^ENST00000244769.8" ; transcript_name "ATXN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
SEC31A--ATXN1 HAVANA mRNA 42530 77965 . + . FI_gene_label "ATXN1^ENSG00000124788.19" ; ID "SEC31A--ATXN1^ENST00000244769.8" ; Parent "SEC31A--ATXN1^ATXN1^ENSG00000124788.19" ; ccdsid "CCDS34342.1" ; exon_id "ENSE00000848097.1" ; exon_number 8 ; gene_id "SEC31A--ATXN1^ATXN1^ENSG00000124788.19" ; gene_name ATXN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000014303.5" ; havana_transcript "OTTHUMT00000039943.3" ; hgnc_id "HGNC:10548" ; level 2 ; orig_coord_info "chr6,16326394,16328310,-" ; protein_id "ENSP00000244769.3" ; tag basic appris_principal_1 CCDS ; transcript_id "SEC31A--ATXN1^ENST00000244769.8" ; transcript_name "ATXN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SEC31A--ATXN1 HAVANA gene 13187 38981 . + . FI_gene_label "SEC31A^ENSG00000138674.17" ; ID "SEC31A--ATXN1^SEC31A^ENSG00000138674.17" ; exon_id "ENSE00001485295.3" ; exon_number 1 ; gene_id "SEC31A--ATXN1^SEC31A^ENSG00000138674.17" ; gene_name SEC31A ; gene_type protein_coding ; havana_gene "OTTHUMG00000130297.12" ; havana_transcript "OTTHUMT00000361950.1" ; hgnc_id "HGNC:17052" ; level 2 ; orig_coord_info "chr4,82871368,82871465,-" ; protein_id "ENSP00000264405.5" ; tag basic ; transcript_id "SEC31A--ATXN1^ENST00000264405.9" ; transcript_name "SEC31A-201" ; transcript_support_level 2 ; transcript_type protein_coding
SEC31A--ATXN1 HAVANA mRNA 13187 38981 . + . FI_gene_label "SEC31A^ENSG00000138674.17" ; ID "SEC31A--ATXN1^ENST00000264405.9" ; Parent "SEC31A--ATXN1^SEC31A^ENSG00000138674.17" ; exon_id "ENSE00001485295.3" ; exon_number 1 ; gene_id "SEC31A--ATXN1^SEC31A^ENSG00000138674.17" ; gene_name SEC31A ; gene_type protein_coding ; havana_gene "OTTHUMG00000130297.12" ; havana_transcript "OTTHUMT00000361950.1" ; hgnc_id "HGNC:17052" ; level 2 ; orig_coord_info "chr4,82871368,82871465,-" ; protein_id "ENSP00000264405.5" ; tag basic ; transcript_id "SEC31A--ATXN1^ENST00000264405.9" ; transcript_name "SEC31A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SMURF2P1--LRRC37B HAVANA gene 12005 29164 . + . FI_gene_label "LRRC37B^ENSG00000185158.12" ; ID "SMURF2P1--LRRC37B^LRRC37B^ENSG00000185158.12" ; exon_id "ENSE00001894889.2" ; exon_number 1 ; gene_id "SMURF2P1--LRRC37B^LRRC37B^ENSG00000185158.12" ; gene_name LRRC37B ; gene_type protein_coding ; havana_gene "OTTHUMG00000132785.3" ; havana_transcript "OTTHUMT00000256193.2" ; hgnc_id "HGNC:29070" ; level 2 ; orig_coord_info "chr17,32021066,32022825,+" ; protein_id "ENSP00000332536.7" ; tag basic appris_alternative_2 ; transcript_id "SMURF2P1--LRRC37B^ENST00000327564.11" ; transcript_name "LRRC37B-201" ; transcript_support_level 1 ; transcript_type protein_coding
SMURF2P1--LRRC37B HAVANA mRNA 12005 29164 . + . FI_gene_label "LRRC37B^ENSG00000185158.12" ; ID "SMURF2P1--LRRC37B^ENST00000327564.11" ; Parent "SMURF2P1--LRRC37B^LRRC37B^ENSG00000185158.12" ; exon_id "ENSE00001894889.2" ; exon_number 1 ; gene_id "SMURF2P1--LRRC37B^LRRC37B^ENSG00000185158.12" ; gene_name LRRC37B ; gene_type protein_coding ; havana_gene "OTTHUMG00000132785.3" ; havana_transcript "OTTHUMT00000256193.2" ; hgnc_id "HGNC:29070" ; level 2 ; orig_coord_info "chr17,32021066,32022825,+" ; protein_id "ENSP00000332536.7" ; tag basic appris_alternative_2 ; transcript_id "SMURF2P1--LRRC37B^ENST00000327564.11" ; transcript_name "LRRC37B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNU13--LLPH HAVANA gene 4331 9276 . + . FI_gene_label "SNU13^ENSG00000100138.15" ; ID "SNU13--LLPH^SNU13^ENSG00000100138.15" ; ccdsid "CCDS14022.1" ; exon_id "ENSE00001388935.4" ; exon_number 1 ; gene_id "SNU13--LLPH^SNU13^ENSG00000100138.15" ; gene_name SNU13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151189.9" ; havana_transcript "OTTHUMT00000321683.2" ; hgnc_id "HGNC:7819" ; level 2 ; orig_coord_info "chr22,41682356,41682358,-" ; protein_id "ENSP00000215956.5" ; tag basic appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000215956.10" ; transcript_name "SNU13-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNU13--LLPH HAVANA mRNA 4331 9276 . + . FI_gene_label "SNU13^ENSG00000100138.15" ; ID "SNU13--LLPH^ENST00000215956.10" ; Parent "SNU13--LLPH^SNU13^ENSG00000100138.15" ; ccdsid "CCDS14022.1" ; exon_id "ENSE00001388935.4" ; exon_number 1 ; gene_id "SNU13--LLPH^SNU13^ENSG00000100138.15" ; gene_name SNU13 ; gene_type protein_coding ; havana_gene "OTTHUMG00000151189.9" ; havana_transcript "OTTHUMT00000321683.2" ; hgnc_id "HGNC:7819" ; level 2 ; orig_coord_info "chr22,41682356,41682358,-" ; protein_id "ENSP00000215956.5" ; tag basic appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000215956.10" ; transcript_name "SNU13-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SNU13--LLPH HAVANA gene 13051 23027 . + . FI_gene_label "LLPH^ENSG00000139233.7" ; ID "SNU13--LLPH^LLPH^ENSG00000139233.7" ; ccdsid "CCDS8974.1" ; exon_id "ENSE00003592110.1" ; exon_number 2 ; gene_id "SNU13--LLPH^LLPH^ENSG00000139233.7" ; gene_name LLPH ; gene_type protein_coding ; havana_gene "OTTHUMG00000168959.4" ; havana_transcript "OTTHUMT00000401752.4" ; hgnc_id "HGNC:28229" ; level 2 ; orig_coord_info "chr12,66128896,66129106,-" ; protein_id "ENSP00000266604.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000266604.7" ; transcript_name "LLPH-201" ; transcript_support_level 1 ; transcript_type protein_coding
SNU13--LLPH HAVANA mRNA 13051 23027 . + . FI_gene_label "LLPH^ENSG00000139233.7" ; ID "SNU13--LLPH^ENST00000266604.7" ; Parent "SNU13--LLPH^LLPH^ENSG00000139233.7" ; ccdsid "CCDS8974.1" ; exon_id "ENSE00003592110.1" ; exon_number 2 ; gene_id "SNU13--LLPH^LLPH^ENSG00000139233.7" ; gene_name LLPH ; gene_type protein_coding ; havana_gene "OTTHUMG00000168959.4" ; havana_transcript "OTTHUMT00000401752.4" ; hgnc_id "HGNC:28229" ; level 2 ; orig_coord_info "chr12,66128896,66129106,-" ; protein_id "ENSP00000266604.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SNU13--LLPH^ENST00000266604.7" ; transcript_name "LLPH-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SPIDR--AC091096.1 HAVANA gene 1061 36568 . + . FI_gene_label "SPIDR^ENSG00000164808.17" ; ID "SPIDR--AC091096.1^SPIDR^ENSG00000164808.17" ; ccdsid "CCDS43737.1" ; exon_id "ENSE00002119316.2" ; exon_number 1 ; gene_id "SPIDR--AC091096.1^SPIDR^ENSG00000164808.17" ; gene_name SPIDR ; gene_type protein_coding ; havana_gene "OTTHUMG00000164176.7" ; havana_transcript "OTTHUMT00000377611.2" ; hgnc_id "HGNC:28971" ; level 2 ; orig_coord_info "chr8,47260959,47260991,+" ; protein_id "ENSP00000297423.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SPIDR--AC091096.1^ENST00000297423.9" ; transcript_name "SPIDR-201" ; transcript_support_level 1 ; transcript_type protein_coding
SPIDR--AC091096.1 HAVANA mRNA 1061 36568 . + . FI_gene_label "SPIDR^ENSG00000164808.17" ; ID "SPIDR--AC091096.1^ENST00000297423.9" ; Parent "SPIDR--AC091096.1^SPIDR^ENSG00000164808.17" ; ccdsid "CCDS43737.1" ; exon_id "ENSE00002119316.2" ; exon_number 1 ; gene_id "SPIDR--AC091096.1^SPIDR^ENSG00000164808.17" ; gene_name SPIDR ; gene_type protein_coding ; havana_gene "OTTHUMG00000164176.7" ; havana_transcript "OTTHUMT00000377611.2" ; hgnc_id "HGNC:28971" ; level 2 ; orig_coord_info "chr8,47260959,47260991,+" ; protein_id "ENSP00000297423.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SPIDR--AC091096.1^ENST00000297423.9" ; transcript_name "SPIDR-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AC240565.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AC240565.1^ENST00000326270.13" ; Parent "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AC240565.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AC240565.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 11056 15867 . + . FI_gene_label "TICAM2^ENSG00000243414.6" ; ID "TMED7--TICAM2^ENST00000427199.3" ; Parent "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; ccdsid "CCDS4119.1" ; exon_id "ENSE00001741902.2" ; exon_number 2 ; gene_id "TMED7--TICAM2^TICAM2^ENSG00000243414.6" ; gene_name TICAM2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162905.2" ; havana_transcript "OTTHUMT00000338755.1" ; hgnc_id "HGNC:21354" ; level 2 ; orig_coord_info "chr5,115580552,115581256,-" ; protein_id "ENSP00000415139.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000427199.3" ; transcript_name "TICAM2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TMED7--TICAM2 HAVANA gene 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
TMED7--TICAM2 HAVANA mRNA 2138 8055 . + . FI_gene_label "TMED7^ENSG00000134970.14" ; ID "TMED7--TICAM2^ENST00000456936.4" ; Parent "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; ccdsid "CCDS4120.1" ; exon_id "ENSE00002252373.2" ; exon_number 1 ; gene_id "TMED7--TICAM2^TMED7^ENSG00000134970.14" ; gene_name TMED7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132013.8" ; havana_transcript "OTTHUMT00000254990.5" ; hgnc_id "HGNC:24253" ; level 2 ; orig_coord_info "chr5,115625601,115625792,-" ; protein_id "ENSP00000405926.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TMED7--TICAM2^ENST00000456936.4" ; transcript_name "TMED7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZEB1--GRB7 HAVANA gene 30158 38435 . + . FI_gene_label "GRB7^ENSG00000141738.14" ; ID "ZEB1--GRB7^GRB7^ENSG00000141738.14" ; ccdsid "CCDS11345.1" ; exon_id "ENSE00003687545.1" ; exon_number 2 ; gene_id "ZEB1--GRB7^GRB7^ENSG00000141738.14" ; gene_name GRB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133253.6" ; havana_transcript "OTTHUMT00000257024.3" ; hgnc_id "HGNC:4567" ; level 2 ; orig_coord_info "chr17,39742302,39742456,+" ; protein_id "ENSP00000310771.