Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/691b4884a036a6d56eb8ffa099ca16/659_mK-T1-TRNA-2_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/c55f6452c77627651069d9961e014c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/da/c55f6452c77627651069d9961e014c/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory