Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/0aac9e52a6bb3d1d77391e6817159d/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/0aac9e52a6bb3d1d77391e6817159d/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b9/20a07bcc13f21b385fe6bb1816fd62/659_1q-T1-TRNA-1_B23MHV2LT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/b8a0171ffdce977d3cb407840441f6/659_1q-T1-TRNA-1_B23MHV2LT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 659_1q-T1-TRNA-1_B23MHV2LT4_1/abundance.h5
Successfully converted 659_1q-T1-TRNA-1_B23MHV2LT4_1/abundance.h5 to 659_1q-T1-TRNA-1_B23MHV2LT4_1_kallisto_mqc.tsv
  Sample: 659_1q-T1-TRNA-1_B23MHV2LT4_1
  Mean Fragment Length: 130.8 bp
  Median Fragment Length: 118.0 bp
  pct_mito_est_counts: 0.027%
  pct_ribo_est_counts: 1.229%
  pct_hk_est_counts: 0.812%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.061%
  pct_ribo_tpm: 3.496%
  pct_hk_tpm: 1.086%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.004%