Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/d99a059f1f2bb3982782eef04cdfdd/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/bfdc713ff5ad6aaa77d3db51a6e8d5/659_b6o-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/d99a059f1f2bb3982782eef04cdfdd/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/985f63add28276a170970e1e3ce463/659_b6o-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

reading reference bed file:  ref_annot.bed  ...  Done! Total 386135 known splicing junctions.
Load BAM file ...  Done
shuffling alignments ... Done
sampling 5% (6) splicing reads. 5 splicing junctions. 3 known splicing junctions. 2 novel splicing junctions.
sampling 10% (13) splicing reads. 8 splicing junctions. 4 known splicing junctions. 4 novel splicing junctions.
sampling 15% (20) splicing reads. 9 splicing junctions. 4 known splicing junctions. 5 novel splicing junctions.
sampling 20% (27) splicing reads. 9 splicing junctions. 4 known splicing junctions. 5 novel splicing junctions.
sampling 25% (34) splicing reads. 9 splicing junctions. 4 known splicing junctions. 5 novel splicing junctions.
sampling 30% (41) splicing reads. 9 splicing junctions. 4 known splicing junctions. 5 novel splicing junctions.
sampling 35% (48) splicing reads. 11 splicing junctions. 4 known splicing junctions. 7 novel splicing junctions.
sampling 40% (55) splicing reads. 11 splicing junctions. 4 known splicing junctions. 7 novel splicing junctions.
sampling 45% (62) splicing reads. 11 splicing junctions. 4 known splicing junctions. 7 novel splicing junctions.
sampling 50% (69) splicing reads. 13 splicing junctions. 5 known splicing junctions. 8 novel splicing junctions.
sampling 55% (76) splicing reads. 13 splicing junctions. 5 known splicing junctions. 8 novel splicing junctions.
sampling 60% (83) splicing reads. 13 splicing junctions. 5 known splicing junctions. 8 novel splicing junctions.
sampling 65% (90) splicing reads. 13 splicing junctions. 5 known splicing junctions. 8 novel splicing junctions.
sampling 70% (97) splicing reads. 13 splicing junctions. 5 known splicing junctions. 8 novel splicing junctions.
sampling 75% (104) splicing reads. 13 splicing junctions. 5 known splicing junctions. 8 novel splicing junctions.
sampling 80% (111) splicing reads. 14 splicing junctions. 5 known splicing junctions. 9 novel splicing junctions.
sampling 85% (118) splicing reads. 16 splicing junctions. 5 known splicing junctions. 11 novel splicing junctions.
sampling 90% (125) splicing reads. 16 splicing junctions. 5 known splicing junctions. 11 novel splicing junctions.
sampling 95% (132) splicing reads. 16 splicing junctions. 5 known splicing junctions. 11 novel splicing junctions.
sampling 100% (139) splicing reads. 16 splicing junctions. 5 known splicing junctions. 11 novel splicing junctions.
null device 
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