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZEB1--GRB7^ENST00000309156.9" ; transcript_name "GRB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZEB1--GRB7 HAVANA mRNA 30158 38435 . + . FI_gene_label "GRB7^ENSG00000141738.14" ; ID "ZEB1--GRB7^ENST00000309156.9" ; Parent "ZEB1--GRB7^GRB7^ENSG00000141738.14" ; ccdsid "CCDS11345.1" ; exon_id "ENSE00003687545.1" ; exon_number 2 ; gene_id "ZEB1--GRB7^GRB7^ENSG00000141738.14" ; gene_name GRB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133253.6" ; havana_transcript "OTTHUMT00000257024.3" ; hgnc_id "HGNC:4567" ; level 2 ; orig_coord_info "chr17,39742302,39742456,+" ; protein_id "ENSP00000310771.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZEB1--GRB7^ENST00000309156.9" ; transcript_name "GRB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZEB1--GRB7 HAVANA gene 1631 26534 . + . FI_gene_label "ZEB1^ENSG00000148516.22" ; ID "ZEB1--GRB7^ZEB1^ENSG00000148516.22" ; ccdsid "CCDS7169.1" ; exon_id "ENSE00002545488.1" ; exon_number 1 ; gene_id "ZEB1--GRB7^ZEB1^ENSG00000148516.22" ; gene_name ZEB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017907.5" ; havana_transcript "OTTHUMT00000419083.2" ; hgnc_id "HGNC:11642" ; level 2 ; orig_coord_info "chr10,31319235,31319292,+" ; protein_id "ENSP00000319248.9" ; tag basic appris_principal_4 CCDS ; transcript_id "ZEB1--GRB7^ENST00000320985.14" ; transcript_name "ZEB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZEB1--GRB7 HAVANA mRNA 1631 26534 . + . FI_gene_label "ZEB1^ENSG00000148516.22" ; ID "ZEB1--GRB7^ENST00000320985.14" ; Parent "ZEB1--GRB7^ZEB1^ENSG00000148516.22" ; ccdsid "CCDS7169.1" ; exon_id "ENSE00002545488.1" ; exon_number 1 ; gene_id "ZEB1--GRB7^ZEB1^ENSG00000148516.22" ; gene_name ZEB1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017907.5" ; havana_transcript "OTTHUMT00000419083.2" ; hgnc_id "HGNC:11642" ; level 2 ; orig_coord_info "chr10,31319235,31319292,+" ; protein_id "ENSP00000319248.9" ; tag basic appris_principal_4 CCDS ; transcript_id "ZEB1--GRB7^ENST00000320985.14" ; transcript_name "ZEB1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
AC015911.9--SLFN12L HAVANA RNA 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^ENST00000650652.2" ; Parent "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC015911.9--SLFN12L ENSEMBL gene 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
AC015911.9--SLFN12L ENSEMBL RNA 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^ENST00000675965.1" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
L1 and L2 created:
AC092821.3--CLEC2D HAVANA gene 10171 14579 . + . FI_gene_label "AC092821.3^ENSG00000284634.1" ; ID "AC092821.3--CLEC2D^AC092821.3^ENSG00000284634.1" ; exon_id "ENSE00002679132.1" ; exon_number 1 ; gene_id "AC092821.3--CLEC2D^AC092821.3^ENSG00000284634.1" ; gene_name "AC092821.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164997.5" ; havana_transcript "OTTHUMT00000439143.1" ; level 2 ; orig_coord_info "chr12,9634592,9634696,+" ; tag basic ; transcript_id "AC092821.3--CLEC2D^ENST00000576948.5" ; transcript_name "AC092821.3-206" ; transcript_support_level 3 ; transcript_type lncRNA
AC092821.3--CLEC2D HAVANA RNA 10171 14579 . + . FI_gene_label "AC092821.3^ENSG00000284634.1" ; ID "AC092821.3--CLEC2D^ENST00000576948.5" ; Parent "AC092821.3--CLEC2D^AC092821.3^ENSG00000284634.1" ; exon_id "ENSE00002679132.1" ; exon_number 1 ; gene_id "AC092821.3--CLEC2D^AC092821.3^ENSG00000284634.1" ; gene_name "AC092821.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164997.5" ; havana_transcript "OTTHUMT00000439143.1" ; level 2 ; orig_coord_info "chr12,9634592,9634696,+" ; tag basic ; transcript_id "AC092821.3--CLEC2D^ENST00000576948.5" ; transcript_name "AC092821.3-206" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
AC096582.2--SEPTIN14 HAVANA gene 1001 1516 . + . FI_gene_label "AC096582.2^ENSG00000251378.1" ; ID "AC096582.2--SEPTIN14^AC096582.2^ENSG00000251378.1" ; exon_id "ENSE00002021976.1" ; exon_number 1 ; gene_id "AC096582.2--SEPTIN14^AC096582.2^ENSG00000251378.1" ; gene_name "AC096582.2" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000155417.1" ; havana_transcript "OTTHUMT00000340034.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,45818582,45819097,+" ; tag basic ; transcript_id "AC096582.2--SEPTIN14^ENST00000510860.1" ; transcript_name "AC096582.2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
AC096582.2--SEPTIN14 HAVANA RNA 1001 1516 . + . FI_gene_label "AC096582.2^ENSG00000251378.1" ; ID "AC096582.2--SEPTIN14^ENST00000510860.1" ; Parent "AC096582.2--SEPTIN14^AC096582.2^ENSG00000251378.1" ; exon_id "ENSE00002021976.1" ; exon_number 1 ; gene_id "AC096582.2--SEPTIN14^AC096582.2^ENSG00000251378.1" ; gene_name "AC096582.2" ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000155417.1" ; havana_transcript "OTTHUMT00000340034.1" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,45818582,45819097,+" ; tag basic ; transcript_id "AC096582.2--SEPTIN14^ENST00000510860.1" ; transcript_name "AC096582.2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
BMS1P7--AGAP14P HAVANA gene 1001 7575 . + . FI_gene_label "BMS1P7^ENSG00000270025.2" ; ID "BMS1P7--AGAP14P^BMS1P7^ENSG00000270025.2" ; exon_id "ENSE00001675840.2" ; exon_number 1 ; gene_id "BMS1P7--AGAP14P^BMS1P7^ENSG00000270025.2" ; gene_name BMS1P7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018163.3" ; havana_transcript "OTTHUMT00000047911.2" ; hgnc_id "HGNC:23655" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48059827,48060016,-" ; tag basic ; transcript_id "BMS1P7--AGAP14P^ENST00000602440.2" ; transcript_name "BMS1P7-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
BMS1P7--AGAP14P HAVANA RNA 1001 7575 . + . FI_gene_label "BMS1P7^ENSG00000270025.2" ; ID "BMS1P7--AGAP14P^ENST00000602440.2" ; Parent "BMS1P7--AGAP14P^BMS1P7^ENSG00000270025.2" ; exon_id "ENSE00001675840.2" ; exon_number 1 ; gene_id "BMS1P7--AGAP14P^BMS1P7^ENSG00000270025.2" ; gene_name BMS1P7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018163.3" ; havana_transcript "OTTHUMT00000047911.2" ; hgnc_id "HGNC:23655" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48059827,48060016,-" ; tag basic ; transcript_id "BMS1P7--AGAP14P^ENST00000602440.2" ; transcript_name "BMS1P7-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
BMS1P7--AGAP14P HAVANA gene 10576 18649 . + . FI_gene_label "AGAP14P^ENSG00000279058.2" ; ID "BMS1P7--AGAP14P^AGAP14P^ENSG00000279058.2" ; exon_id "ENSE00003760240.1" ; exon_number 1 ; gene_id "BMS1P7--AGAP14P^AGAP14P^ENSG00000279058.2" ; gene_name AGAP14P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000192004.1" ; havana_transcript "OTTHUMT00000491977.1" ; hgnc_id "HGNC:23660" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr10,46337224,46337446,+" ; tag basic ; transcript_id "BMS1P7--AGAP14P^ENST00000624701.2" ; transcript_name "AGAP14P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
BMS1P7--AGAP14P HAVANA RNA 10576 18649 . + . FI_gene_label "AGAP14P^ENSG00000279058.2" ; ID "BMS1P7--AGAP14P^ENST00000624701.2" ; Parent "BMS1P7--AGAP14P^AGAP14P^ENSG00000279058.2" ; exon_id "ENSE00003760240.1" ; exon_number 1 ; gene_id "BMS1P7--AGAP14P^AGAP14P^ENSG00000279058.2" ; gene_name AGAP14P ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000192004.1" ; havana_transcript "OTTHUMT00000491977.1" ; hgnc_id "HGNC:23660" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr10,46337224,46337446,+" ; tag basic ; transcript_id "BMS1P7--AGAP14P^ENST00000624701.2" ; transcript_name "AGAP14P-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
C8orf88--AC016868.1 HAVANA gene 10042 11967 . + . FI_gene_label "AC016868.1^ENSG00000253396.1" ; ID "C8orf88--AC016868.1^AC016868.1^ENSG00000253396.1" ; exon_id "ENSE00002096081.1" ; exon_number 1 ; gene_id "C8orf88--AC016868.1^AC016868.1^ENSG00000253396.1" ; gene_name "AC016868.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164076.1" ; havana_transcript "OTTHUMT00000377136.1" ; level 2 ; orig_coord_info "chr8,41435298,41435640,+" ; tag basic ; transcript_id "C8orf88--AC016868.1^ENST00000521725.1" ; transcript_name "AC016868.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
C8orf88--AC016868.1 HAVANA RNA 10042 11967 . + . FI_gene_label "AC016868.1^ENSG00000253396.1" ; ID "C8orf88--AC016868.1^ENST00000521725.1" ; Parent "C8orf88--AC016868.1^AC016868.1^ENSG00000253396.1" ; exon_id "ENSE00002096081.1" ; exon_number 1 ; gene_id "C8orf88--AC016868.1^AC016868.1^ENSG00000253396.1" ; gene_name "AC016868.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164076.1" ; havana_transcript "OTTHUMT00000377136.1" ; level 2 ; orig_coord_info "chr8,41435298,41435640,+" ; tag basic ; transcript_id "C8orf88--AC016868.1^ENST00000521725.1" ; transcript_name "AC016868.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
NPEPPS--AC243829.5 HAVANA gene 37126 38372 . + . FI_gene_label "AC243829.5^ENSG00000278097.1" ; ID "NPEPPS--AC243829.5^AC243829.5^ENSG00000278097.1" ; exon_id "ENSE00002266549.2" ; exon_number 1 ; gene_id "NPEPPS--AC243829.5^AC243829.5^ENSG00000278097.1" ; gene_name "AC243829.5" ; gene_type lncRNA ; havana_gene "OTTHUMG00000188421.1" ; havana_transcript "OTTHUMT00000477171.1" ; level 2 ; orig_coord_info "chr17,36226685,36226807,-" ; tag basic ; transcript_id "NPEPPS--AC243829.5^ENST00000578447.2" ; transcript_name "AC243829.5-201" ; transcript_support_level 5 ; transcript_type lncRNA
NPEPPS--AC243829.5 HAVANA RNA 37126 38372 . + . FI_gene_label "AC243829.5^ENSG00000278097.1" ; ID "NPEPPS--AC243829.5^ENST00000578447.2" ; Parent "NPEPPS--AC243829.5^AC243829.5^ENSG00000278097.1" ; exon_id "ENSE00002266549.2" ; exon_number 1 ; gene_id "NPEPPS--AC243829.5^AC243829.5^ENSG00000278097.1" ; gene_name "AC243829.5" ; gene_type lncRNA ; havana_gene "OTTHUMG00000188421.1" ; havana_transcript "OTTHUMT00000477171.1" ; level 2 ; orig_coord_info "chr17,36226685,36226807,-" ; tag basic ; transcript_id "NPEPPS--AC243829.5^ENST00000578447.2" ; transcript_name "AC243829.5-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
SMURF2P1--LRRC37B HAVANA gene 1070 5305 . + . FI_gene_label "SMURF2P1^ENSG00000248121.8" ; ID "SMURF2P1--LRRC37B^SMURF2P1^ENSG00000248121.8" ; exon_id "ENSE00002054081.1" ; exon_number 1 ; gene_id "SMURF2P1--LRRC37B^SMURF2P1^ENSG00000248121.8" ; gene_name SMURF2P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000132798.3" ; havana_transcript "OTTHUMT00000256215.2" ; hgnc_id "HGNC:44402" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,30600865,30600916,+" ; tag basic ; transcript_id "SMURF2P1--LRRC37B^ENST00000514992.2" ; transcript_name "SMURF2P1-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
SMURF2P1--LRRC37B HAVANA RNA 1070 5305 . + . FI_gene_label "SMURF2P1^ENSG00000248121.8" ; ID "SMURF2P1--LRRC37B^ENST00000514992.2" ; Parent "SMURF2P1--LRRC37B^SMURF2P1^ENSG00000248121.8" ; exon_id "ENSE00002054081.1" ; exon_number 1 ; gene_id "SMURF2P1--LRRC37B^SMURF2P1^ENSG00000248121.8" ; gene_name SMURF2P1 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000132798.3" ; havana_transcript "OTTHUMT00000256215.2" ; hgnc_id "HGNC:44402" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,30600865,30600916,+" ; tag basic ; transcript_id "SMURF2P1--LRRC37B^ENST00000514992.2" ; transcript_name "SMURF2P1-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
SPIDR--AC091096.1 HAVANA gene 39569 45547 . + . FI_gene_label "AC091096.1^ENSG00000253634.3" ; ID "SPIDR--AC091096.1^AC091096.1^ENSG00000253634.3" ; exon_id "ENSE00002135651.2" ; exon_number 1 ; gene_id "SPIDR--AC091096.1^AC091096.1^ENSG00000253634.3" ; gene_name "AC091096.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164157.5" ; havana_transcript "OTTHUMT00000377512.2" ; level 2 ; orig_coord_info "chr8,92655443,92655576,-" ; tag TAGENE ; transcript_id "SPIDR--AC091096.1^ENST00000523284.2" ; transcript_name "AC091096.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
SPIDR--AC091096.1 HAVANA RNA 39569 45547 . + . FI_gene_label "AC091096.1^ENSG00000253634.3" ; ID "SPIDR--AC091096.1^ENST00000523284.2" ; Parent "SPIDR--AC091096.1^AC091096.1^ENSG00000253634.3" ; exon_id "ENSE00002135651.2" ; exon_number 1 ; gene_id "SPIDR--AC091096.1^AC091096.1^ENSG00000253634.3" ; gene_name "AC091096.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000164157.5" ; havana_transcript "OTTHUMT00000377512.2" ; level 2 ; orig_coord_info "chr8,92655443,92655576,-" ; tag TAGENE ; transcript_id "SPIDR--AC091096.1^ENST00000523284.2" ; transcript_name "AC091096.1-202" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
TLK2--AC240565.1 HAVANA gene 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
TLK2--AC240565.1 HAVANA RNA 40046 48301 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "TLK2--AC240565.1^ENST00000624936.2" ; Parent "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "TLK2--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "TLK2--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
543 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 1 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1039 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 42 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed