Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/agat_config.yaml file
------------------------------------------------------------------------------
| Another GFF Analysis Toolkit (AGAT) - Version: v1.2.0 |
| https://github.com/NBISweden/AGAT |
| National Bioinformatics Infrastructure Sweden (NBIS) - www.nbis.se |
------------------------------------------------------------------------------
------ Start parsing ------
-------------------------- parse options and metadata --------------------------
=> Accessing the feature_levels YAML file
Using standard /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/feature_levels.yaml file
=> Attribute used to group features when no Parent/ID relationship exists (i.e common tag):
* locus_tag
* gene_id
=> merge_loci option deactivated
=> Machine information:
This script is being run by perl v5.32.1
Bioperl location being used: /usr/local/lib/perl5/site_perl/Bio/
Operating system being used: linux
=> Accessing Ontology
No ontology accessible from the gff file header!
We use the SOFA ontology distributed with AGAT:
/usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo
Read ontology /usr/local/lib/perl5/site_perl/auto/share/dist/AGAT/so.obo:
4 root terms, and 2596 total terms, and 1516 leaf terms
Filtering ontology:
We found 1861 terms that are sequence_feature or is_a child of it.
--------------------------------- parsing file ---------------------------------
=> Number of line in file: 12610
=> Number of comment lines: 0
=> Fasta included: No
=> Number of features lines: 12610
=> Number of feature type (3rd column): 2
* Level1: 0 =>
* level2: 0 =>
* level3: 2 => CDS exon
* unknown: 0 =>
=>Check because only level3 features:
* Number of feature with Parent attribute:0
* Number of feature with a common attribute:12610
=> Some common attributes and some Parent attributes missing.
/!\ For features where both are missing A single Level2 features (e.g. mRNA) and a single level1 (e.g. gene) will be created by AGAT, and all level3 feautres (e,g, CDS,exon) will be attached to them. This is probably not what you want...
see B. 2.2 and 3. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
/!\ For features where the common attribute or the parent attribute is missing, it would be fine as long as you do not expect isoforms in your annotation (Eukaryote). see B. 4. at https://agat.readthedocs.io/en/latest/agat_how_does_it_work.html
!! You might try to fix the issue by choosing a common tag attribute to use in order to group the features correctly (parameter --ct in agat_convert_sp_gxf2gxf.pl).
=> Version of the Bioperl GFF parser selected by AGAT: 2
------ End parsing (done in 2 second) ------
------ Start checks ------
---------------------------- Check1: feature types -----------------------------
----------------------------------- ontology -----------------------------------
All feature types in agreement with the Ontology.
------------------------------------- agat -------------------------------------
AGAT can deal with all the encountered feature types (3rd column)
------------------------------ done in 0 seconds -------------------------------
------------------------------ Check2: duplicates ------------------------------
None found
------------------------------ done in 0 seconds -------------------------------
-------------------------- Check3: sequential bucket ---------------------------
Nothing to check as sequential bucket!
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check4: l2 linked to l3 ----------------------------
L1 and L2 created:
AC007785.3--IGFL2 HAVANA gene 9589 13637 . + . FI_gene_label "IGFL2^ENSG00000204866.8" ; ID "AC007785.3--IGFL2^IGFL2^ENSG00000204866.8" ; ccdsid "CCDS46121.1" ; exon_id "ENSE00001739643.1" ; exon_number 1 ; gene_id "AC007785.3--IGFL2^IGFL2^ENSG00000204866.8" ; gene_name IGFL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182492.1" ; havana_transcript "OTTHUMT00000461705.1" ; hgnc_id "HGNC:32929" ; level 2 ; orig_coord_info "chr19,46148279,46148297,+" ; protein_id "ENSP00000366922.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "AC007785.3--IGFL2^ENST00000377693.4" ; transcript_name "IGFL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
AC007785.3--IGFL2 HAVANA mRNA 9589 13637 . + . FI_gene_label "IGFL2^ENSG00000204866.8" ; ID "AC007785.3--IGFL2^ENST00000377693.4" ; Parent "AC007785.3--IGFL2^IGFL2^ENSG00000204866.8" ; ccdsid "CCDS46121.1" ; exon_id "ENSE00001739643.1" ; exon_number 1 ; gene_id "AC007785.3--IGFL2^IGFL2^ENSG00000204866.8" ; gene_name IGFL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000182492.1" ; havana_transcript "OTTHUMT00000461705.1" ; hgnc_id "HGNC:32929" ; level 2 ; orig_coord_info "chr19,46148279,46148297,+" ; protein_id "ENSP00000366922.3" ; tag basic appris_alternative_2 CCDS ; transcript_id "AC007785.3--IGFL2^ENST00000377693.4" ; transcript_name "IGFL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC015911.9--SLFN12L HAVANA mRNA 4692 11059 . + . FI_gene_label "SLFN12L^ENSG00000205045.11" ; ID "AC015911.9--SLFN12L^ENST00000260908.12" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; exon_id "ENSE00003850559.1" ; exon_number 2 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000205045.11" ; gene_name SLFN12L ; gene_type protein_coding ; havana_gene "OTTHUMG00000193506.1" ; havana_transcript "OTTHUMT00000395748.3" ; hgnc_id "HGNC:33920" ; level 2 ; orig_coord_info "chr17,35479117,35480155,-" ; protein_id "ENSP00000437635.2" ; tag not_organism_supported basic appris_alternative_2 ; transcript_id "AC015911.9--SLFN12L^ENST00000260908.12" ; transcript_name "SLFN12L-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC217774.1--CRHR1 ENSEMBL gene 5276 16393 . + . FI_gene_label "CRHR1^ENSG00000120088.15" ; ID "AC217774.1--CRHR1^CRHR1^ENSG00000120088.15" ; exon_id "ENSE00003723000.1" ; exon_number 1 ; gene_id "AC217774.1--CRHR1^CRHR1^ENSG00000120088.15" ; gene_name CRHR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178271.8" ; hgnc_id "HGNC:2357" ; level 3 ; orig_coord_info "chr17,45784545,45784577,+" ; protein_id "ENSP00000293493.8" ; tag basic ; transcript_id "AC217774.1--CRHR1^ENST00000293493.11" ; transcript_name "CRHR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC217774.1--CRHR1 ENSEMBL mRNA 5276 16393 . + . FI_gene_label "CRHR1^ENSG00000120088.15" ; ID "AC217774.1--CRHR1^ENST00000293493.11" ; Parent "AC217774.1--CRHR1^CRHR1^ENSG00000120088.15" ; exon_id "ENSE00003723000.1" ; exon_number 1 ; gene_id "AC217774.1--CRHR1^CRHR1^ENSG00000120088.15" ; gene_name CRHR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178271.8" ; hgnc_id "HGNC:2357" ; level 3 ; orig_coord_info "chr17,45784545,45784577,+" ; protein_id "ENSP00000293493.8" ; tag basic ; transcript_id "AC217774.1--CRHR1^ENST00000293493.11" ; transcript_name "CRHR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC217774.2--CRHR1 ENSEMBL gene 5318 16435 . + . FI_gene_label "CRHR1^ENSG00000120088.15" ; ID "AC217774.2--CRHR1^CRHR1^ENSG00000120088.15" ; exon_id "ENSE00003723000.1" ; exon_number 1 ; gene_id "AC217774.2--CRHR1^CRHR1^ENSG00000120088.15" ; gene_name CRHR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178271.8" ; hgnc_id "HGNC:2357" ; level 3 ; orig_coord_info "chr17,45784545,45784577,+" ; protein_id "ENSP00000293493.8" ; tag basic ; transcript_id "AC217774.2--CRHR1^ENST00000293493.11" ; transcript_name "CRHR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
AC217774.2--CRHR1 ENSEMBL mRNA 5318 16435 . + . FI_gene_label "CRHR1^ENSG00000120088.15" ; ID "AC217774.2--CRHR1^ENST00000293493.11" ; Parent "AC217774.2--CRHR1^CRHR1^ENSG00000120088.15" ; exon_id "ENSE00003723000.1" ; exon_number 1 ; gene_id "AC217774.2--CRHR1^CRHR1^ENSG00000120088.15" ; gene_name CRHR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178271.8" ; hgnc_id "HGNC:2357" ; level 3 ; orig_coord_info "chr17,45784545,45784577,+" ; protein_id "ENSP00000293493.8" ; tag basic ; transcript_id "AC217774.2--CRHR1^ENST00000293493.11" ; transcript_name "CRHR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AL512590.2--CCDC180 HAVANA gene 14599 56298 . + . FI_gene_label "CCDC180^ENSG00000197816.16" ; ID "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; exon_id "ENSE00003898006.1" ; exon_number 2 ; gene_id "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; gene_name CCDC180 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167001.3" ; havana_transcript "OTTHUMT00000383515.4" ; hgnc_id "HGNC:29303" ; level 2 ; orig_coord_info "chr9,97308064,97308132,+" ; protein_id "ENSP00000434727.2" ; tag basic MANE_Select appris_principal_1 ; transcript_id "AL512590.2--CCDC180^ENST00000529487.3" ; transcript_name "CCDC180-210" ; transcript_support_level 1 ; transcript_type protein_coding
AL512590.2--CCDC180 HAVANA mRNA 14599 56298 . + . FI_gene_label "CCDC180^ENSG00000197816.16" ; ID "AL512590.2--CCDC180^ENST00000529487.3" ; Parent "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; exon_id "ENSE00003898006.1" ; exon_number 2 ; gene_id "AL512590.2--CCDC180^CCDC180^ENSG00000197816.16" ; gene_name CCDC180 ; gene_type protein_coding ; havana_gene "OTTHUMG00000167001.3" ; havana_transcript "OTTHUMT00000383515.4" ; hgnc_id "HGNC:29303" ; level 2 ; orig_coord_info "chr9,97308064,97308132,+" ; protein_id "ENSP00000434727.2" ; tag basic MANE_Select appris_principal_1 ; transcript_id "AL512590.2--CCDC180^ENST00000529487.3" ; transcript_name "CCDC180-210" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ATP11A--STK26 HAVANA gene 47638 59176 . + . FI_gene_label "STK26^ENSG00000134602.16" ; ID "ATP11A--STK26^STK26^ENSG00000134602.16" ; exon_id "ENSE00001608872.1" ; exon_number 2 ; gene_id "ATP11A--STK26^STK26^ENSG00000134602.16" ; gene_name STK26 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022420.3" ; havana_transcript "OTTHUMT00000058308.2" ; hgnc_id "HGNC:18174" ; level 1 ; orig_coord_info "chrX,132023618,132023659,+" ; protein_id "ENSP00000346755.6" ; tag basic exp_conf ; transcript_id "ATP11A--STK26^ENST00000354719.10" ; transcript_name "STK26-201" ; transcript_support_level 2 ; transcript_type protein_coding
ATP11A--STK26 HAVANA mRNA 47638 59176 . + . FI_gene_label "STK26^ENSG00000134602.16" ; ID "ATP11A--STK26^ENST00000354719.10" ; Parent "ATP11A--STK26^STK26^ENSG00000134602.16" ; exon_id "ENSE00001608872.1" ; exon_number 2 ; gene_id "ATP11A--STK26^STK26^ENSG00000134602.16" ; gene_name STK26 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022420.3" ; havana_transcript "OTTHUMT00000058308.2" ; hgnc_id "HGNC:18174" ; level 1 ; orig_coord_info "chrX,132023618,132023659,+" ; protein_id "ENSP00000346755.6" ; tag basic exp_conf ; transcript_id "ATP11A--STK26^ENST00000354719.10" ; transcript_name "STK26-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
ATP11A--STK26 ENSEMBL gene 1001 44637 . + . FI_gene_label "ATP11A^ENSG00000068650.18" ; ID "ATP11A--STK26^ATP11A^ENSG00000068650.18" ; exon_id "ENSE00001740661.1" ; exon_number 1 ; gene_id "ATP11A--STK26^ATP11A^ENSG00000068650.18" ; gene_name ATP11A ; gene_type protein_coding ; havana_gene "OTTHUMG00000017371.10" ; hgnc_id "HGNC:13552" ; level 3 ; orig_coord_info "chr13,112690417,112690455,+" ; protein_id "ENSP00000364781.2" ; tag basic appris_alternative_2 ; transcript_id "ATP11A--STK26^ENST00000375630.6" ; transcript_name "ATP11A-201" ; transcript_support_level 5 ; transcript_type protein_coding
ATP11A--STK26 ENSEMBL mRNA 1001 44637 . + . FI_gene_label "ATP11A^ENSG00000068650.18" ; ID "ATP11A--STK26^ENST00000375630.6" ; Parent "ATP11A--STK26^ATP11A^ENSG00000068650.18" ; exon_id "ENSE00001740661.1" ; exon_number 1 ; gene_id "ATP11A--STK26^ATP11A^ENSG00000068650.18" ; gene_name ATP11A ; gene_type protein_coding ; havana_gene "OTTHUMG00000017371.10" ; hgnc_id "HGNC:13552" ; level 3 ; orig_coord_info "chr13,112690417,112690455,+" ; protein_id "ENSP00000364781.2" ; tag basic appris_alternative_2 ; transcript_id "ATP11A--STK26^ENST00000375630.6" ; transcript_name "ATP11A-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
BCL2--ZNF521 HAVANA gene 1360 19612 . + . FI_gene_label "BCL2^ENSG00000171791.14" ; ID "BCL2--ZNF521^BCL2^ENSG00000171791.14" ; ccdsid "CCDS11981.1" ; exon_id "ENSE00001230844.1" ; exon_number 2 ; gene_id "BCL2--ZNF521^BCL2^ENSG00000171791.14" ; gene_name BCL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132791.5" ; havana_transcript "OTTHUMT00000450052.2" ; hgnc_id "HGNC:990" ; level 2 ; orig_coord_info "chr18,63318082,63318666,-" ; protein_id "ENSP00000329623.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "BCL2--ZNF521^ENST00000333681.5" ; transcript_name "BCL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCL2--ZNF521 HAVANA mRNA 1360 19612 . + . FI_gene_label "BCL2^ENSG00000171791.14" ; ID "BCL2--ZNF521^ENST00000333681.5" ; Parent "BCL2--ZNF521^BCL2^ENSG00000171791.14" ; ccdsid "CCDS11981.1" ; exon_id "ENSE00001230844.1" ; exon_number 2 ; gene_id "BCL2--ZNF521^BCL2^ENSG00000171791.14" ; gene_name BCL2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132791.5" ; havana_transcript "OTTHUMT00000450052.2" ; hgnc_id "HGNC:990" ; level 2 ; orig_coord_info "chr18,63318082,63318666,-" ; protein_id "ENSP00000329623.3" ; tag alternative_5_UTR basic MANE_Select appris_principal_1 CCDS ; transcript_id "BCL2--ZNF521^ENST00000333681.5" ; transcript_name "BCL2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
BCL2--ZNF521 HAVANA gene 22637 42744 . + . FI_gene_label "ZNF521^ENSG00000198795.11" ; ID "BCL2--ZNF521^ZNF521^ENSG00000198795.11" ; ccdsid "CCDS32806.1" ; exon_id "ENSE00003542563.1" ; exon_number 2 ; gene_id "BCL2--ZNF521^ZNF521^ENSG00000198795.11" ; gene_name ZNF521 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179511.4" ; havana_transcript "OTTHUMT00000446781.3" ; hgnc_id "HGNC:24605" ; level 2 ; orig_coord_info "chr18,25350907,25350946,-" ; protein_id "ENSP00000354794.3" ; tag overlapping_uORF basic MANE_Select appris_principal_1 CCDS ; transcript_id "BCL2--ZNF521^ENST00000361524.8" ; transcript_name "ZNF521-201" ; transcript_support_level 1 ; transcript_type protein_coding
BCL2--ZNF521 HAVANA mRNA 22637 42744 . + . FI_gene_label "ZNF521^ENSG00000198795.11" ; ID "BCL2--ZNF521^ENST00000361524.8" ; Parent "BCL2--ZNF521^ZNF521^ENSG00000198795.11" ; ccdsid "CCDS32806.1" ; exon_id "ENSE00003542563.1" ; exon_number 2 ; gene_id "BCL2--ZNF521^ZNF521^ENSG00000198795.11" ; gene_name ZNF521 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179511.4" ; havana_transcript "OTTHUMT00000446781.3" ; hgnc_id "HGNC:24605" ; level 2 ; orig_coord_info "chr18,25350907,25350946,-" ; protein_id "ENSP00000354794.3" ; tag overlapping_uORF basic MANE_Select appris_principal_1 CCDS ; transcript_id "BCL2--ZNF521^ENST00000361524.8" ; transcript_name "ZNF521-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DOCK9--SERPINE2 HAVANA gene 66170 84724 . + . FI_gene_label "SERPINE2^ENSG00000135919.14" ; ID "DOCK9--SERPINE2^SERPINE2^ENSG00000135919.14" ; ccdsid "CCDS2460.1" ; exon_id "ENSE00003593798.1" ; exon_number 2 ; gene_id "DOCK9--SERPINE2^SERPINE2^ENSG00000135919.14" ; gene_name SERPINE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133163.8" ; havana_transcript "OTTHUMT00000256865.3" ; hgnc_id "HGNC:8951" ; level 2 ; orig_coord_info "chr2,224001642,224001900,-" ; protein_id "ENSP00000258405.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "DOCK9--SERPINE2^ENST00000258405.9" ; transcript_name "SERPINE2-201" ; transcript_support_level 1 ; transcript_type protein_coding
DOCK9--SERPINE2 HAVANA mRNA 66170 84724 . + . FI_gene_label "SERPINE2^ENSG00000135919.14" ; ID "DOCK9--SERPINE2^ENST00000258405.9" ; Parent "DOCK9--SERPINE2^SERPINE2^ENSG00000135919.14" ; ccdsid "CCDS2460.1" ; exon_id "ENSE00003593798.1" ; exon_number 2 ; gene_id "DOCK9--SERPINE2^SERPINE2^ENSG00000135919.14" ; gene_name SERPINE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133163.8" ; havana_transcript "OTTHUMT00000256865.3" ; hgnc_id "HGNC:8951" ; level 2 ; orig_coord_info "chr2,224001642,224001900,-" ; protein_id "ENSP00000258405.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "DOCK9--SERPINE2^ENST00000258405.9" ; transcript_name "SERPINE2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DOCK9--SERPINE2 HAVANA gene 2676 54478 . + . FI_gene_label "DOCK9^ENSG00000088387.19" ; ID "DOCK9--SERPINE2^DOCK9^ENSG00000088387.19" ; exon_id "ENSE00003799747.1" ; exon_number 1 ; gene_id "DOCK9--SERPINE2^DOCK9^ENSG00000088387.19" ; gene_name DOCK9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017260.8" ; havana_transcript "OTTHUMT00000490487.1" ; hgnc_id "HGNC:14132" ; level 2 ; orig_coord_info "chr13,99015447,99015608,-" ; protein_id "ENSP00000341086.4" ; transcript_id "DOCK9--SERPINE2^ENST00000339416.7" ; transcript_name "DOCK9-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
DOCK9--SERPINE2 HAVANA mRNA 2676 54478 . + . FI_gene_label "DOCK9^ENSG00000088387.19" ; ID "DOCK9--SERPINE2^ENST00000339416.7" ; Parent "DOCK9--SERPINE2^DOCK9^ENSG00000088387.19" ; exon_id "ENSE00003799747.1" ; exon_number 1 ; gene_id "DOCK9--SERPINE2^DOCK9^ENSG00000088387.19" ; gene_name DOCK9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000017260.8" ; havana_transcript "OTTHUMT00000490487.1" ; hgnc_id "HGNC:14132" ; level 2 ; orig_coord_info "chr13,99015447,99015608,-" ; protein_id "ENSP00000341086.4" ; transcript_id "DOCK9--SERPINE2^ENST00000339416.7" ; transcript_name "DOCK9-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
DTNB--SERPINE2 HAVANA gene 37552 56106 . + . FI_gene_label "SERPINE2^ENSG00000135919.14" ; ID "DTNB--SERPINE2^SERPINE2^ENSG00000135919.14" ; ccdsid "CCDS2460.1" ; exon_id "ENSE00003593798.1" ; exon_number 2 ; gene_id "DTNB--SERPINE2^SERPINE2^ENSG00000135919.14" ; gene_name SERPINE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133163.8" ; havana_transcript "OTTHUMT00000256865.3" ; hgnc_id "HGNC:8951" ; level 2 ; orig_coord_info "chr2,224001642,224001900,-" ; protein_id "ENSP00000258405.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "DTNB--SERPINE2^ENST00000258405.9" ; transcript_name "SERPINE2-201" ; transcript_support_level 1 ; transcript_type protein_coding
DTNB--SERPINE2 HAVANA mRNA 37552 56106 . + . FI_gene_label "SERPINE2^ENSG00000135919.14" ; ID "DTNB--SERPINE2^ENST00000258405.9" ; Parent "DTNB--SERPINE2^SERPINE2^ENSG00000135919.14" ; ccdsid "CCDS2460.1" ; exon_id "ENSE00003593798.1" ; exon_number 2 ; gene_id "DTNB--SERPINE2^SERPINE2^ENSG00000135919.14" ; gene_name SERPINE2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000133163.8" ; havana_transcript "OTTHUMT00000256865.3" ; hgnc_id "HGNC:8951" ; level 2 ; orig_coord_info "chr2,224001642,224001900,-" ; protein_id "ENSP00000258405.4" ; tag basic appris_alternative_1 CCDS ; transcript_id "DTNB--SERPINE2^ENST00000258405.9" ; transcript_name "SERPINE2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
DTNB--SERPINE2 HAVANA gene 1001 34472 . + . FI_gene_label "DTNB^ENSG00000138101.19" ; ID "DTNB--SERPINE2^DTNB^ENSG00000138101.19" ; ccdsid "CCDS74496.1" ; exon_id "ENSE00003490243.1" ; exon_number 2 ; gene_id "DTNB--SERPINE2^DTNB^ENSG00000138101.19" ; gene_name DTNB ; gene_type protein_coding ; havana_gene "OTTHUMG00000152129.7" ; hgnc_id "HGNC:3058" ; level 2 ; orig_coord_info "chr2,25652594,25652660,-" ; protein_id "ENSP00000288642.9" ; tag basic appris_alternative_1 CCDS ; transcript_id "DTNB--SERPINE2^ENST00000288642.12" ; transcript_name "DTNB-201" ; transcript_support_level 2 ; transcript_type protein_coding
DTNB--SERPINE2 HAVANA mRNA 1001 34472 . + . FI_gene_label "DTNB^ENSG00000138101.19" ; ID "DTNB--SERPINE2^ENST00000288642.12" ; Parent "DTNB--SERPINE2^DTNB^ENSG00000138101.19" ; ccdsid "CCDS74496.1" ; exon_id "ENSE00003490243.1" ; exon_number 2 ; gene_id "DTNB--SERPINE2^DTNB^ENSG00000138101.19" ; gene_name DTNB ; gene_type protein_coding ; havana_gene "OTTHUMG00000152129.7" ; hgnc_id "HGNC:3058" ; level 2 ; orig_coord_info "chr2,25652594,25652660,-" ; protein_id "ENSP00000288642.9" ; tag basic appris_alternative_1 CCDS ; transcript_id "DTNB--SERPINE2^ENST00000288642.12" ; transcript_name "DTNB-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
DTNB--USP21P1 HAVANA gene 1001 34472 . + . FI_gene_label "DTNB^ENSG00000138101.19" ; ID "DTNB--USP21P1^DTNB^ENSG00000138101.19" ; ccdsid "CCDS74496.1" ; exon_id "ENSE00003490243.1" ; exon_number 2 ; gene_id "DTNB--USP21P1^DTNB^ENSG00000138101.19" ; gene_name DTNB ; gene_type protein_coding ; havana_gene "OTTHUMG00000152129.7" ; hgnc_id "HGNC:3058" ; level 2 ; orig_coord_info "chr2,25652594,25652660,-" ; protein_id "ENSP00000288642.9" ; tag basic appris_alternative_1 CCDS ; transcript_id "DTNB--USP21P1^ENST00000288642.12" ; transcript_name "DTNB-201" ; transcript_support_level 2 ; transcript_type protein_coding
DTNB--USP21P1 HAVANA mRNA 1001 34472 . + . FI_gene_label "DTNB^ENSG00000138101.19" ; ID "DTNB--USP21P1^ENST00000288642.12" ; Parent "DTNB--USP21P1^DTNB^ENSG00000138101.19" ; ccdsid "CCDS74496.1" ; exon_id "ENSE00003490243.1" ; exon_number 2 ; gene_id "DTNB--USP21P1^DTNB^ENSG00000138101.19" ; gene_name DTNB ; gene_type protein_coding ; havana_gene "OTTHUMG00000152129.7" ; hgnc_id "HGNC:3058" ; level 2 ; orig_coord_info "chr2,25652594,25652660,-" ; protein_id "ENSP00000288642.9" ; tag basic appris_alternative_1 CCDS ; transcript_id "DTNB--USP21P1^ENST00000288642.12" ; transcript_name "DTNB-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
EML4--ALK HAVANA gene 1001 31063 . + . FI_gene_label "EML4^ENSG00000143924.19" ; ID "EML4--ALK^EML4^ENSG00000143924.19" ; ccdsid "CCDS1807.1" ; exon_id "ENSE00001548738.1" ; exon_number 1 ; gene_id "EML4--ALK^EML4^ENSG00000143924.19" ; gene_name EML4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128603.7" ; havana_transcript "OTTHUMT00000250463.4" ; hgnc_id "HGNC:1316" ; level 2 ; orig_coord_info "chr2,42169612,42169636,+" ; protein_id "ENSP00000320663.5" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "EML4--ALK^ENST00000318522.10" ; transcript_name "EML4-201" ; transcript_support_level 1 ; transcript_type protein_coding
EML4--ALK HAVANA mRNA 1001 31063 . + . FI_gene_label "EML4^ENSG00000143924.19" ; ID "EML4--ALK^ENST00000318522.10" ; Parent "EML4--ALK^EML4^ENSG00000143924.19" ; ccdsid "CCDS1807.1" ; exon_id "ENSE00001548738.1" ; exon_number 1 ; gene_id "EML4--ALK^EML4^ENSG00000143924.19" ; gene_name EML4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000128603.7" ; havana_transcript "OTTHUMT00000250463.4" ; hgnc_id "HGNC:1316" ; level 2 ; orig_coord_info "chr2,42169612,42169636,+" ; protein_id "ENSP00000320663.5" ; tag basic MANE_Select appris_principal_3 CCDS ; transcript_id "EML4--ALK^ENST00000318522.10" ; transcript_name "EML4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
EML4--ALK HAVANA gene 34064 69068 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "EML4--ALK^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "EML4--ALK^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EML4--ALK^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
EML4--ALK HAVANA mRNA 34064 69068 . + . FI_gene_label "ALK^ENSG00000171094.18" ; ID "EML4--ALK^ENST00000389048.8" ; Parent "EML4--ALK^ALK^ENSG00000171094.18" ; ccdsid "CCDS33172.1" ; exon_id "ENSE00001794937.2" ; exon_number 1 ; gene_id "EML4--ALK^ALK^ENSG00000171094.18" ; gene_name ALK ; gene_type protein_coding ; havana_gene "OTTHUMG00000152034.4" ; havana_transcript "OTTHUMT00000324994.2" ; hgnc_id "HGNC:427" ; level 2 ; orig_coord_info "chr2,29919993,29920659,-" ; protein_id "ENSP00000373700.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "EML4--ALK^ENST00000389048.8" ; transcript_name "ALK-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
FBXO25--AC240565.1 HAVANA gene 2640 15007 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "FBXO25--AC240565.1^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
FBXO25--AC240565.1 HAVANA mRNA 2640 15007 . + . FI_gene_label "FBXO25^ENSG00000147364.17" ; ID "FBXO25--AC240565.1^ENST00000276326.9" ; Parent "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; ccdsid "CCDS5954.1" ; exon_id "ENSE00003460930.1" ; exon_number 2 ; gene_id "FBXO25--AC240565.1^FBXO25^ENSG00000147364.17" ; gene_name FBXO25 ; gene_type protein_coding ; havana_gene "OTTHUMG00000090341.8" ; havana_transcript "OTTHUMT00000206713.2" ; hgnc_id "HGNC:13596" ; level 2 ; orig_coord_info "chr8,431358,431444,+" ; protein_id "ENSP00000276326.6" ; tag basic CCDS ; transcript_id "FBXO25--AC240565.1^ENST00000276326.9" ; transcript_name "FBXO25-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
GFPT1--ENOX2 HAVANA gene 30018 49280 . + . FI_gene_label "ENOX2^ENSG00000165675.17" ; ID "GFPT1--ENOX2^ENOX2^ENSG00000165675.17" ; ccdsid "CCDS14626.1" ; exon_id "ENSE00003640935.1" ; exon_number 4 ; gene_id "GFPT1--ENOX2^ENOX2^ENSG00000165675.17" ; gene_name ENOX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022401.2" ; hgnc_id "HGNC:2259" ; level 2 ; orig_coord_info "chrX,130709243,130709291,-" ; protein_id "ENSP00000337146.3" ; tag basic CCDS ; transcript_id "GFPT1--ENOX2^ENST00000338144.7" ; transcript_name "ENOX2-201" ; transcript_support_level 2 ; transcript_type protein_coding
GFPT1--ENOX2 HAVANA mRNA 30018 49280 . + . FI_gene_label "ENOX2^ENSG00000165675.17" ; ID "GFPT1--ENOX2^ENST00000338144.7" ; Parent "GFPT1--ENOX2^ENOX2^ENSG00000165675.17" ; ccdsid "CCDS14626.1" ; exon_id "ENSE00003640935.1" ; exon_number 4 ; gene_id "GFPT1--ENOX2^ENOX2^ENSG00000165675.17" ; gene_name ENOX2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022401.2" ; hgnc_id "HGNC:2259" ; level 2 ; orig_coord_info "chrX,130709243,130709291,-" ; protein_id "ENSP00000337146.3" ; tag basic CCDS ; transcript_id "GFPT1--ENOX2^ENST00000338144.7" ; transcript_name "ENOX2-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
GFPT1--ENOX2 HAVANA gene 1024 27017 . + . FI_gene_label "GFPT1^ENSG00000198380.13" ; ID "GFPT1--ENOX2^GFPT1^ENSG00000198380.13" ; ccdsid "CCDS58713.1" ; exon_id "ENSE00003470909.3" ; exon_number 1 ; gene_id "GFPT1--ENOX2^GFPT1^ENSG00000198380.13" ; gene_name GFPT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152666.5" ; havana_transcript "OTTHUMT00000327277.3" ; hgnc_id "HGNC:4241" ; level 2 ; orig_coord_info "chr2,69387065,69387071,-" ; protein_id "ENSP00000349860.4" ; tag CAGE_supported_TSS RNA_Seq_supported_partial basic MANE_Select CCDS ; transcript_id "GFPT1--ENOX2^ENST00000357308.9" ; transcript_name "GFPT1-201" ; transcript_support_level 5 ; transcript_type protein_coding
GFPT1--ENOX2 HAVANA mRNA 1024 27017 . + . FI_gene_label "GFPT1^ENSG00000198380.13" ; ID "GFPT1--ENOX2^ENST00000357308.9" ; Parent "GFPT1--ENOX2^GFPT1^ENSG00000198380.13" ; ccdsid "CCDS58713.1" ; exon_id "ENSE00003470909.3" ; exon_number 1 ; gene_id "GFPT1--ENOX2^GFPT1^ENSG00000198380.13" ; gene_name GFPT1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152666.5" ; havana_transcript "OTTHUMT00000327277.3" ; hgnc_id "HGNC:4241" ; level 2 ; orig_coord_info "chr2,69387065,69387071,-" ; protein_id "ENSP00000349860.4" ; tag CAGE_supported_TSS RNA_Seq_supported_partial basic MANE_Select CCDS ; transcript_id "GFPT1--ENOX2^ENST00000357308.9" ; transcript_name "GFPT1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
IGFL1P2--HIF3A HAVANA gene 5593 23988 . + . FI_gene_label "HIF3A^ENSG00000124440.16" ; ID "IGFL1P2--HIF3A^HIF3A^ENSG00000124440.16" ; ccdsid "CCDS42580.2" ; exon_id "ENSE00003567095.1" ; exon_number 2 ; gene_id "IGFL1P2--HIF3A^HIF3A^ENSG00000124440.16" ; gene_name HIF3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000141296.6" ; havana_transcript "OTTHUMT00000384749.1" ; hgnc_id "HGNC:15825" ; level 2 ; orig_coord_info "chr19,46303933,46304088,+" ; protein_id "ENSP00000244303.6" ; tag basic CCDS ; transcript_id "IGFL1P2--HIF3A^ENST00000244303.10" ; transcript_name "HIF3A-202" ; transcript_support_level 2 ; transcript_type protein_coding
IGFL1P2--HIF3A HAVANA mRNA 5593 23988 . + . FI_gene_label "HIF3A^ENSG00000124440.16" ; ID "IGFL1P2--HIF3A^ENST00000244303.10" ; Parent "IGFL1P2--HIF3A^HIF3A^ENSG00000124440.16" ; ccdsid "CCDS42580.2" ; exon_id "ENSE00003567095.1" ; exon_number 2 ; gene_id "IGFL1P2--HIF3A^HIF3A^ENSG00000124440.16" ; gene_name HIF3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000141296.6" ; havana_transcript "OTTHUMT00000384749.1" ; hgnc_id "HGNC:15825" ; level 2 ; orig_coord_info "chr19,46303933,46304088,+" ; protein_id "ENSP00000244303.6" ; tag basic CCDS ; transcript_id "IGFL1P2--HIF3A^ENST00000244303.10" ; transcript_name "HIF3A-202" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
KDM3A--TOP1 HAVANA gene 1725 30736 . + . FI_gene_label "KDM3A^ENSG00000115548.17" ; ID "KDM3A--TOP1^KDM3A^ENSG00000115548.17" ; ccdsid "CCDS1990.1" ; exon_id "ENSE00003892294.1" ; exon_number 2 ; gene_id "KDM3A--TOP1^KDM3A^ENSG00000115548.17" ; gene_name KDM3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000130204.8" ; havana_transcript "OTTHUMT00000504337.2" ; hgnc_id "HGNC:20815" ; level 2 ; orig_coord_info "chr2,86442048,86442233,+" ; protein_id "ENSP00000323659.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KDM3A--TOP1^ENST00000312912.10" ; transcript_name "KDM3A-201" ; transcript_support_level 1 ; transcript_type protein_coding
KDM3A--TOP1 HAVANA mRNA 1725 30736 . + . FI_gene_label "KDM3A^ENSG00000115548.17" ; ID "KDM3A--TOP1^ENST00000312912.10" ; Parent "KDM3A--TOP1^KDM3A^ENSG00000115548.17" ; ccdsid "CCDS1990.1" ; exon_id "ENSE00003892294.1" ; exon_number 2 ; gene_id "KDM3A--TOP1^KDM3A^ENSG00000115548.17" ; gene_name KDM3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000130204.8" ; havana_transcript "OTTHUMT00000504337.2" ; hgnc_id "HGNC:20815" ; level 2 ; orig_coord_info "chr2,86442048,86442233,+" ; protein_id "ENSP00000323659.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KDM3A--TOP1^ENST00000312912.10" ; transcript_name "KDM3A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KDM3A--TOP1 HAVANA gene 33737 61840 . + . FI_gene_label "TOP1^ENSG00000198900.7" ; ID "KDM3A--TOP1^TOP1^ENSG00000198900.7" ; ccdsid "CCDS13312.1" ; exon_id "ENSE00001174143.5" ; exon_number 1 ; gene_id "KDM3A--TOP1^TOP1^ENSG00000198900.7" ; gene_name TOP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033057.3" ; havana_transcript "OTTHUMT00000080397.3" ; hgnc_id "HGNC:11986" ; level 2 ; orig_coord_info "chr20,41029068,41029100,+" ; protein_id "ENSP00000354522.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KDM3A--TOP1^ENST00000361337.3" ; transcript_name "TOP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KDM3A--TOP1 HAVANA mRNA 33737 61840 . + . FI_gene_label "TOP1^ENSG00000198900.7" ; ID "KDM3A--TOP1^ENST00000361337.3" ; Parent "KDM3A--TOP1^TOP1^ENSG00000198900.7" ; ccdsid "CCDS13312.1" ; exon_id "ENSE00001174143.5" ; exon_number 1 ; gene_id "KDM3A--TOP1^TOP1^ENSG00000198900.7" ; gene_name TOP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033057.3" ; havana_transcript "OTTHUMT00000080397.3" ; hgnc_id "HGNC:11986" ; level 2 ; orig_coord_info "chr20,41029068,41029100,+" ; protein_id "ENSP00000354522.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KDM3A--TOP1^ENST00000361337.3" ; transcript_name "TOP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KDM5C--KMT2C HAVANA gene 26177 99796 . + . FI_gene_label "KMT2C^ENSG00000055609.20" ; ID "KDM5C--KMT2C^KMT2C^ENSG00000055609.20" ; ccdsid "CCDS5931.1" ; exon_id "ENSE00003850683.1" ; exon_number 1 ; gene_id "KDM5C--KMT2C^KMT2C^ENSG00000055609.20" ; gene_name KMT2C ; gene_type protein_coding ; havana_gene "OTTHUMG00000150553.7" ; havana_transcript "OTTHUMT00000318887.4" ; hgnc_id "HGNC:13726" ; level 2 ; orig_coord_info "chr7,152435626,152435786,-" ; protein_id "ENSP00000262189.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "KDM5C--KMT2C^ENST00000262189.11" ; transcript_name "KMT2C-201" ; transcript_support_level 1 ; transcript_type protein_coding
KDM5C--KMT2C HAVANA mRNA 26177 99796 . + . FI_gene_label "KMT2C^ENSG00000055609.20" ; ID "KDM5C--KMT2C^ENST00000262189.11" ; Parent "KDM5C--KMT2C^KMT2C^ENSG00000055609.20" ; ccdsid "CCDS5931.1" ; exon_id "ENSE00003850683.1" ; exon_number 1 ; gene_id "KDM5C--KMT2C^KMT2C^ENSG00000055609.20" ; gene_name KMT2C ; gene_type protein_coding ; havana_gene "OTTHUMG00000150553.7" ; havana_transcript "OTTHUMT00000318887.4" ; hgnc_id "HGNC:13726" ; level 2 ; orig_coord_info "chr7,152435626,152435786,-" ; protein_id "ENSP00000262189.6" ; tag basic MANE_Select appris_principal_2 CCDS ; transcript_id "KDM5C--KMT2C^ENST00000262189.11" ; transcript_name "KMT2C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KDM5C--KMT2C HAVANA gene 1225 2797 . + . FI_gene_label "KDM5C^ENSG00000126012.12" ; ID "KDM5C--KMT2C^KDM5C^ENSG00000126012.12" ; exon_id "ENSE00001682058.1" ; exon_number 1 ; gene_id "KDM5C--KMT2C^KDM5C^ENSG00000126012.12" ; gene_name KDM5C ; gene_type protein_coding ; havana_gene "OTTHUMG00000021606.2" ; havana_transcript "OTTHUMT00000318613.1" ; hgnc_id "HGNC:11114" ; level 2 ; orig_coord_info "chrX,53224740,53224889,-" ; protein_id "ENSP00000344004.6" ; transcript_id "KDM5C--KMT2C^ENST00000349663.6" ; transcript_name "KDM5C-201" ; transcript_support_level 4 ; transcript_type nonsense_mediated_decay
KDM5C--KMT2C HAVANA mRNA 1225 2797 . + . FI_gene_label "KDM5C^ENSG00000126012.12" ; ID "KDM5C--KMT2C^ENST00000349663.6" ; Parent "KDM5C--KMT2C^KDM5C^ENSG00000126012.12" ; exon_id "ENSE00001682058.1" ; exon_number 1 ; gene_id "KDM5C--KMT2C^KDM5C^ENSG00000126012.12" ; gene_name KDM5C ; gene_type protein_coding ; havana_gene "OTTHUMG00000021606.2" ; havana_transcript "OTTHUMT00000318613.1" ; hgnc_id "HGNC:11114" ; level 2 ; orig_coord_info "chrX,53224740,53224889,-" ; protein_id "ENSP00000344004.6" ; transcript_id "KDM5C--KMT2C^ENST00000349663.6" ; transcript_name "KDM5C-201" ; transcript_support_level 4 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 7417 15704 . + . FI_gene_label "KLRK1^ENSG00000213809.9" ; ID "KLRC4--KLRK1^ENST00000240618.11" ; Parent "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; ccdsid "CCDS8623.1" ; exon_id "ENSE00003640305.1" ; exon_number 2 ; gene_id "KLRC4--KLRK1^KLRK1^ENSG00000213809.9" ; gene_name KLRK1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168574.3" ; havana_transcript "OTTHUMT00000400269.2" ; hgnc_id "HGNC:18788" ; level 2 ; orig_coord_info "chr12,10388771,10388810,-" ; protein_id "ENSP00000240618.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000240618.11" ; transcript_name "KLRK1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
KLRC4--KLRK1 HAVANA gene 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
KLRC4--KLRK1 HAVANA mRNA 1001 3376 . + . FI_gene_label "KLRC4^ENSG00000183542.5" ; ID "KLRC4--KLRK1^ENST00000309384.2" ; Parent "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; ccdsid "CCDS8624.1" ; exon_id "ENSE00001145174.1" ; exon_number 1 ; gene_id "KLRC4--KLRK1^KLRC4^ENSG00000183542.5" ; gene_name KLRC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000168575.2" ; havana_transcript "OTTHUMT00000400108.2" ; hgnc_id "HGNC:6377" ; level 2 ; orig_coord_info "chr12,10409389,10409575,-" ; protein_id "ENSP00000310216.1" ; tag basic appris_principal_1 CCDS ; transcript_id "KLRC4--KLRK1^ENST00000309384.2" ; transcript_name "KLRC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LINC01654--IGSF21 HAVANA gene 8472 20132 . + . FI_gene_label "IGSF21^ENSG00000117154.12" ; ID "LINC01654--IGSF21^IGSF21^ENSG00000117154.12" ; ccdsid "CCDS184.1" ; exon_id "ENSE00001267449.3" ; exon_number 1 ; gene_id "LINC01654--IGSF21^IGSF21^ENSG00000117154.12" ; gene_name IGSF21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002432.4" ; havana_transcript "OTTHUMT00000006924.2" ; hgnc_id "HGNC:28246" ; level 2 ; orig_coord_info "chr1,18108129,18108198,+" ; protein_id "ENSP00000251296.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LINC01654--IGSF21^ENST00000251296.4" ; transcript_name "IGSF21-201" ; transcript_support_level 1 ; transcript_type protein_coding
LINC01654--IGSF21 HAVANA mRNA 8472 20132 . + . FI_gene_label "IGSF21^ENSG00000117154.12" ; ID "LINC01654--IGSF21^ENST00000251296.4" ; Parent "LINC01654--IGSF21^IGSF21^ENSG00000117154.12" ; ccdsid "CCDS184.1" ; exon_id "ENSE00001267449.3" ; exon_number 1 ; gene_id "LINC01654--IGSF21^IGSF21^ENSG00000117154.12" ; gene_name IGSF21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000002432.4" ; havana_transcript "OTTHUMT00000006924.2" ; hgnc_id "HGNC:28246" ; level 2 ; orig_coord_info "chr1,18108129,18108198,+" ; protein_id "ENSP00000251296.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LINC01654--IGSF21^ENST00000251296.4" ; transcript_name "IGSF21-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LINC02210--CRHR1 ENSEMBL gene 28324 39441 . + . FI_gene_label "CRHR1^ENSG00000120088.15" ; ID "LINC02210--CRHR1^CRHR1^ENSG00000120088.15" ; exon_id "ENSE00003723000.1" ; exon_number 1 ; gene_id "LINC02210--CRHR1^CRHR1^ENSG00000120088.15" ; gene_name CRHR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178271.8" ; hgnc_id "HGNC:2357" ; level 3 ; orig_coord_info "chr17,45784545,45784577,+" ; protein_id "ENSP00000293493.8" ; tag basic ; transcript_id "LINC02210--CRHR1^ENST00000293493.11" ; transcript_name "CRHR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
LINC02210--CRHR1 ENSEMBL mRNA 28324 39441 . + . FI_gene_label "CRHR1^ENSG00000120088.15" ; ID "LINC02210--CRHR1^ENST00000293493.11" ; Parent "LINC02210--CRHR1^CRHR1^ENSG00000120088.15" ; exon_id "ENSE00003723000.1" ; exon_number 1 ; gene_id "LINC02210--CRHR1^CRHR1^ENSG00000120088.15" ; gene_name CRHR1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000178271.8" ; hgnc_id "HGNC:2357" ; level 3 ; orig_coord_info "chr17,45784545,45784577,+" ; protein_id "ENSP00000293493.8" ; tag basic ; transcript_id "LINC02210--CRHR1^ENST00000293493.11" ; transcript_name "CRHR1-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
LRCH2--SPANXN1 HAVANA gene 1001 19783 . + . FI_gene_label "LRCH2^ENSG00000130224.15" ; ID "LRCH2--SPANXN1^LRCH2^ENSG00000130224.15" ; ccdsid "CCDS48155.1" ; exon_id "ENSE00003847550.1" ; exon_number 1 ; gene_id "LRCH2--SPANXN1^LRCH2^ENSG00000130224.15" ; gene_name LRCH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022233.4" ; havana_transcript "OTTHUMT00000057971.4" ; hgnc_id "HGNC:29292" ; level 2 ; orig_coord_info "chrX,115233693,115234041,-" ; protein_id "ENSP00000325091.8" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "LRCH2--SPANXN1^ENST00000317135.13" ; transcript_name "LRCH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRCH2--SPANXN1 HAVANA mRNA 1001 19783 . + . FI_gene_label "LRCH2^ENSG00000130224.15" ; ID "LRCH2--SPANXN1^ENST00000317135.13" ; Parent "LRCH2--SPANXN1^LRCH2^ENSG00000130224.15" ; ccdsid "CCDS48155.1" ; exon_id "ENSE00003847550.1" ; exon_number 1 ; gene_id "LRCH2--SPANXN1^LRCH2^ENSG00000130224.15" ; gene_name LRCH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022233.4" ; havana_transcript "OTTHUMT00000057971.4" ; hgnc_id "HGNC:29292" ; level 2 ; orig_coord_info "chrX,115233693,115234041,-" ; protein_id "ENSP00000325091.8" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "LRCH2--SPANXN1^ENST00000317135.13" ; transcript_name "LRCH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRCH2--SPANXN1 HAVANA gene 22784 24480 . + . FI_gene_label "SPANXN1^ENSG00000203923.5" ; ID "LRCH2--SPANXN1^SPANXN1^ENSG00000203923.5" ; ccdsid "CCDS35421.1" ; exon_id "ENSE00001842908.2" ; exon_number 1 ; gene_id "LRCH2--SPANXN1^SPANXN1^ENSG00000203923.5" ; gene_name SPANXN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022593.3" ; havana_transcript "OTTHUMT00000058631.3" ; hgnc_id "HGNC:33174" ; level 2 ; orig_coord_info "chrX,145247587,145247661,+" ; protein_id "ENSP00000359524.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRCH2--SPANXN1^ENST00000370493.4" ; transcript_name "SPANXN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRCH2--SPANXN1 HAVANA mRNA 22784 24480 . + . FI_gene_label "SPANXN1^ENSG00000203923.5" ; ID "LRCH2--SPANXN1^ENST00000370493.4" ; Parent "LRCH2--SPANXN1^SPANXN1^ENSG00000203923.5" ; ccdsid "CCDS35421.1" ; exon_id "ENSE00001842908.2" ; exon_number 1 ; gene_id "LRCH2--SPANXN1^SPANXN1^ENSG00000203923.5" ; gene_name SPANXN1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022593.3" ; havana_transcript "OTTHUMT00000058631.3" ; hgnc_id "HGNC:33174" ; level 2 ; orig_coord_info "chrX,145247587,145247661,+" ; protein_id "ENSP00000359524.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "LRCH2--SPANXN1^ENST00000370493.4" ; transcript_name "SPANXN1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
LRCH2--TRMT1P1 HAVANA gene 1001 19783 . + . FI_gene_label "LRCH2^ENSG00000130224.15" ; ID "LRCH2--TRMT1P1^LRCH2^ENSG00000130224.15" ; ccdsid "CCDS48155.1" ; exon_id "ENSE00003847550.1" ; exon_number 1 ; gene_id "LRCH2--TRMT1P1^LRCH2^ENSG00000130224.15" ; gene_name LRCH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022233.4" ; havana_transcript "OTTHUMT00000057971.4" ; hgnc_id "HGNC:29292" ; level 2 ; orig_coord_info "chrX,115233693,115234041,-" ; protein_id "ENSP00000325091.8" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "LRCH2--TRMT1P1^ENST00000317135.13" ; transcript_name "LRCH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
LRCH2--TRMT1P1 HAVANA mRNA 1001 19783 . + . FI_gene_label "LRCH2^ENSG00000130224.15" ; ID "LRCH2--TRMT1P1^ENST00000317135.13" ; Parent "LRCH2--TRMT1P1^LRCH2^ENSG00000130224.15" ; ccdsid "CCDS48155.1" ; exon_id "ENSE00003847550.1" ; exon_number 1 ; gene_id "LRCH2--TRMT1P1^LRCH2^ENSG00000130224.15" ; gene_name LRCH2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000022233.4" ; havana_transcript "OTTHUMT00000057971.4" ; hgnc_id "HGNC:29292" ; level 2 ; orig_coord_info "chrX,115233693,115234041,-" ; protein_id "ENSP00000325091.8" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "LRCH2--TRMT1P1^ENST00000317135.13" ; transcript_name "LRCH2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MED14--FTH1P19 HAVANA gene 1317 35401 . + . FI_gene_label "MED14^ENSG00000180182.11" ; ID "MED14--FTH1P19^MED14^ENSG00000180182.11" ; ccdsid "CCDS14254.1" ; exon_id "ENSE00001299237.3" ; exon_number 1 ; gene_id "MED14--FTH1P19^MED14^ENSG00000180182.11" ; gene_name MED14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024107.2" ; havana_transcript "OTTHUMT00000060692.2" ; hgnc_id "HGNC:2370" ; level 2 ; orig_coord_info "chrX,40735198,40735412,-" ; protein_id "ENSP00000323720.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MED14--FTH1P19^ENST00000324817.6" ; transcript_name "MED14-201" ; transcript_support_level 1 ; transcript_type protein_coding
MED14--FTH1P19 HAVANA mRNA 1317 35401 . + . FI_gene_label "MED14^ENSG00000180182.11" ; ID "MED14--FTH1P19^ENST00000324817.6" ; Parent "MED14--FTH1P19^MED14^ENSG00000180182.11" ; ccdsid "CCDS14254.1" ; exon_id "ENSE00001299237.3" ; exon_number 1 ; gene_id "MED14--FTH1P19^MED14^ENSG00000180182.11" ; gene_name MED14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024107.2" ; havana_transcript "OTTHUMT00000060692.2" ; hgnc_id "HGNC:2370" ; level 2 ; orig_coord_info "chrX,40735198,40735412,-" ; protein_id "ENSP00000323720.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MED14--FTH1P19^ENST00000324817.6" ; transcript_name "MED14-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MED14--FTH1P27 HAVANA gene 1317 35401 . + . FI_gene_label "MED14^ENSG00000180182.11" ; ID "MED14--FTH1P27^MED14^ENSG00000180182.11" ; ccdsid "CCDS14254.1" ; exon_id "ENSE00001299237.3" ; exon_number 1 ; gene_id "MED14--FTH1P27^MED14^ENSG00000180182.11" ; gene_name MED14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024107.2" ; havana_transcript "OTTHUMT00000060692.2" ; hgnc_id "HGNC:2370" ; level 2 ; orig_coord_info "chrX,40735198,40735412,-" ; protein_id "ENSP00000323720.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MED14--FTH1P27^ENST00000324817.6" ; transcript_name "MED14-201" ; transcript_support_level 1 ; transcript_type protein_coding
MED14--FTH1P27 HAVANA mRNA 1317 35401 . + . FI_gene_label "MED14^ENSG00000180182.11" ; ID "MED14--FTH1P27^ENST00000324817.6" ; Parent "MED14--FTH1P27^MED14^ENSG00000180182.11" ; ccdsid "CCDS14254.1" ; exon_id "ENSE00001299237.3" ; exon_number 1 ; gene_id "MED14--FTH1P27^MED14^ENSG00000180182.11" ; gene_name MED14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024107.2" ; havana_transcript "OTTHUMT00000060692.2" ; hgnc_id "HGNC:2370" ; level 2 ; orig_coord_info "chrX,40735198,40735412,-" ; protein_id "ENSP00000323720.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MED14--FTH1P27^ENST00000324817.6" ; transcript_name "MED14-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MED14--PRRG1 HAVANA gene 1317 35401 . + . FI_gene_label "MED14^ENSG00000180182.11" ; ID "MED14--PRRG1^MED14^ENSG00000180182.11" ; ccdsid "CCDS14254.1" ; exon_id "ENSE00001299237.3" ; exon_number 1 ; gene_id "MED14--PRRG1^MED14^ENSG00000180182.11" ; gene_name MED14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024107.2" ; havana_transcript "OTTHUMT00000060692.2" ; hgnc_id "HGNC:2370" ; level 2 ; orig_coord_info "chrX,40735198,40735412,-" ; protein_id "ENSP00000323720.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MED14--PRRG1^ENST00000324817.6" ; transcript_name "MED14-201" ; transcript_support_level 1 ; transcript_type protein_coding
MED14--PRRG1 HAVANA mRNA 1317 35401 . + . FI_gene_label "MED14^ENSG00000180182.11" ; ID "MED14--PRRG1^ENST00000324817.6" ; Parent "MED14--PRRG1^MED14^ENSG00000180182.11" ; ccdsid "CCDS14254.1" ; exon_id "ENSE00001299237.3" ; exon_number 1 ; gene_id "MED14--PRRG1^MED14^ENSG00000180182.11" ; gene_name MED14 ; gene_type protein_coding ; havana_gene "OTTHUMG00000024107.2" ; havana_transcript "OTTHUMT00000060692.2" ; hgnc_id "HGNC:2370" ; level 2 ; orig_coord_info "chrX,40735198,40735412,-" ; protein_id "ENSP00000323720.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MED14--PRRG1^ENST00000324817.6" ; transcript_name "MED14-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MED14--PRRG1 HAVANA gene 38457 49543 . + . FI_gene_label "PRRG1^ENSG00000130962.18" ; ID "MED14--PRRG1^PRRG1^ENSG00000130962.18" ; ccdsid "CCDS14239.1" ; exon_id "ENSE00003481684.1" ; exon_number 2 ; gene_id "MED14--PRRG1^PRRG1^ENSG00000130962.18" ; gene_name PRRG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021360.3" ; havana_transcript "OTTHUMT00000056233.2" ; hgnc_id "HGNC:9469" ; level 2 ; orig_coord_info "chrX,37406250,37406259,+" ; protein_id "ENSP00000367894.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MED14--PRRG1^ENST00000378628.9" ; transcript_name "PRRG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
MED14--PRRG1 HAVANA mRNA 38457 49543 . + . FI_gene_label "PRRG1^ENSG00000130962.18" ; ID "MED14--PRRG1^ENST00000378628.9" ; Parent "MED14--PRRG1^PRRG1^ENSG00000130962.18" ; ccdsid "CCDS14239.1" ; exon_id "ENSE00003481684.1" ; exon_number 2 ; gene_id "MED14--PRRG1^PRRG1^ENSG00000130962.18" ; gene_name PRRG1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000021360.3" ; havana_transcript "OTTHUMT00000056233.2" ; hgnc_id "HGNC:9469" ; level 2 ; orig_coord_info "chrX,37406250,37406259,+" ; protein_id "ENSP00000367894.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MED14--PRRG1^ENST00000378628.9" ; transcript_name "PRRG1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MGAT4A--SNRNP200 HAVANA gene 3124 24229 . + . FI_gene_label "MGAT4A^ENSG00000071073.13" ; ID "MGAT4A--SNRNP200^MGAT4A^ENSG00000071073.13" ; ccdsid "CCDS2036.1" ; exon_id "ENSE00001515488.1" ; exon_number 1 ; gene_id "MGAT4A--SNRNP200^MGAT4A^ENSG00000071073.13" ; gene_name MGAT4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000130563.6" ; havana_transcript "OTTHUMT00000252988.2" ; hgnc_id "HGNC:7047" ; level 2 ; orig_coord_info "chr2,98726239,98726332,-" ; protein_id "ENSP00000264968.2" ; tag basic appris_principal_1 CCDS ; transcript_id "MGAT4A--SNRNP200^ENST00000264968.7" ; transcript_name "MGAT4A-201" ; transcript_support_level 1 ; transcript_type protein_coding
MGAT4A--SNRNP200 HAVANA mRNA 3124 24229 . + . FI_gene_label "MGAT4A^ENSG00000071073.13" ; ID "MGAT4A--SNRNP200^ENST00000264968.7" ; Parent "MGAT4A--SNRNP200^MGAT4A^ENSG00000071073.13" ; ccdsid "CCDS2036.1" ; exon_id "ENSE00001515488.1" ; exon_number 1 ; gene_id "MGAT4A--SNRNP200^MGAT4A^ENSG00000071073.13" ; gene_name MGAT4A ; gene_type protein_coding ; havana_gene "OTTHUMG00000130563.6" ; havana_transcript "OTTHUMT00000252988.2" ; hgnc_id "HGNC:7047" ; level 2 ; orig_coord_info "chr2,98726239,98726332,-" ; protein_id "ENSP00000264968.2" ; tag basic appris_principal_1 CCDS ; transcript_id "MGAT4A--SNRNP200^ENST00000264968.7" ; transcript_name "MGAT4A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MGAT4A--SNRNP200 HAVANA gene 29463 57746 . + . FI_gene_label "SNRNP200^ENSG00000144028.15" ; ID "MGAT4A--SNRNP200^SNRNP200^ENSG00000144028.15" ; ccdsid "CCDS2020.1" ; exon_id "ENSE00001859556.2" ; exon_number 1 ; gene_id "MGAT4A--SNRNP200^SNRNP200^ENSG00000144028.15" ; gene_name SNRNP200 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130455.7" ; havana_transcript "OTTHUMT00000252846.4" ; hgnc_id "HGNC:30859" ; level 2 ; orig_coord_info "chr2,96305393,96305437,-" ; protein_id "ENSP00000317123.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MGAT4A--SNRNP200^ENST00000323853.10" ; transcript_name "SNRNP200-201" ; transcript_support_level 1 ; transcript_type protein_coding
MGAT4A--SNRNP200 HAVANA mRNA 29463 57746 . + . FI_gene_label "SNRNP200^ENSG00000144028.15" ; ID "MGAT4A--SNRNP200^ENST00000323853.10" ; Parent "MGAT4A--SNRNP200^SNRNP200^ENSG00000144028.15" ; ccdsid "CCDS2020.1" ; exon_id "ENSE00001859556.2" ; exon_number 1 ; gene_id "MGAT4A--SNRNP200^SNRNP200^ENSG00000144028.15" ; gene_name SNRNP200 ; gene_type protein_coding ; havana_gene "OTTHUMG00000130455.7" ; havana_transcript "OTTHUMT00000252846.4" ; hgnc_id "HGNC:30859" ; level 2 ; orig_coord_info "chr2,96305393,96305437,-" ; protein_id "ENSP00000317123.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "MGAT4A--SNRNP200^ENST00000323853.10" ; transcript_name "SNRNP200-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
MRPS21--APH1A HAVANA gene 7079 9457 . + . FI_gene_label "APH1A^ENSG00000117362.13" ; ID "MRPS21--APH1A^APH1A^ENSG00000117362.13" ; exon_id "ENSE00001627612.1" ; exon_number 1 ; gene_id "MRPS21--APH1A^APH1A^ENSG00000117362.13" ; gene_name APH1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000012545.4" ; havana_transcript "OTTHUMT00000095847.2" ; hgnc_id "HGNC:29509" ; level 2 ; orig_coord_info "chr1,150268698,150268810,-" ; protein_id "ENSP00000236017.5" ; tag mRNA_end_NF cds_end_NF ; transcript_id "MRPS21--APH1A^ENST00000236017.5" ; transcript_name "APH1A-201" ; transcript_support_level 2 ; transcript_type protein_coding
MRPS21--APH1A HAVANA mRNA 7079 9457 . + . FI_gene_label "APH1A^ENSG00000117362.13" ; ID "MRPS21--APH1A^ENST00000236017.5" ; Parent "MRPS21--APH1A^APH1A^ENSG00000117362.13" ; exon_id "ENSE00001627612.1" ; exon_number 1 ; gene_id "MRPS21--APH1A^APH1A^ENSG00000117362.13" ; gene_name APH1A ; gene_type protein_coding ; havana_gene "OTTHUMG00000012545.4" ; havana_transcript "OTTHUMT00000095847.2" ; hgnc_id "HGNC:29509" ; level 2 ; orig_coord_info "chr1,150268698,150268810,-" ; protein_id "ENSP00000236017.5" ; tag mRNA_end_NF cds_end_NF ; transcript_id "MRPS21--APH1A^ENST00000236017.5" ; transcript_name "APH1A-201" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
MRPS21--APH1A HAVANA gene 1060 3521 . + . FI_gene_label "MRPS21^ENSG00000266472.6" ; ID "MRPS21--APH1A^MRPS21^ENSG00000266472.6" ; ccdsid "CCDS950.1" ; exon_id "ENSE00002689084.2" ; exon_number 1 ; gene_id "MRPS21--APH1A^MRPS21^ENSG00000266472.6" ; gene_name MRPS21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012544.4" ; havana_transcript "OTTHUMT00000035813.2" ; hgnc_id "HGNC:14046" ; level 2 ; orig_coord_info "chr1,150294367,150294449,+" ; protein_id "ENSP00000461930.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "MRPS21--APH1A^ENST00000581066.2" ; transcript_name "MRPS21-201" ; transcript_support_level 1 ; transcript_type protein_coding
MRPS21--APH1A HAVANA mRNA 1060 3521 . + . FI_gene_label "MRPS21^ENSG00000266472.6" ; ID "MRPS21--APH1A^ENST00000581066.2" ; Parent "MRPS21--APH1A^MRPS21^ENSG00000266472.6" ; ccdsid "CCDS950.1" ; exon_id "ENSE00002689084.2" ; exon_number 1 ; gene_id "MRPS21--APH1A^MRPS21^ENSG00000266472.6" ; gene_name MRPS21 ; gene_type protein_coding ; havana_gene "OTTHUMG00000012544.4" ; havana_transcript "OTTHUMT00000035813.2" ; hgnc_id "HGNC:14046" ; level 2 ; orig_coord_info "chr1,150294367,150294449,+" ; protein_id "ENSP00000461930.1" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "MRPS21--APH1A^ENST00000581066.2" ; transcript_name "MRPS21-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ORC2--AC068196.1 HAVANA gene 1021 22172 . + . FI_gene_label "ORC2^ENSG00000115942.9" ; ID "ORC2--AC068196.1^ORC2^ENSG00000115942.9" ; ccdsid "CCDS2334.1" ; exon_id "ENSE00000803327.1" ; exon_number 3 ; gene_id "ORC2--AC068196.1^ORC2^ENSG00000115942.9" ; gene_name ORC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132783.25" ; havana_transcript "OTTHUMT00000256191.3" ; hgnc_id "HGNC:8488" ; level 2 ; orig_coord_info "chr2,200958030,200958123,-" ; protein_id "ENSP00000234296.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ORC2--AC068196.1^ENST00000234296.7" ; transcript_name "ORC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
ORC2--AC068196.1 HAVANA mRNA 1021 22172 . + . FI_gene_label "ORC2^ENSG00000115942.9" ; ID "ORC2--AC068196.1^ENST00000234296.7" ; Parent "ORC2--AC068196.1^ORC2^ENSG00000115942.9" ; ccdsid "CCDS2334.1" ; exon_id "ENSE00000803327.1" ; exon_number 3 ; gene_id "ORC2--AC068196.1^ORC2^ENSG00000115942.9" ; gene_name ORC2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132783.25" ; havana_transcript "OTTHUMT00000256191.3" ; hgnc_id "HGNC:8488" ; level 2 ; orig_coord_info "chr2,200958030,200958123,-" ; protein_id "ENSP00000234296.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ORC2--AC068196.1^ENST00000234296.7" ; transcript_name "ORC2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PARP8--LINC00276 HAVANA gene 1739 37009 . + . FI_gene_label "PARP8^ENSG00000151883.19" ; ID "PARP8--LINC00276^PARP8^ENSG00000151883.19" ; ccdsid "CCDS3954.1" ; exon_id "ENSE00002062768.2" ; exon_number 1 ; gene_id "PARP8--LINC00276^PARP8^ENSG00000151883.19" ; gene_name PARP8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000096969.10" ; havana_transcript "OTTHUMT00000214035.4" ; hgnc_id "HGNC:26124" ; level 2 ; orig_coord_info "chr5,50667096,50667186,+" ; protein_id "ENSP00000281631.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PARP8--LINC00276^ENST00000281631.10" ; transcript_name "PARP8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PARP8--LINC00276 HAVANA mRNA 1739 37009 . + . FI_gene_label "PARP8^ENSG00000151883.19" ; ID "PARP8--LINC00276^ENST00000281631.10" ; Parent "PARP8--LINC00276^PARP8^ENSG00000151883.19" ; ccdsid "CCDS3954.1" ; exon_id "ENSE00002062768.2" ; exon_number 1 ; gene_id "PARP8--LINC00276^PARP8^ENSG00000151883.19" ; gene_name PARP8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000096969.10" ; havana_transcript "OTTHUMT00000214035.4" ; hgnc_id "HGNC:26124" ; level 2 ; orig_coord_info "chr5,50667096,50667186,+" ; protein_id "ENSP00000281631.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PARP8--LINC00276^ENST00000281631.10" ; transcript_name "PARP8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA10 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA10^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA10^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA10^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGA10 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA10^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGA10^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA10^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA10^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA10 HAVANA gene 8259 17712 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA1--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGA10 HAVANA mRNA 8259 17712 . + . FI_gene_label "PCDHGA10^ENSG00000253846.2" ; ID "PCDHGA1--PCDHGA10^ENST00000398610.2" ; Parent "PCDHGA1--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; ccdsid "CCDS47292.1" ; exon_id "ENSE00001792208.1" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA10^PCDHGA10^ENSG00000253846.2" ; gene_name PCDHGA10 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163688.2" ; havana_transcript "OTTHUMT00000374747.1" ; hgnc_id "HGNC:8697" ; level 2 ; orig_coord_info "chr5,141413176,141415611,+" ; protein_id "ENSP00000381611.2" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA10^ENST00000398610.2" ; transcript_name "PCDHGA10-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA11 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA11^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA11^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA11^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGA11 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA11^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGA11^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA11^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA11^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA11 HAVANA gene 8074 16879 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA1--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGA11 HAVANA mRNA 8074 16879 . + . FI_gene_label "PCDHGA11^ENSG00000253873.6" ; ID "PCDHGA1--PCDHGA11^ENST00000398587.7" ; Parent "PCDHGA1--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; ccdsid "CCDS47294.1" ; exon_id "ENSE00001533810.3" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA11^PCDHGA11^ENSG00000253873.6" ; gene_name PCDHGA11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164055.3" ; havana_transcript "OTTHUMT00000376974.3" ; hgnc_id "HGNC:8698" ; level 2 ; orig_coord_info "chr5,141421228,141423660,+" ; protein_id "ENSP00000381589.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA11^ENST00000398587.7" ; transcript_name "PCDHGA11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA12 HAVANA gene 8070 15962 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA1--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGA12 HAVANA mRNA 8070 15962 . + . FI_gene_label "PCDHGA12^ENSG00000253159.3" ; ID "PCDHGA1--PCDHGA12^ENST00000252085.4" ; Parent "PCDHGA1--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; ccdsid "CCDS4260.1" ; exon_id "ENSE00000814269.5" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA12^PCDHGA12^ENSG00000253159.3" ; gene_name PCDHGA12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129611.6" ; havana_transcript "OTTHUMT00000251806.3" ; hgnc_id "HGNC:8699" ; level 2 ; orig_coord_info "chr5,141430760,141433183,+" ; protein_id "ENSP00000252085.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA12^ENST00000252085.4" ; transcript_name "PCDHGA12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA12 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA12^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA12^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA12^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGA12 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA12^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGA12^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA12^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA12^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA8 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA8^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA8^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA8^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGA8 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA8^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGA8^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA8^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA8^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA8 HAVANA gene 10546 19726 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA1--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGA8 HAVANA mRNA 10546 19726 . + . FI_gene_label "PCDHGA8^ENSG00000253767.3" ; ID "PCDHGA1--PCDHGA8^ENST00000398604.3" ; Parent "PCDHGA1--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; ccdsid "CCDS47291.1" ; exon_id "ENSE00001533882.3" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA8^PCDHGA8^ENSG00000253767.3" ; gene_name PCDHGA8 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164053.2" ; havana_transcript "OTTHUMT00000376972.1" ; hgnc_id "HGNC:8706" ; level 2 ; orig_coord_info "chr5,141392814,141395237,+" ; protein_id "ENSP00000381605.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA8^ENST00000398604.3" ; transcript_name "PCDHGA8-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA9 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA9^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA9^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA9^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGA9 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGA9^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGA9^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA9^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGA9^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGA9 HAVANA gene 8091 15818 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA1--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGA9 HAVANA mRNA 8091 15818 . + . FI_gene_label "PCDHGA9^ENSG00000261934.2" ; ID "PCDHGA1--PCDHGA9^ENST00000573521.1" ; Parent "PCDHGA1--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; ccdsid "CCDS58981.1" ; exon_id "ENSE00002639131.1" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGA9^PCDHGA9^ENSG00000261934.2" ; gene_name PCDHGA9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000177473.2" ; havana_transcript "OTTHUMT00000437105.1" ; hgnc_id "HGNC:8707" ; level 2 ; orig_coord_info "chr5,141402953,141405376,+" ; protein_id "ENSP00000460274.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGA9^ENST00000573521.1" ; transcript_name "PCDHGA9-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGB6 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGB6^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGB6^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGB6^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGB6 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGB6^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGB6^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGB6^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGB6^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGB6 HAVANA gene 8252 17851 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA1--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGB6 HAVANA mRNA 8252 17851 . + . FI_gene_label "PCDHGB6^ENSG00000253305.2" ; ID "PCDHGA1--PCDHGB6^ENST00000520790.1" ; Parent "PCDHGA1--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; ccdsid "CCDS54929.1" ; exon_id "ENSE00002122685.1" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGB6^PCDHGB6^ENSG00000253305.2" ; gene_name PCDHGB6 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163687.2" ; havana_transcript "OTTHUMT00000374746.1" ; hgnc_id "HGNC:8713" ; level 2 ; orig_coord_info "chr5,141408203,141410620,+" ; protein_id "ENSP00000428603.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGB6^ENST00000520790.1" ; transcript_name "PCDHGB6-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGB7 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGB7^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGB7^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGB7^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGB7 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGB7^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGB7^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGB7^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGB7^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGB7 HAVANA gene 8102 16031 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA1--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGB7 HAVANA mRNA 8102 16031 . + . FI_gene_label "PCDHGB7^ENSG00000254122.3" ; ID "PCDHGA1--PCDHGB7^ENST00000398594.4" ; Parent "PCDHGA1--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; ccdsid "CCDS47293.1" ; exon_id "ENSE00001533845.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGB7^PCDHGB7^ENSG00000254122.3" ; gene_name PCDHGB7 ; gene_type protein_coding ; havana_gene "OTTHUMG00000164054.2" ; havana_transcript "OTTHUMT00000376973.2" ; hgnc_id "HGNC:8714" ; level 2 ; orig_coord_info "chr5,141417860,141420274,+" ; protein_id "ENSP00000381594.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGB7^ENST00000398594.4" ; transcript_name "PCDHGB7-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGC3 HAVANA gene 8089 18275 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA1--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGC3 HAVANA mRNA 8089 18275 . + . FI_gene_label "PCDHGC3^ENSG00000240184.7" ; ID "PCDHGA1--PCDHGC3^ENST00000308177.5" ; Parent "PCDHGA1--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; ccdsid "CCDS4261.1" ; exon_id "ENSE00001199459.7" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC3^PCDHGC3^ENSG00000240184.7" ; gene_name PCDHGC3 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129613.8" ; havana_transcript "OTTHUMT00000251808.5" ; hgnc_id "HGNC:8716" ; level 2 ; orig_coord_info "chr5,141476117,141478546,+" ; protein_id "ENSP00000312070.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGC3^ENST00000308177.5" ; transcript_name "PCDHGC3-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGC3 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGC3^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC3^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGC3^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGC3 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGC3^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGC3^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC3^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGC3^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGC4 HAVANA gene 8247 16043 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA1--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGC4 HAVANA mRNA 8247 16043 . + . FI_gene_label "PCDHGC4^ENSG00000242419.5" ; ID "PCDHGA1--PCDHGC4^ENST00000306593.1" ; Parent "PCDHGA1--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; ccdsid "CCDS4262.1" ; exon_id "ENSE00001162305.2" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC4^PCDHGC4^ENSG00000242419.5" ; gene_name PCDHGC4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129625.4" ; havana_transcript "OTTHUMT00000251820.2" ; hgnc_id "HGNC:8717" ; level 2 ; orig_coord_info "chr5,141485174,141487615,+" ; protein_id "ENSP00000306918.1" ; tag basic appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGC4^ENST00000306593.1" ; transcript_name "PCDHGC4-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGC4 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGC4^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC4^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGC4^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGC4 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGC4^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGC4^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC4^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGC4^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGC5 HAVANA gene 8070 16095 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA1--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
PCDHGA1--PCDHGC5 HAVANA mRNA 8070 16095 . + . FI_gene_label "PCDHGC5^ENSG00000240764.4" ; ID "PCDHGA1--PCDHGC5^ENST00000252087.3" ; Parent "PCDHGA1--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; ccdsid "CCDS4263.1" ; exon_id "ENSE00000766474.3" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC5^PCDHGC5^ENSG00000240764.4" ; gene_name PCDHGC5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129624.2" ; havana_transcript "OTTHUMT00000251819.2" ; hgnc_id "HGNC:8718" ; level 2 ; orig_coord_info "chr5,141489241,141491700,+" ; protein_id "ENSP00000252087.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PCDHGA1--PCDHGC5^ENST00000252087.3" ; transcript_name "PCDHGC5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PCDHGA1--PCDHGC5 HAVANA gene 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGC5^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC5^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGC5^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
PCDHGA1--PCDHGC5 HAVANA mRNA 1001 5069 . + . FI_gene_label "PCDHGA1^ENSG00000204956.5" ; ID "PCDHGA1--PCDHGC5^ENST00000378105.4" ; Parent "PCDHGA1--PCDHGC5^PCDHGA1^ENSG00000204956.5" ; exon_id "ENSE00001476268.4" ; exon_number 1 ; gene_id "PCDHGA1--PCDHGC5^PCDHGA1^ENSG00000204956.5" ; gene_name PCDHGA1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000163678.4" ; havana_transcript "OTTHUMT00000476679.2" ; hgnc_id "HGNC:8696" ; level 2 ; orig_coord_info "chr5,141330685,141333153,+" ; protein_id "ENSP00000367345.3" ; tag RNA_Seq_supported_partial basic ; transcript_id "PCDHGA1--PCDHGC5^ENST00000378105.4" ; transcript_name "PCDHGA1-201" ; transcript_support_level NA ; transcript_type protein_coding
L1 and L2 created:
PLCL1--GULP1 HAVANA gene 24604 49288 . + . FI_gene_label "GULP1^ENSG00000144366.16" ; ID "PLCL1--GULP1^GULP1^ENSG00000144366.16" ; ccdsid "CCDS2295.1" ; exon_id "ENSE00003593100.1" ; exon_number 3 ; gene_id "PLCL1--GULP1^GULP1^ENSG00000144366.16" ; gene_name GULP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132647.5" ; havana_transcript "OTTHUMT00000255898.2" ; hgnc_id "HGNC:18649" ; level 2 ; orig_coord_info "chr2,188477703,188477730,+" ; protein_id "ENSP00000352047.3" ; tag basic appris_principal_4 CCDS ; transcript_id "PLCL1--GULP1^ENST00000359135.7" ; transcript_name "GULP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLCL1--GULP1 HAVANA mRNA 24604 49288 . + . FI_gene_label "GULP1^ENSG00000144366.16" ; ID "PLCL1--GULP1^ENST00000359135.7" ; Parent "PLCL1--GULP1^GULP1^ENSG00000144366.16" ; ccdsid "CCDS2295.1" ; exon_id "ENSE00003593100.1" ; exon_number 3 ; gene_id "PLCL1--GULP1^GULP1^ENSG00000144366.16" ; gene_name GULP1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132647.5" ; havana_transcript "OTTHUMT00000255898.2" ; hgnc_id "HGNC:18649" ; level 2 ; orig_coord_info "chr2,188477703,188477730,+" ; protein_id "ENSP00000352047.3" ; tag basic appris_principal_4 CCDS ; transcript_id "PLCL1--GULP1^ENST00000359135.7" ; transcript_name "GULP1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PLCL1--GULP1 HAVANA gene 1001 14827 . + . FI_gene_label "PLCL1^ENSG00000115896.16" ; ID "PLCL1--GULP1^PLCL1^ENSG00000115896.16" ; ccdsid "CCDS2326.2" ; exon_id "ENSE00003847923.1" ; exon_number 1 ; gene_id "PLCL1--GULP1^PLCL1^ENSG00000115896.16" ; gene_name PLCL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132750.9" ; havana_transcript "OTTHUMT00000340210.2" ; hgnc_id "HGNC:9063" ; level 2 ; orig_coord_info "chr2,197805100,197805339,+" ; protein_id "ENSP00000402861.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLCL1--GULP1^ENST00000428675.6" ; transcript_name "PLCL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
PLCL1--GULP1 HAVANA mRNA 1001 14827 . + . FI_gene_label "PLCL1^ENSG00000115896.16" ; ID "PLCL1--GULP1^ENST00000428675.6" ; Parent "PLCL1--GULP1^PLCL1^ENSG00000115896.16" ; ccdsid "CCDS2326.2" ; exon_id "ENSE00003847923.1" ; exon_number 1 ; gene_id "PLCL1--GULP1^PLCL1^ENSG00000115896.16" ; gene_name PLCL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132750.9" ; havana_transcript "OTTHUMT00000340210.2" ; hgnc_id "HGNC:9063" ; level 2 ; orig_coord_info "chr2,197805100,197805339,+" ; protein_id "ENSP00000402861.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PLCL1--GULP1^ENST00000428675.6" ; transcript_name "PLCL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PMS2P6--CCDC146 HAVANA gene 9058 29425 . + . FI_gene_label "CCDC146^ENSG00000135205.15" ; ID "PMS2P6--CCDC146^CCDC146^ENSG00000135205.15" ; ccdsid "CCDS34671.1" ; exon_id "ENSE00003536120.1" ; exon_number 2 ; gene_id "PMS2P6--CCDC146^CCDC146^ENSG00000135205.15" ; gene_name CCDC146 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162595.3" ; havana_transcript "OTTHUMT00000341449.2" ; hgnc_id "HGNC:29296" ; level 2 ; orig_coord_info "chr7,77167669,77167824,+" ; protein_id "ENSP00000285871.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PMS2P6--CCDC146^ENST00000285871.5" ; transcript_name "CCDC146-201" ; transcript_support_level 1 ; transcript_type protein_coding
PMS2P6--CCDC146 HAVANA mRNA 9058 29425 . + . FI_gene_label "CCDC146^ENSG00000135205.15" ; ID "PMS2P6--CCDC146^ENST00000285871.5" ; Parent "PMS2P6--CCDC146^CCDC146^ENSG00000135205.15" ; ccdsid "CCDS34671.1" ; exon_id "ENSE00003536120.1" ; exon_number 2 ; gene_id "PMS2P6--CCDC146^CCDC146^ENSG00000135205.15" ; gene_name CCDC146 ; gene_type protein_coding ; havana_gene "OTTHUMG00000162595.3" ; havana_transcript "OTTHUMT00000341449.2" ; hgnc_id "HGNC:29296" ; level 2 ; orig_coord_info "chr7,77167669,77167824,+" ; protein_id "ENSP00000285871.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PMS2P6--CCDC146^ENST00000285871.5" ; transcript_name "CCDC146-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPP1R13B--ZNF138 HAVANA gene 1001 28286 . + . FI_gene_label "PPP1R13B^ENSG00000088808.18" ; ID "PPP1R13B--ZNF138^PPP1R13B^ENSG00000088808.18" ; ccdsid "CCDS41997.1" ; exon_id "ENSE00002700292.2" ; exon_number 1 ; gene_id "PPP1R13B--ZNF138^PPP1R13B^ENSG00000088808.18" ; gene_name PPP1R13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000171647.5" ; havana_transcript "OTTHUMT00000414591.2" ; hgnc_id "HGNC:14950" ; level 2 ; orig_coord_info "chr14,103847299,103847307,-" ; protein_id "ENSP00000202556.9" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPP1R13B--ZNF138^ENST00000202556.14" ; transcript_name "PPP1R13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPP1R13B--ZNF138 HAVANA mRNA 1001 28286 . + . FI_gene_label "PPP1R13B^ENSG00000088808.18" ; ID "PPP1R13B--ZNF138^ENST00000202556.14" ; Parent "PPP1R13B--ZNF138^PPP1R13B^ENSG00000088808.18" ; ccdsid "CCDS41997.1" ; exon_id "ENSE00002700292.2" ; exon_number 1 ; gene_id "PPP1R13B--ZNF138^PPP1R13B^ENSG00000088808.18" ; gene_name PPP1R13B ; gene_type protein_coding ; havana_gene "OTTHUMG00000171647.5" ; havana_transcript "OTTHUMT00000414591.2" ; hgnc_id "HGNC:14950" ; level 2 ; orig_coord_info "chr14,103847299,103847307,-" ; protein_id "ENSP00000202556.9" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPP1R13B--ZNF138^ENST00000202556.14" ; transcript_name "PPP1R13B-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPP1R13B--ZNF138 HAVANA gene 31327 37806 . + . FI_gene_label "ZNF138^ENSG00000197008.10" ; ID "PPP1R13B--ZNF138^ZNF138^ENSG00000197008.10" ; ccdsid "CCDS64660.1" ; exon_id "ENSE00003600414.1" ; exon_number 1 ; gene_id "PPP1R13B--ZNF138^ZNF138^ENSG00000197008.10" ; gene_name ZNF138 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156603.4" ; havana_transcript "OTTHUMT00000344746.3" ; hgnc_id "HGNC:12922" ; level 2 ; orig_coord_info "chr7,64794569,64794571,+" ; protein_id "ENSP00000303533.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PPP1R13B--ZNF138^ENST00000307355.12" ; transcript_name "ZNF138-201" ; transcript_support_level 4 ; transcript_type protein_coding
PPP1R13B--ZNF138 HAVANA mRNA 31327 37806 . + . FI_gene_label "ZNF138^ENSG00000197008.10" ; ID "PPP1R13B--ZNF138^ENST00000307355.12" ; Parent "PPP1R13B--ZNF138^ZNF138^ENSG00000197008.10" ; ccdsid "CCDS64660.1" ; exon_id "ENSE00003600414.1" ; exon_number 1 ; gene_id "PPP1R13B--ZNF138^ZNF138^ENSG00000197008.10" ; gene_name ZNF138 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156603.4" ; havana_transcript "OTTHUMT00000344746.3" ; hgnc_id "HGNC:12922" ; level 2 ; orig_coord_info "chr7,64794569,64794571,+" ; protein_id "ENSP00000303533.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "PPP1R13B--ZNF138^ENST00000307355.12" ; transcript_name "ZNF138-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
PPP2R2B--GLS HAVANA gene 36625 62966 . + . FI_gene_label "GLS^ENSG00000115419.13" ; ID "PPP2R2B--GLS^GLS^ENSG00000115419.13" ; ccdsid "CCDS2308.1" ; exon_id "ENSE00001874665.2" ; exon_number 1 ; gene_id "PPP2R2B--GLS^GLS^ENSG00000115419.13" ; gene_name GLS ; gene_type protein_coding ; havana_gene "OTTHUMG00000132701.5" ; havana_transcript "OTTHUMT00000255999.3" ; hgnc_id "HGNC:4331" ; level 2 ; orig_coord_info "chr2,190881085,190881470,+" ; protein_id "ENSP00000317379.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPP2R2B--GLS^ENST00000320717.8" ; transcript_name "GLS-201" ; transcript_support_level 1 ; transcript_type protein_coding
PPP2R2B--GLS HAVANA mRNA 36625 62966 . + . FI_gene_label "GLS^ENSG00000115419.13" ; ID "PPP2R2B--GLS^ENST00000320717.8" ; Parent "PPP2R2B--GLS^GLS^ENSG00000115419.13" ; ccdsid "CCDS2308.1" ; exon_id "ENSE00001874665.2" ; exon_number 1 ; gene_id "PPP2R2B--GLS^GLS^ENSG00000115419.13" ; gene_name GLS ; gene_type protein_coding ; havana_gene "OTTHUMG00000132701.5" ; havana_transcript "OTTHUMT00000255999.3" ; hgnc_id "HGNC:4331" ; level 2 ; orig_coord_info "chr2,190881085,190881470,+" ; protein_id "ENSP00000317379.3" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "PPP2R2B--GLS^ENST00000320717.8" ; transcript_name "GLS-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
PPP2R2B--GLS HAVANA gene 3689 24855 . + . FI_gene_label "PPP2R2B^ENSG00000156475.19" ; ID "PPP2R2B--GLS^PPP2R2B^ENSG00000156475.19" ; ccdsid "CCDS4283.1" ; exon_id "ENSE00001760478.1" ; exon_number 1 ; gene_id "PPP2R2B--GLS^PPP2R2B^ENSG00000156475.19" ; gene_name PPP2R2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000163381.10" ; havana_transcript "OTTHUMT00000251894.1" ; hgnc_id "HGNC:9305" ; level 2 ; orig_coord_info "chr5,147055665,147055743,-" ; protein_id "ENSP00000336591.6" ; tag not_organism_supported basic CCDS ; transcript_id "PPP2R2B--GLS^ENST00000336640.10" ; transcript_name "PPP2R2B-201" ; transcript_support_level 5 ; transcript_type protein_coding
PPP2R2B--GLS HAVANA mRNA 3689 24855 . + . FI_gene_label "PPP2R2B^ENSG00000156475.19" ; ID "PPP2R2B--GLS^ENST00000336640.10" ; Parent "PPP2R2B--GLS^PPP2R2B^ENSG00000156475.19" ; ccdsid "CCDS4283.1" ; exon_id "ENSE00001760478.1" ; exon_number 1 ; gene_id "PPP2R2B--GLS^PPP2R2B^ENSG00000156475.19" ; gene_name PPP2R2B ; gene_type protein_coding ; havana_gene "OTTHUMG00000163381.10" ; havana_transcript "OTTHUMT00000251894.1" ; hgnc_id "HGNC:9305" ; level 2 ; orig_coord_info "chr5,147055665,147055743,-" ; protein_id "ENSP00000336591.6" ; tag not_organism_supported basic CCDS ; transcript_id "PPP2R2B--GLS^ENST00000336640.10" ; transcript_name "PPP2R2B-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
PTPN20--BMS1P7 ENSEMBL gene 1043 20316 . + . FI_gene_label "PTPN20^ENSG00000204179.10" ; ID "PTPN20--BMS1P7^PTPN20^ENSG00000204179.10" ; ccdsid "CCDS73114.1" ; exon_id "ENSE00003719491.1" ; exon_number 4 ; gene_id "PTPN20--BMS1P7^PTPN20^ENSG00000204179.10" ; gene_name PTPN20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018094.10" ; hgnc_id "HGNC:23423" ; level 3 ; orig_coord_info "chr10,46946579,46946675,+" ; protein_id "ENSP00000363335.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "PTPN20--BMS1P7^ENST00000374218.6" ; transcript_name "PTPN20-201" ; transcript_support_level 5 ; transcript_type protein_coding
PTPN20--BMS1P7 ENSEMBL mRNA 1043 20316 . + . FI_gene_label "PTPN20^ENSG00000204179.10" ; ID "PTPN20--BMS1P7^ENST00000374218.6" ; Parent "PTPN20--BMS1P7^PTPN20^ENSG00000204179.10" ; ccdsid "CCDS73114.1" ; exon_id "ENSE00003719491.1" ; exon_number 4 ; gene_id "PTPN20--BMS1P7^PTPN20^ENSG00000204179.10" ; gene_name PTPN20 ; gene_type protein_coding ; havana_gene "OTTHUMG00000018094.10" ; hgnc_id "HGNC:23423" ; level 3 ; orig_coord_info "chr10,46946579,46946675,+" ; protein_id "ENSP00000363335.2" ; tag basic appris_alternative_2 CCDS ; transcript_id "PTPN20--BMS1P7^ENST00000374218.6" ; transcript_name "PTPN20-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
R3HDM1--RNF144A HAVANA gene 1059 34281 . + . FI_gene_label "R3HDM1^ENSG00000048991.16" ; ID "R3HDM1--RNF144A^R3HDM1^ENSG00000048991.16" ; ccdsid "CCDS2177.1" ; exon_id "ENSE00001321432.3" ; exon_number 3 ; gene_id "R3HDM1--RNF144A^R3HDM1^ENSG00000048991.16" ; gene_name R3HDM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131740.11" ; havana_transcript "OTTHUMT00000254659.1" ; hgnc_id "HGNC:9757" ; level 2 ; orig_coord_info "chr2,135604846,135605016,+" ; protein_id "ENSP00000264160.4" ; tag basic appris_principal_4 CCDS ; transcript_id "R3HDM1--RNF144A^ENST00000264160.8" ; transcript_name "R3HDM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
R3HDM1--RNF144A HAVANA mRNA 1059 34281 . + . FI_gene_label "R3HDM1^ENSG00000048991.16" ; ID "R3HDM1--RNF144A^ENST00000264160.8" ; Parent "R3HDM1--RNF144A^R3HDM1^ENSG00000048991.16" ; ccdsid "CCDS2177.1" ; exon_id "ENSE00001321432.3" ; exon_number 3 ; gene_id "R3HDM1--RNF144A^R3HDM1^ENSG00000048991.16" ; gene_name R3HDM1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131740.11" ; havana_transcript "OTTHUMT00000254659.1" ; hgnc_id "HGNC:9757" ; level 2 ; orig_coord_info "chr2,135604846,135605016,+" ; protein_id "ENSP00000264160.4" ; tag basic appris_principal_4 CCDS ; transcript_id "R3HDM1--RNF144A^ENST00000264160.8" ; transcript_name "R3HDM1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
R3HDM1--RNF144A HAVANA gene 37282 52813 . + . FI_gene_label "RNF144A^ENSG00000151692.15" ; ID "R3HDM1--RNF144A^RNF144A^ENSG00000151692.15" ; ccdsid "CCDS1657.1" ; exon_id "ENSE00001281261.1" ; exon_number 3 ; gene_id "R3HDM1--RNF144A^RNF144A^ENSG00000151692.15" ; gene_name RNF144A ; gene_type protein_coding ; havana_gene "OTTHUMG00000090353.8" ; havana_transcript "OTTHUMT00000206725.4" ; hgnc_id "HGNC:20457" ; level 2 ; orig_coord_info "chr2,6996927,6997061,+" ; protein_id "ENSP00000321330.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "R3HDM1--RNF144A^ENST00000320892.11" ; transcript_name "RNF144A-201" ; transcript_support_level 1 ; transcript_type protein_coding
R3HDM1--RNF144A HAVANA mRNA 37282 52813 . + . FI_gene_label "RNF144A^ENSG00000151692.15" ; ID "R3HDM1--RNF144A^ENST00000320892.11" ; Parent "R3HDM1--RNF144A^RNF144A^ENSG00000151692.15" ; ccdsid "CCDS1657.1" ; exon_id "ENSE00001281261.1" ; exon_number 3 ; gene_id "R3HDM1--RNF144A^RNF144A^ENSG00000151692.15" ; gene_name RNF144A ; gene_type protein_coding ; havana_gene "OTTHUMG00000090353.8" ; havana_transcript "OTTHUMT00000206725.4" ; hgnc_id "HGNC:20457" ; level 2 ; orig_coord_info "chr2,6996927,6997061,+" ; protein_id "ENSP00000321330.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "R3HDM1--RNF144A^ENST00000320892.11" ; transcript_name "RNF144A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RMND5A--KDM3A HAVANA gene 1001 16368 . + . FI_gene_label "RMND5A^ENSG00000153561.13" ; ID "RMND5A--KDM3A^RMND5A^ENSG00000153561.13" ; ccdsid "CCDS1991.1" ; exon_id "ENSE00001653794.3" ; exon_number 1 ; gene_id "RMND5A--KDM3A^RMND5A^ENSG00000153561.13" ; gene_name RMND5A ; gene_type protein_coding ; havana_gene "OTTHUMG00000130262.4" ; havana_transcript "OTTHUMT00000252591.3" ; hgnc_id "HGNC:25850" ; level 2 ; orig_coord_info "chr2,86720668,86720809,+" ; protein_id "ENSP00000283632.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RMND5A--KDM3A^ENST00000283632.5" ; transcript_name "RMND5A-201" ; transcript_support_level 1 ; transcript_type protein_coding
RMND5A--KDM3A HAVANA mRNA 1001 16368 . + . FI_gene_label "RMND5A^ENSG00000153561.13" ; ID "RMND5A--KDM3A^ENST00000283632.5" ; Parent "RMND5A--KDM3A^RMND5A^ENSG00000153561.13" ; ccdsid "CCDS1991.1" ; exon_id "ENSE00001653794.3" ; exon_number 1 ; gene_id "RMND5A--KDM3A^RMND5A^ENSG00000153561.13" ; gene_name RMND5A ; gene_type protein_coding ; havana_gene "OTTHUMG00000130262.4" ; havana_transcript "OTTHUMT00000252591.3" ; hgnc_id "HGNC:25850" ; level 2 ; orig_coord_info "chr2,86720668,86720809,+" ; protein_id "ENSP00000283632.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RMND5A--KDM3A^ENST00000283632.5" ; transcript_name "RMND5A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RMND5A--KDM3A HAVANA gene 20093 49104 . + . FI_gene_label "KDM3A^ENSG00000115548.17" ; ID "RMND5A--KDM3A^KDM3A^ENSG00000115548.17" ; ccdsid "CCDS1990.1" ; exon_id "ENSE00003892294.1" ; exon_number 2 ; gene_id "RMND5A--KDM3A^KDM3A^ENSG00000115548.17" ; gene_name KDM3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000130204.8" ; havana_transcript "OTTHUMT00000504337.2" ; hgnc_id "HGNC:20815" ; level 2 ; orig_coord_info "chr2,86442048,86442233,+" ; protein_id "ENSP00000323659.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RMND5A--KDM3A^ENST00000312912.10" ; transcript_name "KDM3A-201" ; transcript_support_level 1 ; transcript_type protein_coding
RMND5A--KDM3A HAVANA mRNA 20093 49104 . + . FI_gene_label "KDM3A^ENSG00000115548.17" ; ID "RMND5A--KDM3A^ENST00000312912.10" ; Parent "RMND5A--KDM3A^KDM3A^ENSG00000115548.17" ; ccdsid "CCDS1990.1" ; exon_id "ENSE00003892294.1" ; exon_number 2 ; gene_id "RMND5A--KDM3A^KDM3A^ENSG00000115548.17" ; gene_name KDM3A ; gene_type protein_coding ; havana_gene "OTTHUMG00000130204.8" ; havana_transcript "OTTHUMT00000504337.2" ; hgnc_id "HGNC:20815" ; level 2 ; orig_coord_info "chr2,86442048,86442233,+" ; protein_id "ENSP00000323659.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RMND5A--KDM3A^ENST00000312912.10" ; transcript_name "KDM3A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RNF144A--AC068725.1 HAVANA gene 1001 16532 . + . FI_gene_label "RNF144A^ENSG00000151692.15" ; ID "RNF144A--AC068725.1^RNF144A^ENSG00000151692.15" ; ccdsid "CCDS1657.1" ; exon_id "ENSE00001281261.1" ; exon_number 3 ; gene_id "RNF144A--AC068725.1^RNF144A^ENSG00000151692.15" ; gene_name RNF144A ; gene_type protein_coding ; havana_gene "OTTHUMG00000090353.8" ; havana_transcript "OTTHUMT00000206725.4" ; hgnc_id "HGNC:20457" ; level 2 ; orig_coord_info "chr2,6996927,6997061,+" ; protein_id "ENSP00000321330.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF144A--AC068725.1^ENST00000320892.11" ; transcript_name "RNF144A-201" ; transcript_support_level 1 ; transcript_type protein_coding
RNF144A--AC068725.1 HAVANA mRNA 1001 16532 . + . FI_gene_label "RNF144A^ENSG00000151692.15" ; ID "RNF144A--AC068725.1^ENST00000320892.11" ; Parent "RNF144A--AC068725.1^RNF144A^ENSG00000151692.15" ; ccdsid "CCDS1657.1" ; exon_id "ENSE00001281261.1" ; exon_number 3 ; gene_id "RNF144A--AC068725.1^RNF144A^ENSG00000151692.15" ; gene_name RNF144A ; gene_type protein_coding ; havana_gene "OTTHUMG00000090353.8" ; havana_transcript "OTTHUMT00000206725.4" ; hgnc_id "HGNC:20457" ; level 2 ; orig_coord_info "chr2,6996927,6997061,+" ; protein_id "ENSP00000321330.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "RNF144A--AC068725.1^ENST00000320892.11" ; transcript_name "RNF144A-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ROCK2--ZNF385B HAVANA gene 2659 17782 . + . FI_gene_label "ROCK2^ENSG00000134318.14" ; ID "ROCK2--ZNF385B^ROCK2^ENSG00000134318.14" ; exon_id "ENSE00001637061.1" ; exon_number 1 ; gene_id "ROCK2--ZNF385B^ROCK2^ENSG00000134318.14" ; gene_name ROCK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149916.8" ; havana_transcript "OTTHUMT00000324132.1" ; hgnc_id "HGNC:10252" ; level 2 ; orig_coord_info "chr2,11343996,11344136,-" ; protein_id "ENSP00000261535.3" ; tag not_organism_supported ; transcript_id "ROCK2--ZNF385B^ENST00000261535.7" ; transcript_name "ROCK2-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
ROCK2--ZNF385B HAVANA mRNA 2659 17782 . + . FI_gene_label "ROCK2^ENSG00000134318.14" ; ID "ROCK2--ZNF385B^ENST00000261535.7" ; Parent "ROCK2--ZNF385B^ROCK2^ENSG00000134318.14" ; exon_id "ENSE00001637061.1" ; exon_number 1 ; gene_id "ROCK2--ZNF385B^ROCK2^ENSG00000134318.14" ; gene_name ROCK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000149916.8" ; havana_transcript "OTTHUMT00000324132.1" ; hgnc_id "HGNC:10252" ; level 2 ; orig_coord_info "chr2,11343996,11344136,-" ; protein_id "ENSP00000261535.3" ; tag not_organism_supported ; transcript_id "ROCK2--ZNF385B^ENST00000261535.7" ; transcript_name "ROCK2-201" ; transcript_support_level 5 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
ROCK2--ZNF385B HAVANA gene 50907 65598 . + . FI_gene_label "ZNF385B^ENSG00000144331.20" ; ID "ROCK2--ZNF385B^ZNF385B^ENSG00000144331.20" ; ccdsid "CCDS46464.1" ; exon_id "ENSE00003655350.1" ; exon_number 2 ; gene_id "ROCK2--ZNF385B^ZNF385B^ENSG00000144331.20" ; gene_name ZNF385B ; gene_type protein_coding ; havana_gene "OTTHUMG00000154559.11" ; havana_transcript "OTTHUMT00000336009.2" ; hgnc_id "HGNC:26332" ; level 2 ; orig_coord_info "chr2,179544827,179544916,-" ; protein_id "ENSP00000338225.5" ; tag alternative_5_UTR basic CCDS ; transcript_id "ROCK2--ZNF385B^ENST00000336917.9" ; transcript_name "ZNF385B-201" ; transcript_support_level 5 ; transcript_type protein_coding
ROCK2--ZNF385B HAVANA mRNA 50907 65598 . + . FI_gene_label "ZNF385B^ENSG00000144331.20" ; ID "ROCK2--ZNF385B^ENST00000336917.9" ; Parent "ROCK2--ZNF385B^ZNF385B^ENSG00000144331.20" ; ccdsid "CCDS46464.1" ; exon_id "ENSE00003655350.1" ; exon_number 2 ; gene_id "ROCK2--ZNF385B^ZNF385B^ENSG00000144331.20" ; gene_name ZNF385B ; gene_type protein_coding ; havana_gene "OTTHUMG00000154559.11" ; havana_transcript "OTTHUMT00000336009.2" ; hgnc_id "HGNC:26332" ; level 2 ; orig_coord_info "chr2,179544827,179544916,-" ; protein_id "ENSP00000338225.5" ; tag alternative_5_UTR basic CCDS ; transcript_id "ROCK2--ZNF385B^ENST00000336917.9" ; transcript_name "ZNF385B-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
RUNDC3B--ADAM22 HAVANA gene 21853 57560 . + . FI_gene_label "ADAM22^ENSG00000008277.14" ; ID "RUNDC3B--ADAM22^ADAM22^ENSG00000008277.14" ; ccdsid "CCDS47637.1" ; exon_id "ENSE00001120754.3" ; exon_number 1 ; gene_id "RUNDC3B--ADAM22^ADAM22^ENSG00000008277.14" ; gene_name ADAM22 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137417.10" ; havana_transcript "OTTHUMT00000268370.2" ; hgnc_id "HGNC:201" ; level 2 ; orig_coord_info "chr7,87934466,87934550,+" ; protein_id "ENSP00000265727.7" ; tag basic appris_principal_4 CCDS ; transcript_id "RUNDC3B--ADAM22^ENST00000265727.11" ; transcript_name "ADAM22-201" ; transcript_support_level 1 ; transcript_type protein_coding
RUNDC3B--ADAM22 HAVANA mRNA 21853 57560 . + . FI_gene_label "ADAM22^ENSG00000008277.14" ; ID "RUNDC3B--ADAM22^ENST00000265727.11" ; Parent "RUNDC3B--ADAM22^ADAM22^ENSG00000008277.14" ; ccdsid "CCDS47637.1" ; exon_id "ENSE00001120754.3" ; exon_number 1 ; gene_id "RUNDC3B--ADAM22^ADAM22^ENSG00000008277.14" ; gene_name ADAM22 ; gene_type protein_coding ; havana_gene "OTTHUMG00000137417.10" ; havana_transcript "OTTHUMT00000268370.2" ; hgnc_id "HGNC:201" ; level 2 ; orig_coord_info "chr7,87934466,87934550,+" ; protein_id "ENSP00000265727.7" ; tag basic appris_principal_4 CCDS ; transcript_id "RUNDC3B--ADAM22^ENST00000265727.11" ; transcript_name "ADAM22-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
RUNDC3B--ADAM22 HAVANA gene 1866 18608 . + . FI_gene_label "RUNDC3B^ENSG00000105784.15" ; ID "RUNDC3B--ADAM22^RUNDC3B^ENSG00000105784.15" ; ccdsid "CCDS5609.1" ; exon_id "ENSE00001120801.1" ; exon_number 1 ; gene_id "RUNDC3B--ADAM22^RUNDC3B^ENSG00000105784.15" ; gene_name RUNDC3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000131035.4" ; havana_transcript "OTTHUMT00000253679.1" ; hgnc_id "HGNC:30286" ; level 2 ; orig_coord_info "chr7,87628824,87628945,+" ; protein_id "ENSP00000337732.3" ; tag basic CCDS ; transcript_id "RUNDC3B--ADAM22^ENST00000338056.7" ; transcript_name "RUNDC3B-202" ; transcript_support_level 2 ; transcript_type protein_coding
RUNDC3B--ADAM22 HAVANA mRNA 1866 18608 . + . FI_gene_label "RUNDC3B^ENSG00000105784.15" ; ID "RUNDC3B--ADAM22^ENST00000338056.7" ; Parent "RUNDC3B--ADAM22^RUNDC3B^ENSG00000105784.15" ; ccdsid "CCDS5609.1" ; exon_id "ENSE00001120801.1" ; exon_number 1 ; gene_id "RUNDC3B--ADAM22^RUNDC3B^ENSG00000105784.15" ; gene_name RUNDC3B ; gene_type protein_coding ; havana_gene "OTTHUMG00000131035.4" ; havana_transcript "OTTHUMT00000253679.1" ; hgnc_id "HGNC:30286" ; level 2 ; orig_coord_info "chr7,87628824,87628945,+" ; protein_id "ENSP00000337732.3" ; tag basic CCDS ; transcript_id "RUNDC3B--ADAM22^ENST00000338056.7" ; transcript_name "RUNDC3B-202" ; transcript_support_level 2 ; transcript_type protein_coding
L1 and L2 created:
SLC25A12--AC092623.1 HAVANA gene 4451 26755 . + . FI_gene_label "SLC25A12^ENSG00000115840.14" ; ID "SLC25A12--AC092623.1^SLC25A12^ENSG00000115840.14" ; exon_id "ENSE00003611624.1" ; exon_number 1 ; gene_id "SLC25A12--AC092623.1^SLC25A12^ENSG00000115840.14" ; gene_name SLC25A12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134290.4" ; havana_transcript "OTTHUMT00000334721.1" ; hgnc_id "HGNC:10982" ; level 2 ; orig_coord_info "chr2,171894203,171894214,-" ; protein_id "ENSP00000263812.4" ; transcript_id "SLC25A12--AC092623.1^ENST00000263812.8" ; transcript_name "SLC25A12-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
SLC25A12--AC092623.1 HAVANA mRNA 4451 26755 . + . FI_gene_label "SLC25A12^ENSG00000115840.14" ; ID "SLC25A12--AC092623.1^ENST00000263812.8" ; Parent "SLC25A12--AC092623.1^SLC25A12^ENSG00000115840.14" ; exon_id "ENSE00003611624.1" ; exon_number 1 ; gene_id "SLC25A12--AC092623.1^SLC25A12^ENSG00000115840.14" ; gene_name SLC25A12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134290.4" ; havana_transcript "OTTHUMT00000334721.1" ; hgnc_id "HGNC:10982" ; level 2 ; orig_coord_info "chr2,171894203,171894214,-" ; protein_id "ENSP00000263812.4" ; transcript_id "SLC25A12--AC092623.1^ENST00000263812.8" ; transcript_name "SLC25A12-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
SLC25A12--MGAT5 HAVANA gene 4451 26755 . + . FI_gene_label "SLC25A12^ENSG00000115840.14" ; ID "SLC25A12--MGAT5^SLC25A12^ENSG00000115840.14" ; exon_id "ENSE00003611624.1" ; exon_number 1 ; gene_id "SLC25A12--MGAT5^SLC25A12^ENSG00000115840.14" ; gene_name SLC25A12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134290.4" ; havana_transcript "OTTHUMT00000334721.1" ; hgnc_id "HGNC:10982" ; level 2 ; orig_coord_info "chr2,171894203,171894214,-" ; protein_id "ENSP00000263812.4" ; transcript_id "SLC25A12--MGAT5^ENST00000263812.8" ; transcript_name "SLC25A12-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
SLC25A12--MGAT5 HAVANA mRNA 4451 26755 . + . FI_gene_label "SLC25A12^ENSG00000115840.14" ; ID "SLC25A12--MGAT5^ENST00000263812.8" ; Parent "SLC25A12--MGAT5^SLC25A12^ENSG00000115840.14" ; exon_id "ENSE00003611624.1" ; exon_number 1 ; gene_id "SLC25A12--MGAT5^SLC25A12^ENSG00000115840.14" ; gene_name SLC25A12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000134290.4" ; havana_transcript "OTTHUMT00000334721.1" ; hgnc_id "HGNC:10982" ; level 2 ; orig_coord_info "chr2,171894203,171894214,-" ; protein_id "ENSP00000263812.4" ; transcript_id "SLC25A12--MGAT5^ENST00000263812.8" ; transcript_name "SLC25A12-201" ; transcript_support_level 2 ; transcript_type nonsense_mediated_decay
L1 and L2 created:
SLC25A12--MGAT5 HAVANA gene 33412 56743 . + . FI_gene_label "MGAT5^ENSG00000152127.9" ; ID "SLC25A12--MGAT5^MGAT5^ENSG00000152127.9" ; ccdsid "CCDS2171.1" ; exon_id "ENSE00001071439.5" ; exon_number 1 ; gene_id "SLC25A12--MGAT5^MGAT5^ENSG00000152127.9" ; gene_name MGAT5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131681.5" ; havana_transcript "OTTHUMT00000504467.2" ; hgnc_id "HGNC:7049" ; level 2 ; orig_coord_info "chr2,134254404,134254644,+" ; protein_id "ENSP00000281923.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC25A12--MGAT5^ENST00000281923.4" ; transcript_name "MGAT5-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLC25A12--MGAT5 HAVANA mRNA 33412 56743 . + . FI_gene_label "MGAT5^ENSG00000152127.9" ; ID "SLC25A12--MGAT5^ENST00000281923.4" ; Parent "SLC25A12--MGAT5^MGAT5^ENSG00000152127.9" ; ccdsid "CCDS2171.1" ; exon_id "ENSE00001071439.5" ; exon_number 1 ; gene_id "SLC25A12--MGAT5^MGAT5^ENSG00000152127.9" ; gene_name MGAT5 ; gene_type protein_coding ; havana_gene "OTTHUMG00000131681.5" ; havana_transcript "OTTHUMT00000504467.2" ; hgnc_id "HGNC:7049" ; level 2 ; orig_coord_info "chr2,134254404,134254644,+" ; protein_id "ENSP00000281923.2" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLC25A12--MGAT5^ENST00000281923.4" ; transcript_name "MGAT5-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLFN11--SLFN12 HAVANA gene 14962 22369 . + . FI_gene_label "SLFN12^ENSG00000172123.13" ; ID "SLFN11--SLFN12^SLFN12^ENSG00000172123.13" ; ccdsid "CCDS11295.1" ; exon_id "ENSE00001160241.4" ; exon_number 2 ; gene_id "SLFN11--SLFN12^SLFN12^ENSG00000172123.13" ; gene_name SLFN12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132952.3" ; havana_transcript "OTTHUMT00000256490.1" ; hgnc_id "HGNC:25500" ; level 2 ; orig_coord_info "chr17,35421990,35423028,-" ; protein_id "ENSP00000302077.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLFN11--SLFN12^ENST00000304905.10" ; transcript_name "SLFN12-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLFN11--SLFN12 HAVANA mRNA 14962 22369 . + . FI_gene_label "SLFN12^ENSG00000172123.13" ; ID "SLFN11--SLFN12^ENST00000304905.10" ; Parent "SLFN11--SLFN12^SLFN12^ENSG00000172123.13" ; ccdsid "CCDS11295.1" ; exon_id "ENSE00001160241.4" ; exon_number 2 ; gene_id "SLFN11--SLFN12^SLFN12^ENSG00000172123.13" ; gene_name SLFN12 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132952.3" ; havana_transcript "OTTHUMT00000256490.1" ; hgnc_id "HGNC:25500" ; level 2 ; orig_coord_info "chr17,35421990,35423028,-" ; protein_id "ENSP00000302077.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "SLFN11--SLFN12^ENST00000304905.10" ; transcript_name "SLFN12-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
SLFN11--SLFN12 HAVANA gene 1095 11178 . + . FI_gene_label "SLFN11^ENSG00000172716.16" ; ID "SLFN11--SLFN12^SLFN11^ENSG00000172716.16" ; ccdsid "CCDS11294.1" ; exon_id "ENSE00001186651.3" ; exon_number 2 ; gene_id "SLFN11--SLFN12^SLFN11^ENSG00000172716.16" ; gene_name SLFN11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132948.3" ; havana_transcript "OTTHUMT00000256481.1" ; hgnc_id "HGNC:26633" ; level 2 ; orig_coord_info "chr17,35362739,35363807,-" ; protein_id "ENSP00000312402.4" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "SLFN11--SLFN12^ENST00000308377.8" ; transcript_name "SLFN11-201" ; transcript_support_level 1 ; transcript_type protein_coding
SLFN11--SLFN12 HAVANA mRNA 1095 11178 . + . FI_gene_label "SLFN11^ENSG00000172716.16" ; ID "SLFN11--SLFN12^ENST00000308377.8" ; Parent "SLFN11--SLFN12^SLFN11^ENSG00000172716.16" ; ccdsid "CCDS11294.1" ; exon_id "ENSE00001186651.3" ; exon_number 2 ; gene_id "SLFN11--SLFN12^SLFN11^ENSG00000172716.16" ; gene_name SLFN11 ; gene_type protein_coding ; havana_gene "OTTHUMG00000132948.3" ; havana_transcript "OTTHUMT00000256481.1" ; hgnc_id "HGNC:26633" ; level 2 ; orig_coord_info "chr17,35362739,35363807,-" ; protein_id "ENSP00000312402.4" ; tag alternative_5_UTR basic appris_principal_1 CCDS ; transcript_id "SLFN11--SLFN12^ENST00000308377.8" ; transcript_name "SLFN11-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 1021 7754 . + . FI_gene_label "STX16^ENSG00000124222.22" ; ID "STX16--NPEPL1^ENST00000312283.12" ; Parent "STX16--NPEPL1^STX16^ENSG00000124222.22" ; exon_id "ENSE00003459479.1" ; exon_number 3 ; gene_id "STX16--NPEPL1^STX16^ENSG00000124222.22" ; gene_name STX16 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033084.8" ; havana_transcript "OTTHUMT00000267911.2" ; hgnc_id "HGNC:11431" ; level 2 ; orig_coord_info "chr20,58667505,58667597,+" ; protein_id "ENSP00000312086.8" ; tag alternative_5_UTR mRNA_end_NF cds_end_NF ; transcript_id "STX16--NPEPL1^ENST00000312283.12" ; transcript_name "STX16-201" ; transcript_support_level 3 ; transcript_type protein_coding
L1 and L2 created:
STX16--NPEPL1 HAVANA gene 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
STX16--NPEPL1 HAVANA mRNA 18353 29399 . + . FI_gene_label "NPEPL1^ENSG00000215440.12" ; ID "STX16--NPEPL1^ENST00000356091.11" ; Parent "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; ccdsid "CCDS46621.1" ; exon_id "ENSE00001408052.7" ; exon_number 1 ; gene_id "STX16--NPEPL1^NPEPL1^ENSG00000215440.12" ; gene_name NPEPL1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000033060.8" ; havana_transcript "OTTHUMT00000080402.7" ; hgnc_id "HGNC:16244" ; level 2 ; orig_coord_info "chr20,58692901,58693050,+" ; protein_id "ENSP00000348395.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "STX16--NPEPL1^ENST00000356091.11" ; transcript_name "NPEPL1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TDRD9--ZNF107 ENSEMBL gene 9295 38057 . + . FI_gene_label "TDRD9^ENSG00000156414.19" ; ID "TDRD9--ZNF107^TDRD9^ENSG00000156414.19" ; exon_id "ENSE00003745512.1" ; exon_number 2 ; gene_id "TDRD9--ZNF107^TDRD9^ENSG00000156414.19" ; gene_name TDRD9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152876.4" ; hgnc_id "HGNC:20122" ; level 3 ; orig_coord_info "chr14,103975398,103975553,+" ; protein_id "ENSP00000343545.6" ; tag basic ; transcript_id "TDRD9--ZNF107^ENST00000339063.6" ; transcript_name "TDRD9-201" ; transcript_support_level 5 ; transcript_type protein_coding
TDRD9--ZNF107 ENSEMBL mRNA 9295 38057 . + . FI_gene_label "TDRD9^ENSG00000156414.19" ; ID "TDRD9--ZNF107^ENST00000339063.6" ; Parent "TDRD9--ZNF107^TDRD9^ENSG00000156414.19" ; exon_id "ENSE00003745512.1" ; exon_number 2 ; gene_id "TDRD9--ZNF107^TDRD9^ENSG00000156414.19" ; gene_name TDRD9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152876.4" ; hgnc_id "HGNC:20122" ; level 3 ; orig_coord_info "chr14,103975398,103975553,+" ; protein_id "ENSP00000343545.6" ; tag basic ; transcript_id "TDRD9--ZNF107^ENST00000339063.6" ; transcript_name "TDRD9-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
TDRD9--ZNF107 HAVANA gene 41628 53330 . + . FI_gene_label "ZNF107^ENSG00000196247.11" ; ID "TDRD9--ZNF107^ZNF107^ENSG00000196247.11" ; ccdsid "CCDS5527.1" ; exon_id "ENSE00002454694.1" ; exon_number 4 ; gene_id "TDRD9--ZNF107^ZNF107^ENSG00000196247.11" ; gene_name ZNF107 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129433.3" ; havana_transcript "OTTHUMT00000344740.1" ; hgnc_id "HGNC:12887" ; level 2 ; orig_coord_info "chr7,64691942,64691960,+" ; protein_id "ENSP00000343443.3" ; tag alternative_5_UTR basic CCDS ; transcript_id "TDRD9--ZNF107^ENST00000344930.7" ; transcript_name "ZNF107-201" ; transcript_support_level 1 ; transcript_type protein_coding
TDRD9--ZNF107 HAVANA mRNA 41628 53330 . + . FI_gene_label "ZNF107^ENSG00000196247.11" ; ID "TDRD9--ZNF107^ENST00000344930.7" ; Parent "TDRD9--ZNF107^ZNF107^ENSG00000196247.11" ; ccdsid "CCDS5527.1" ; exon_id "ENSE00002454694.1" ; exon_number 4 ; gene_id "TDRD9--ZNF107^ZNF107^ENSG00000196247.11" ; gene_name ZNF107 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129433.3" ; havana_transcript "OTTHUMT00000344740.1" ; hgnc_id "HGNC:12887" ; level 2 ; orig_coord_info "chr7,64691942,64691960,+" ; protein_id "ENSP00000343443.3" ; tag alternative_5_UTR basic CCDS ; transcript_id "TDRD9--ZNF107^ENST00000344930.7" ; transcript_name "ZNF107-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TLK2--AL669831.1 HAVANA gene 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AL669831.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
TLK2--AL669831.1 HAVANA mRNA 4784 35054 . + . FI_gene_label "TLK2^ENSG00000146872.18" ; ID "TLK2--AL669831.1^ENST00000326270.13" ; Parent "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; ccdsid "CCDS62283.1" ; exon_id "ENSE00003568961.1" ; exon_number 2 ; gene_id "TLK2--AL669831.1^TLK2^ENSG00000146872.18" ; gene_name TLK2 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179176.3" ; havana_transcript "OTTHUMT00000445140.1" ; hgnc_id "HGNC:11842" ; level 2 ; orig_coord_info "chr17,62481126,62481206,+" ; protein_id "ENSP00000316512.9" ; tag basic CCDS ; transcript_id "TLK2--AL669831.1^ENST00000326270.13" ; transcript_name "TLK2-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 1052 15760 . + . FI_gene_label "TVP23C^ENSG00000175106.17" ; ID "TVP23C--CDRT4^ENST00000225576.7" ; Parent "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; ccdsid "CCDS11170.1" ; exon_id "ENSE00001105678.2" ; exon_number 1 ; gene_id "TVP23C--CDRT4^TVP23C^ENSG00000175106.17" ; gene_name TVP23C ; gene_type protein_coding ; havana_gene "OTTHUMG00000171461.10" ; havana_transcript "OTTHUMT00000130705.3" ; hgnc_id "HGNC:30453" ; level 2 ; orig_coord_info "chr17,15563437,15563448,-" ; protein_id "ENSP00000225576.3" ; tag basic CCDS ; transcript_id "TVP23C--CDRT4^ENST00000225576.7" ; transcript_name "TVP23C-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TVP23C--CDRT4 HAVANA gene 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
TVP23C--CDRT4 HAVANA mRNA 19889 25887 . + . FI_gene_label "CDRT4^ENSG00000239704.11" ; ID "TVP23C--CDRT4^ENST00000619038.5" ; Parent "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; ccdsid "CCDS73995.1" ; exon_id "ENSE00003735347.1" ; exon_number 3 ; gene_id "TVP23C--CDRT4^CDRT4^ENSG00000239704.11" ; gene_name CDRT4 ; gene_type protein_coding ; havana_gene "OTTHUMG00000059070.14" ; havana_transcript "OTTHUMT00000130383.9" ; hgnc_id "HGNC:14383" ; level 2 ; orig_coord_info "chr17,15440208,15440238,-" ; protein_id "ENSP00000482523.1" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TVP23C--CDRT4^ENST00000619038.5" ; transcript_name "CDRT4-204" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
TYW1--ZNF138 HAVANA gene 23547 30026 . + . FI_gene_label "ZNF138^ENSG00000197008.10" ; ID "TYW1--ZNF138^ZNF138^ENSG00000197008.10" ; ccdsid "CCDS64660.1" ; exon_id "ENSE00003600414.1" ; exon_number 1 ; gene_id "TYW1--ZNF138^ZNF138^ENSG00000197008.10" ; gene_name ZNF138 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156603.4" ; havana_transcript "OTTHUMT00000344746.3" ; hgnc_id "HGNC:12922" ; level 2 ; orig_coord_info "chr7,64794569,64794571,+" ; protein_id "ENSP00000303533.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "TYW1--ZNF138^ENST00000307355.12" ; transcript_name "ZNF138-201" ; transcript_support_level 4 ; transcript_type protein_coding
TYW1--ZNF138 HAVANA mRNA 23547 30026 . + . FI_gene_label "ZNF138^ENSG00000197008.10" ; ID "TYW1--ZNF138^ENST00000307355.12" ; Parent "TYW1--ZNF138^ZNF138^ENSG00000197008.10" ; ccdsid "CCDS64660.1" ; exon_id "ENSE00003600414.1" ; exon_number 1 ; gene_id "TYW1--ZNF138^ZNF138^ENSG00000197008.10" ; gene_name ZNF138 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156603.4" ; havana_transcript "OTTHUMT00000344746.3" ; hgnc_id "HGNC:12922" ; level 2 ; orig_coord_info "chr7,64794569,64794571,+" ; protein_id "ENSP00000303533.7" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "TYW1--ZNF138^ENST00000307355.12" ; transcript_name "ZNF138-201" ; transcript_support_level 4 ; transcript_type protein_coding
L1 and L2 created:
TYW1--ZNF138 HAVANA gene 2339 20501 . + . FI_gene_label "TYW1^ENSG00000198874.13" ; ID "TYW1--ZNF138^TYW1^ENSG00000198874.13" ; ccdsid "CCDS5538.1" ; exon_id "ENSE00001947681.2" ; exon_number 1 ; gene_id "TYW1--ZNF138^TYW1^ENSG00000198874.13" ; gene_name TYW1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129723.5" ; havana_transcript "OTTHUMT00000251932.3" ; hgnc_id "HGNC:25598" ; level 2 ; orig_coord_info "chr7,66996979,66996982,+" ; protein_id "ENSP00000352645.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TYW1--ZNF138^ENST00000359626.10" ; transcript_name "TYW1-201" ; transcript_support_level 1 ; transcript_type protein_coding
TYW1--ZNF138 HAVANA mRNA 2339 20501 . + . FI_gene_label "TYW1^ENSG00000198874.13" ; ID "TYW1--ZNF138^ENST00000359626.10" ; Parent "TYW1--ZNF138^TYW1^ENSG00000198874.13" ; ccdsid "CCDS5538.1" ; exon_id "ENSE00001947681.2" ; exon_number 1 ; gene_id "TYW1--ZNF138^TYW1^ENSG00000198874.13" ; gene_name TYW1 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129723.5" ; havana_transcript "OTTHUMT00000251932.3" ; hgnc_id "HGNC:25598" ; level 2 ; orig_coord_info "chr7,66996979,66996982,+" ; protein_id "ENSP00000352645.5" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "TYW1--ZNF138^ENST00000359626.10" ; transcript_name "TYW1-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF521--RN7SL97P HAVANA gene 1025 21132 . + . FI_gene_label "ZNF521^ENSG00000198795.11" ; ID "ZNF521--RN7SL97P^ZNF521^ENSG00000198795.11" ; ccdsid "CCDS32806.1" ; exon_id "ENSE00003542563.1" ; exon_number 2 ; gene_id "ZNF521--RN7SL97P^ZNF521^ENSG00000198795.11" ; gene_name ZNF521 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179511.4" ; havana_transcript "OTTHUMT00000446781.3" ; hgnc_id "HGNC:24605" ; level 2 ; orig_coord_info "chr18,25350907,25350946,-" ; protein_id "ENSP00000354794.3" ; tag overlapping_uORF basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF521--RN7SL97P^ENST00000361524.8" ; transcript_name "ZNF521-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF521--RN7SL97P HAVANA mRNA 1025 21132 . + . FI_gene_label "ZNF521^ENSG00000198795.11" ; ID "ZNF521--RN7SL97P^ENST00000361524.8" ; Parent "ZNF521--RN7SL97P^ZNF521^ENSG00000198795.11" ; ccdsid "CCDS32806.1" ; exon_id "ENSE00003542563.1" ; exon_number 2 ; gene_id "ZNF521--RN7SL97P^ZNF521^ENSG00000198795.11" ; gene_name ZNF521 ; gene_type protein_coding ; havana_gene "OTTHUMG00000179511.4" ; havana_transcript "OTTHUMT00000446781.3" ; hgnc_id "HGNC:24605" ; level 2 ; orig_coord_info "chr18,25350907,25350946,-" ; protein_id "ENSP00000354794.3" ; tag overlapping_uORF basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF521--RN7SL97P^ENST00000361524.8" ; transcript_name "ZNF521-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF680--TMEM248 HAVANA gene 1005 10647 . + . FI_gene_label "ZNF680^ENSG00000173041.12" ; ID "ZNF680--TMEM248^ZNF680^ENSG00000173041.12" ; ccdsid "CCDS34644.1" ; exon_id "ENSE00001920523.2" ; exon_number 1 ; gene_id "ZNF680--TMEM248^ZNF680^ENSG00000173041.12" ; gene_name ZNF680 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156542.3" ; havana_transcript "OTTHUMT00000344568.2" ; hgnc_id "HGNC:26897" ; level 2 ; orig_coord_info "chr7,64562925,64562954,-" ; protein_id "ENSP00000309330.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF680--TMEM248^ENST00000309683.11" ; transcript_name "ZNF680-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF680--TMEM248 HAVANA mRNA 1005 10647 . + . FI_gene_label "ZNF680^ENSG00000173041.12" ; ID "ZNF680--TMEM248^ENST00000309683.11" ; Parent "ZNF680--TMEM248^ZNF680^ENSG00000173041.12" ; ccdsid "CCDS34644.1" ; exon_id "ENSE00001920523.2" ; exon_number 1 ; gene_id "ZNF680--TMEM248^ZNF680^ENSG00000173041.12" ; gene_name ZNF680 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156542.3" ; havana_transcript "OTTHUMT00000344568.2" ; hgnc_id "HGNC:26897" ; level 2 ; orig_coord_info "chr7,64562925,64562954,-" ; protein_id "ENSP00000309330.6" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF680--TMEM248^ENST00000309683.11" ; transcript_name "ZNF680-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF680--TMEM248 HAVANA gene 13648 26115 . + . FI_gene_label "TMEM248^ENSG00000106609.16" ; ID "ZNF680--TMEM248^TMEM248^ENSG00000106609.16" ; ccdsid "CCDS5536.1" ; exon_id "ENSE00001385462.2" ; exon_number 2 ; gene_id "ZNF680--TMEM248^TMEM248^ENSG00000106609.16" ; gene_name TMEM248 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129553.6" ; havana_transcript "OTTHUMT00000251745.2" ; hgnc_id "HGNC:25476" ; level 2 ; orig_coord_info "chr7,66941866,66942024,+" ; protein_id "ENSP00000340668.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF680--TMEM248^ENST00000341567.8" ; transcript_name "TMEM248-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF680--TMEM248 HAVANA mRNA 13648 26115 . + . FI_gene_label "TMEM248^ENSG00000106609.16" ; ID "ZNF680--TMEM248^ENST00000341567.8" ; Parent "ZNF680--TMEM248^TMEM248^ENSG00000106609.16" ; ccdsid "CCDS5536.1" ; exon_id "ENSE00001385462.2" ; exon_number 2 ; gene_id "ZNF680--TMEM248^TMEM248^ENSG00000106609.16" ; gene_name TMEM248 ; gene_type protein_coding ; havana_gene "OTTHUMG00000129553.6" ; havana_transcript "OTTHUMT00000251745.2" ; hgnc_id "HGNC:25476" ; level 2 ; orig_coord_info "chr7,66941866,66942024,+" ; protein_id "ENSP00000340668.4" ; tag basic MANE_Select appris_principal_1 CCDS ; transcript_id "ZNF680--TMEM248^ENST00000341567.8" ; transcript_name "TMEM248-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF92--LINC02604 HAVANA gene 1057 6998 . + . FI_gene_label "ZNF92^ENSG00000146757.14" ; ID "ZNF92--LINC02604^ZNF92^ENSG00000146757.14" ; ccdsid "CCDS34646.1" ; exon_id "ENSE00000000232.2" ; exon_number 1 ; gene_id "ZNF92--LINC02604^ZNF92^ENSG00000146757.14" ; gene_name ZNF92 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156557.2" ; havana_transcript "OTTHUMT00000344589.2" ; hgnc_id "HGNC:13168" ; level 2 ; orig_coord_info "chr7,65373998,65374000,+" ; protein_id "ENSP00000332595.8" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ZNF92--LINC02604^ENST00000328747.12" ; transcript_name "ZNF92-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF92--LINC02604 HAVANA mRNA 1057 6998 . + . FI_gene_label "ZNF92^ENSG00000146757.14" ; ID "ZNF92--LINC02604^ENST00000328747.12" ; Parent "ZNF92--LINC02604^ZNF92^ENSG00000146757.14" ; ccdsid "CCDS34646.1" ; exon_id "ENSE00000000232.2" ; exon_number 1 ; gene_id "ZNF92--LINC02604^ZNF92^ENSG00000146757.14" ; gene_name ZNF92 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156557.2" ; havana_transcript "OTTHUMT00000344589.2" ; hgnc_id "HGNC:13168" ; level 2 ; orig_coord_info "chr7,65373998,65374000,+" ; protein_id "ENSP00000332595.8" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ZNF92--LINC02604^ENST00000328747.12" ; transcript_name "ZNF92-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF92--RNU6-1254P HAVANA gene 1057 6998 . + . FI_gene_label "ZNF92^ENSG00000146757.14" ; ID "ZNF92--RNU6-1254P^ZNF92^ENSG00000146757.14" ; ccdsid "CCDS34646.1" ; exon_id "ENSE00000000232.2" ; exon_number 1 ; gene_id "ZNF92--RNU6-1254P^ZNF92^ENSG00000146757.14" ; gene_name ZNF92 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156557.2" ; havana_transcript "OTTHUMT00000344589.2" ; hgnc_id "HGNC:13168" ; level 2 ; orig_coord_info "chr7,65373998,65374000,+" ; protein_id "ENSP00000332595.8" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ZNF92--RNU6-1254P^ENST00000328747.12" ; transcript_name "ZNF92-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF92--RNU6-1254P HAVANA mRNA 1057 6998 . + . FI_gene_label "ZNF92^ENSG00000146757.14" ; ID "ZNF92--RNU6-1254P^ENST00000328747.12" ; Parent "ZNF92--RNU6-1254P^ZNF92^ENSG00000146757.14" ; ccdsid "CCDS34646.1" ; exon_id "ENSE00000000232.2" ; exon_number 1 ; gene_id "ZNF92--RNU6-1254P^ZNF92^ENSG00000146757.14" ; gene_name ZNF92 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156557.2" ; havana_transcript "OTTHUMT00000344589.2" ; hgnc_id "HGNC:13168" ; level 2 ; orig_coord_info "chr7,65373998,65374000,+" ; protein_id "ENSP00000332595.8" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ZNF92--RNU6-1254P^ENST00000328747.12" ; transcript_name "ZNF92-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF92--TDRD9 HAVANA gene 1057 6998 . + . FI_gene_label "ZNF92^ENSG00000146757.14" ; ID "ZNF92--TDRD9^ZNF92^ENSG00000146757.14" ; ccdsid "CCDS34646.1" ; exon_id "ENSE00000000232.2" ; exon_number 1 ; gene_id "ZNF92--TDRD9^ZNF92^ENSG00000146757.14" ; gene_name ZNF92 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156557.2" ; havana_transcript "OTTHUMT00000344589.2" ; hgnc_id "HGNC:13168" ; level 2 ; orig_coord_info "chr7,65373998,65374000,+" ; protein_id "ENSP00000332595.8" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ZNF92--TDRD9^ENST00000328747.12" ; transcript_name "ZNF92-201" ; transcript_support_level 1 ; transcript_type protein_coding
ZNF92--TDRD9 HAVANA mRNA 1057 6998 . + . FI_gene_label "ZNF92^ENSG00000146757.14" ; ID "ZNF92--TDRD9^ENST00000328747.12" ; Parent "ZNF92--TDRD9^ZNF92^ENSG00000146757.14" ; ccdsid "CCDS34646.1" ; exon_id "ENSE00000000232.2" ; exon_number 1 ; gene_id "ZNF92--TDRD9^ZNF92^ENSG00000146757.14" ; gene_name ZNF92 ; gene_type protein_coding ; havana_gene "OTTHUMG00000156557.2" ; havana_transcript "OTTHUMT00000344589.2" ; hgnc_id "HGNC:13168" ; level 2 ; orig_coord_info "chr7,65373998,65374000,+" ; protein_id "ENSP00000332595.8" ; tag basic MANE_Select appris_principal_4 CCDS ; transcript_id "ZNF92--TDRD9^ENST00000328747.12" ; transcript_name "ZNF92-201" ; transcript_support_level 1 ; transcript_type protein_coding
L1 and L2 created:
ZNF92--TDRD9 ENSEMBL gene 18293 47055 . + . FI_gene_label "TDRD9^ENSG00000156414.19" ; ID "ZNF92--TDRD9^TDRD9^ENSG00000156414.19" ; exon_id "ENSE00003745512.1" ; exon_number 2 ; gene_id "ZNF92--TDRD9^TDRD9^ENSG00000156414.19" ; gene_name TDRD9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152876.4" ; hgnc_id "HGNC:20122" ; level 3 ; orig_coord_info "chr14,103975398,103975553,+" ; protein_id "ENSP00000343545.6" ; tag basic ; transcript_id "ZNF92--TDRD9^ENST00000339063.6" ; transcript_name "TDRD9-201" ; transcript_support_level 5 ; transcript_type protein_coding
ZNF92--TDRD9 ENSEMBL mRNA 18293 47055 . + . FI_gene_label "TDRD9^ENSG00000156414.19" ; ID "ZNF92--TDRD9^ENST00000339063.6" ; Parent "ZNF92--TDRD9^TDRD9^ENSG00000156414.19" ; exon_id "ENSE00003745512.1" ; exon_number 2 ; gene_id "ZNF92--TDRD9^TDRD9^ENSG00000156414.19" ; gene_name TDRD9 ; gene_type protein_coding ; havana_gene "OTTHUMG00000152876.4" ; hgnc_id "HGNC:20122" ; level 3 ; orig_coord_info "chr14,103975398,103975553,+" ; protein_id "ENSP00000343545.6" ; tag basic ; transcript_id "ZNF92--TDRD9^ENST00000339063.6" ; transcript_name "TDRD9-201" ; transcript_support_level 5 ; transcript_type protein_coding
L1 and L2 created:
AC007785.3--IGFL2 HAVANA gene 1001 5020 . + . FI_gene_label "AC007785.3^ENSG00000268401.2" ; ID "AC007785.3--IGFL2^AC007785.3^ENSG00000268401.2" ; exon_id "ENSE00003013757.2" ; exon_number 1 ; gene_id "AC007785.3--IGFL2^AC007785.3^ENSG00000268401.2" ; gene_name "AC007785.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000182490.2" ; havana_transcript "OTTHUMT00000461696.2" ; level 2 ; orig_coord_info "chr19,46027648,46028043,+" ; tag basic TAGENE ; transcript_id "AC007785.3--IGFL2^ENST00000595955.2" ; transcript_name "AC007785.3-201" ; transcript_support_level 5 ; transcript_type lncRNA
AC007785.3--IGFL2 HAVANA RNA 1001 5020 . + . FI_gene_label "AC007785.3^ENSG00000268401.2" ; ID "AC007785.3--IGFL2^ENST00000595955.2" ; Parent "AC007785.3--IGFL2^AC007785.3^ENSG00000268401.2" ; exon_id "ENSE00003013757.2" ; exon_number 1 ; gene_id "AC007785.3--IGFL2^AC007785.3^ENSG00000268401.2" ; gene_name "AC007785.3" ; gene_type lncRNA ; havana_gene "OTTHUMG00000182490.2" ; havana_transcript "OTTHUMT00000461696.2" ; level 2 ; orig_coord_info "chr19,46027648,46028043,+" ; tag basic TAGENE ; transcript_id "AC007785.3--IGFL2^ENST00000595955.2" ; transcript_name "AC007785.3-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
AC015911.9--SLFN12L HAVANA gene 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
AC015911.9--SLFN12L HAVANA RNA 1001 1691 . + . FI_gene_label "AC015911.9^ENSG00000286030.2" ; ID "AC015911.9--SLFN12L^ENST00000650652.2" ; Parent "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; exon_id "ENSE00003850003.2" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^AC015911.9^ENSG00000286030.2" ; gene_name "AC015911.9" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000193507.2" ; havana_transcript "OTTHUMT00000502481.2" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr17,35522279,35522969,-" ; tag basic ; transcript_id "AC015911.9--SLFN12L^ENST00000650652.2" ; transcript_name "AC015911.9-201" ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
AC015911.9--SLFN12L ENSEMBL gene 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
AC015911.9--SLFN12L ENSEMBL RNA 5824 9825 . + . FI_gene_label "SLFN12L^ENSG00000286065.2" ; ID "AC015911.9--SLFN12L^ENST00000675965.1" ; Parent "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; exon_id "ENSE00003899764.1" ; exon_number 1 ; gene_id "AC015911.9--SLFN12L^SLFN12L^ENSG00000286065.2" ; gene_name SLFN12L ; gene_type lncRNA ; havana_gene "OTTHUMG00000167707.2" ; hgnc_id "HGNC:33920" ; level 3 ; orig_coord_info "chr17,35480502,35480513,-" ; transcript_id "AC015911.9--SLFN12L^ENST00000675965.1" ; transcript_name "SLFN12L-206" ; transcript_type lncRNA
L1 and L2 created:
AC091132.4--AC103810.6 HAVANA gene 3561 4511 . + . FI_gene_label "AC091132.4^ENSG00000267198.1" ; ID "AC091132.4--AC103810.6^AC091132.4^ENSG00000267198.1" ; exon_id "ENSE00002974385.1" ; exon_number 1 ; gene_id "AC091132.4--AC103810.6^AC091132.4^ENSG00000267198.1" ; gene_name "AC091132.4" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180602.1" ; havana_transcript "OTTHUMT00000452149.1" ; level 2 ; orig_coord_info "chr17,45552855,45553267,+" ; tag basic ; transcript_id "AC091132.4--AC103810.6^ENST00000585761.1" ; transcript_name "AC091132.4-205" ; transcript_support_level 4 ; transcript_type lncRNA
AC091132.4--AC103810.6 HAVANA RNA 3561 4511 . + . FI_gene_label "AC091132.4^ENSG00000267198.1" ; ID "AC091132.4--AC103810.6^ENST00000585761.1" ; Parent "AC091132.4--AC103810.6^AC091132.4^ENSG00000267198.1" ; exon_id "ENSE00002974385.1" ; exon_number 1 ; gene_id "AC091132.4--AC103810.6^AC091132.4^ENSG00000267198.1" ; gene_name "AC091132.4" ; gene_type lncRNA ; havana_gene "OTTHUMG00000180602.1" ; havana_transcript "OTTHUMT00000452149.1" ; level 2 ; orig_coord_info "chr17,45552855,45553267,+" ; tag basic ; transcript_id "AC091132.4--AC103810.6^ENST00000585761.1" ; transcript_name "AC091132.4-205" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AC091132.4--AC103810.6 HAVANA gene 11023 11113 . + . FI_gene_label "AC103810.6^ENSG00000272134.1" ; ID "AC091132.4--AC103810.6^AC103810.6^ENSG00000272134.1" ; exon_id "ENSE00003698417.1" ; exon_number 1 ; gene_id "AC091132.4--AC103810.6^AC103810.6^ENSG00000272134.1" ; gene_name "AC103810.6" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000185416.1" ; havana_transcript "OTTHUMT00000470480.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr17,64881091,64881181,+" ; tag basic ; transcript_id "AC091132.4--AC103810.6^ENST00000607821.1" ; transcript_name "AC103810.6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
AC091132.4--AC103810.6 HAVANA RNA 11023 11113 . + . FI_gene_label "AC103810.6^ENSG00000272134.1" ; ID "AC091132.4--AC103810.6^ENST00000607821.1" ; Parent "AC091132.4--AC103810.6^AC103810.6^ENSG00000272134.1" ; exon_id "ENSE00003698417.1" ; exon_number 1 ; gene_id "AC091132.4--AC103810.6^AC103810.6^ENSG00000272134.1" ; gene_name "AC103810.6" ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000185416.1" ; havana_transcript "OTTHUMT00000470480.1" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chr17,64881091,64881181,+" ; tag basic ; transcript_id "AC091132.4--AC103810.6^ENST00000607821.1" ; transcript_name "AC103810.6-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
AC217774.1--CRHR1 HAVANA gene 1001 2275 . + . FI_gene_label "AC217774.1^ENSG00000265547.1" ; ID "AC217774.1--CRHR1^AC217774.1^ENSG00000265547.1" ; exon_id "ENSE00002724175.1" ; exon_number 1 ; gene_id "AC217774.1--CRHR1^AC217774.1^ENSG00000265547.1" ; gene_name "AC217774.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000178244.1" ; havana_transcript "OTTHUMT00000441151.1" ; level 2 ; orig_coord_info "chr17,45732703,45732977,-" ; tag basic ; transcript_id "AC217774.1--CRHR1^ENST00000578936.1" ; transcript_name "AC217774.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
AC217774.1--CRHR1 HAVANA RNA 1001 2275 . + . FI_gene_label "AC217774.1^ENSG00000265547.1" ; ID "AC217774.1--CRHR1^ENST00000578936.1" ; Parent "AC217774.1--CRHR1^AC217774.1^ENSG00000265547.1" ; exon_id "ENSE00002724175.1" ; exon_number 1 ; gene_id "AC217774.1--CRHR1^AC217774.1^ENSG00000265547.1" ; gene_name "AC217774.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000178244.1" ; havana_transcript "OTTHUMT00000441151.1" ; level 2 ; orig_coord_info "chr17,45732703,45732977,-" ; tag basic ; transcript_id "AC217774.1--CRHR1^ENST00000578936.1" ; transcript_name "AC217774.1-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AC217774.2--CRHR1 HAVANA gene 1001 2317 . + . FI_gene_label "AC217774.2^ENSG00000265964.1" ; ID "AC217774.2--CRHR1^AC217774.2^ENSG00000265964.1" ; exon_id "ENSE00002720369.1" ; exon_number 1 ; gene_id "AC217774.2--CRHR1^AC217774.2^ENSG00000265964.1" ; gene_name "AC217774.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000178245.1" ; havana_transcript "OTTHUMT00000441152.1" ; level 2 ; orig_coord_info "chr17,45734284,45734669,-" ; tag basic ; transcript_id "AC217774.2--CRHR1^ENST00000580347.1" ; transcript_name "AC217774.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
AC217774.2--CRHR1 HAVANA RNA 1001 2317 . + . FI_gene_label "AC217774.2^ENSG00000265964.1" ; ID "AC217774.2--CRHR1^ENST00000580347.1" ; Parent "AC217774.2--CRHR1^AC217774.2^ENSG00000265964.1" ; exon_id "ENSE00002720369.1" ; exon_number 1 ; gene_id "AC217774.2--CRHR1^AC217774.2^ENSG00000265964.1" ; gene_name "AC217774.2" ; gene_type lncRNA ; havana_gene "OTTHUMG00000178245.1" ; havana_transcript "OTTHUMT00000441152.1" ; level 2 ; orig_coord_info "chr17,45734284,45734669,-" ; tag basic ; transcript_id "AC217774.2--CRHR1^ENST00000580347.1" ; transcript_name "AC217774.2-201" ; transcript_support_level 4 ; transcript_type lncRNA
L1 and L2 created:
AL512590.2--CCDC180 HAVANA gene 1001 11243 . + . FI_gene_label "AL512590.2^ENSG00000254633.2" ; ID "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; exon_id "ENSE00002146032.2" ; exon_number 1 ; gene_id "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; gene_name "AL512590.2" ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000167000.2" ; havana_transcript "OTTHUMT00000392365.2" ; level 2 ; orig_coord_info "chr9,97276569,97276697,+" ; tag basic ; transcript_id "AL512590.2--CCDC180^ENST00000531758.2" ; transcript_name "AL512590.2-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
AL512590.2--CCDC180 HAVANA RNA 1001 11243 . + . FI_gene_label "AL512590.2^ENSG00000254633.2" ; ID "AL512590.2--CCDC180^ENST00000531758.2" ; Parent "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; exon_id "ENSE00002146032.2" ; exon_number 1 ; gene_id "AL512590.2--CCDC180^AL512590.2^ENSG00000254633.2" ; gene_name "AL512590.2" ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000167000.2" ; havana_transcript "OTTHUMT00000392365.2" ; level 2 ; orig_coord_info "chr9,97276569,97276697,+" ; tag basic ; transcript_id "AL512590.2--CCDC180^ENST00000531758.2" ; transcript_name "AL512590.2-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
L1 and L2 created:
DTNB--USP21P1 HAVANA gene 37520 39393 . + . FI_gene_label "USP21P1^ENSG00000224826.1" ; ID "DTNB--USP21P1^USP21P1^ENSG00000224826.1" ; exon_id "ENSE00001732051.1" ; exon_number 1 ; gene_id "DTNB--USP21P1^USP21P1^ENSG00000224826.1" ; gene_name USP21P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000153360.1" ; havana_transcript "OTTHUMT00000330871.1" ; hgnc_id "HGNC:54618" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,224169664,224171537,+" ; tag pseudo_consens basic ; transcript_id "DTNB--USP21P1^ENST00000401725.2" ; transcript_name "USP21P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
DTNB--USP21P1 HAVANA RNA 37520 39393 . + . FI_gene_label "USP21P1^ENSG00000224826.1" ; ID "DTNB--USP21P1^ENST00000401725.2" ; Parent "DTNB--USP21P1^USP21P1^ENSG00000224826.1" ; exon_id "ENSE00001732051.1" ; exon_number 1 ; gene_id "DTNB--USP21P1^USP21P1^ENSG00000224826.1" ; gene_name USP21P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000153360.1" ; havana_transcript "OTTHUMT00000330871.1" ; hgnc_id "HGNC:54618" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr2,224169664,224171537,+" ; tag pseudo_consens basic ; transcript_id "DTNB--USP21P1^ENST00000401725.2" ; transcript_name "USP21P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
FBXO25--AC240565.1 HAVANA gene 26102 34357 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "FBXO25--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
FBXO25--AC240565.1 HAVANA RNA 26102 34357 . + . FI_gene_label "AC240565.1^ENSG00000280136.2" ; ID "FBXO25--AC240565.1^ENST00000624936.2" ; Parent "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; exon_id "ENSE00003756821.1" ; exon_number 1 ; gene_id "FBXO25--AC240565.1^AC240565.1^ENSG00000280136.2" ; gene_name "AC240565.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000189256.2" ; havana_transcript "OTTHUMT00000479189.2" ; level 2 ; orig_coord_info "chr17,118383,118578,-" ; tag not_best_in_genome_evidence basic ; transcript_id "FBXO25--AC240565.1^ENST00000624936.2" ; transcript_name "AC240565.1-201" ; transcript_support_level 5 ; transcript_type lncRNA
L1 and L2 created:
IGFL1P2--HIF3A HAVANA gene 1001 1439 . + . FI_gene_label "IGFL1P2^ENSG00000268238.1" ; ID "IGFL1P2--HIF3A^IGFL1P2^ENSG00000268238.1" ; exon_id "ENSE00003064899.1" ; exon_number 1 ; gene_id "IGFL1P2--HIF3A^IGFL1P2^ENSG00000268238.1" ; gene_name IGFL1P2 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000182502.1" ; havana_transcript "OTTHUMT00000461725.1" ; hgnc_id "HGNC:32957" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr19,46260801,46260858,-" ; tag basic ; transcript_id "IGFL1P2--HIF3A^ENST00000593820.1" ; transcript_name "IGFL1P2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
IGFL1P2--HIF3A HAVANA RNA 1001 1439 . + . FI_gene_label "IGFL1P2^ENSG00000268238.1" ; ID "IGFL1P2--HIF3A^ENST00000593820.1" ; Parent "IGFL1P2--HIF3A^IGFL1P2^ENSG00000268238.1" ; exon_id "ENSE00003064899.1" ; exon_number 1 ; gene_id "IGFL1P2--HIF3A^IGFL1P2^ENSG00000268238.1" ; gene_name IGFL1P2 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000182502.1" ; havana_transcript "OTTHUMT00000461725.1" ; hgnc_id "HGNC:32957" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr19,46260801,46260858,-" ; tag basic ; transcript_id "IGFL1P2--HIF3A^ENST00000593820.1" ; transcript_name "IGFL1P2-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
LINC01654--IGSF21 HAVANA gene 1001 5471 . + . FI_gene_label "LINC01654^ENSG00000261781.1" ; ID "LINC01654--IGSF21^LINC01654^ENSG00000261781.1" ; exon_id "ENSE00002609651.1" ; exon_number 1 ; gene_id "LINC01654--IGSF21^LINC01654^ENSG00000261781.1" ; gene_name LINC01654 ; gene_type lncRNA ; havana_gene "OTTHUMG00000175750.1" ; havana_transcript "OTTHUMT00000431027.1" ; hgnc_id "HGNC:52442" ; level 2 ; orig_coord_info "chr1,18065657,18065847,+" ; tag basic ; transcript_id "LINC01654--IGSF21^ENST00000569711.1" ; transcript_name "LINC01654-201" ; transcript_support_level 1 ; transcript_type lncRNA
LINC01654--IGSF21 HAVANA RNA 1001 5471 . + . FI_gene_label "LINC01654^ENSG00000261781.1" ; ID "LINC01654--IGSF21^ENST00000569711.1" ; Parent "LINC01654--IGSF21^LINC01654^ENSG00000261781.1" ; exon_id "ENSE00002609651.1" ; exon_number 1 ; gene_id "LINC01654--IGSF21^LINC01654^ENSG00000261781.1" ; gene_name LINC01654 ; gene_type lncRNA ; havana_gene "OTTHUMG00000175750.1" ; havana_transcript "OTTHUMT00000431027.1" ; hgnc_id "HGNC:52442" ; level 2 ; orig_coord_info "chr1,18065657,18065847,+" ; tag basic ; transcript_id "LINC01654--IGSF21^ENST00000569711.1" ; transcript_name "LINC01654-201" ; transcript_support_level 1 ; transcript_type lncRNA
L1 and L2 created:
LINC02210--CRHR1 HAVANA gene 6724 8993 . + . FI_gene_label "LINC02210^ENSG00000204650.14" ; ID "LINC02210--CRHR1^LINC02210^ENSG00000204650.14" ; exon_id "ENSE00001797982.1" ; exon_number 1 ; gene_id "LINC02210--CRHR1^LINC02210^ENSG00000204650.14" ; gene_name LINC02210 ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000132521.5" ; havana_transcript "OTTHUMT00000255707.3" ; hgnc_id "HGNC:26327" ; level 2 ; orig_coord_info "chr17,45633049,45633174,+" ; tag basic ; transcript_id "LINC02210--CRHR1^ENST00000444561.2" ; transcript_name "LINC02210-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
LINC02210--CRHR1 HAVANA RNA 6724 8993 . + . FI_gene_label "LINC02210^ENSG00000204650.14" ; ID "LINC02210--CRHR1^ENST00000444561.2" ; Parent "LINC02210--CRHR1^LINC02210^ENSG00000204650.14" ; exon_id "ENSE00001797982.1" ; exon_number 1 ; gene_id "LINC02210--CRHR1^LINC02210^ENSG00000204650.14" ; gene_name LINC02210 ; gene_type transcribed_unitary_pseudogene ; havana_gene "OTTHUMG00000132521.5" ; havana_transcript "OTTHUMT00000255707.3" ; hgnc_id "HGNC:26327" ; level 2 ; orig_coord_info "chr17,45633049,45633174,+" ; tag basic ; transcript_id "LINC02210--CRHR1^ENST00000444561.2" ; transcript_name "LINC02210-201" ; transcript_support_level NA ; transcript_type transcribed_unitary_pseudogene
L1 and L2 created:
LRCH2--TRMT1P1 HAVANA gene 22784 24941 . + . FI_gene_label "TRMT1P1^ENSG00000231093.1" ; ID "LRCH2--TRMT1P1^TRMT1P1^ENSG00000231093.1" ; exon_id "ENSE00001726151.1" ; exon_number 1 ; gene_id "LRCH2--TRMT1P1^TRMT1P1^ENSG00000231093.1" ; gene_name TRMT1P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000022594.1" ; havana_transcript "OTTHUMT00000058632.1" ; hgnc_id "HGNC:55145" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chrX,145630218,145631967,+" ; tag basic ; transcript_id "LRCH2--TRMT1P1^ENST00000443260.1" ; transcript_name "TRMT1P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
LRCH2--TRMT1P1 HAVANA RNA 22784 24941 . + . FI_gene_label "TRMT1P1^ENSG00000231093.1" ; ID "LRCH2--TRMT1P1^ENST00000443260.1" ; Parent "LRCH2--TRMT1P1^TRMT1P1^ENSG00000231093.1" ; exon_id "ENSE00001726151.1" ; exon_number 1 ; gene_id "LRCH2--TRMT1P1^TRMT1P1^ENSG00000231093.1" ; gene_name TRMT1P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000022594.1" ; havana_transcript "OTTHUMT00000058632.1" ; hgnc_id "HGNC:55145" ; level 2 ; ont "PGO:0000004" ; orig_coord_info "chrX,145630218,145631967,+" ; tag basic ; transcript_id "LRCH2--TRMT1P1^ENST00000443260.1" ; transcript_name "TRMT1P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
MED14--FTH1P19 HAVANA gene 38402 38929 . + . FI_gene_label "FTH1P19^ENSG00000219186.2" ; ID "MED14--FTH1P19^FTH1P19^ENSG00000219186.2" ; exon_id "ENSE00001750300.1" ; exon_number 1 ; gene_id "MED14--FTH1P19^FTH1P19^ENSG00000219186.2" ; gene_name FTH1P19 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000033179.2" ; havana_transcript "OTTHUMT00000080887.2" ; hgnc_id "HGNC:33525" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chrX,37492021,37492548,+" ; tag pseudo_consens basic ; transcript_id "MED14--FTH1P19^ENST00000402402.2" ; transcript_name "FTH1P19-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
MED14--FTH1P19 HAVANA RNA 38402 38929 . + . FI_gene_label "FTH1P19^ENSG00000219186.2" ; ID "MED14--FTH1P19^ENST00000402402.2" ; Parent "MED14--FTH1P19^FTH1P19^ENSG00000219186.2" ; exon_id "ENSE00001750300.1" ; exon_number 1 ; gene_id "MED14--FTH1P19^FTH1P19^ENSG00000219186.2" ; gene_name FTH1P19 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000033179.2" ; havana_transcript "OTTHUMT00000080887.2" ; hgnc_id "HGNC:33525" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chrX,37492021,37492548,+" ; tag pseudo_consens basic ; transcript_id "MED14--FTH1P19^ENST00000402402.2" ; transcript_name "FTH1P19-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
MED14--FTH1P27 HAVANA gene 38402 38952 . + . FI_gene_label "FTH1P27^ENSG00000234355.3" ; ID "MED14--FTH1P27^FTH1P27^ENSG00000234355.3" ; exon_id "ENSE00001644192.1" ; exon_number 1 ; gene_id "MED14--FTH1P27^FTH1P27^ENSG00000234355.3" ; gene_name FTH1P27 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000033173.2" ; havana_transcript "OTTHUMT00000080879.2" ; hgnc_id "HGNC:39091" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chrX,37505310,37505860,+" ; tag pseudo_consens basic ; transcript_id "MED14--FTH1P27^ENST00000449509.1" ; transcript_name "FTH1P27-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
MED14--FTH1P27 HAVANA RNA 38402 38952 . + . FI_gene_label "FTH1P27^ENSG00000234355.3" ; ID "MED14--FTH1P27^ENST00000449509.1" ; Parent "MED14--FTH1P27^FTH1P27^ENSG00000234355.3" ; exon_id "ENSE00001644192.1" ; exon_number 1 ; gene_id "MED14--FTH1P27^FTH1P27^ENSG00000234355.3" ; gene_name FTH1P27 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000033173.2" ; havana_transcript "OTTHUMT00000080879.2" ; hgnc_id "HGNC:39091" ; level 1 ; ont "PGO:0000005" ; orig_coord_info "chrX,37505310,37505860,+" ; tag pseudo_consens basic ; transcript_id "MED14--FTH1P27^ENST00000449509.1" ; transcript_name "FTH1P27-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
ORC2--AC068196.1 HAVANA gene 25173 29548 . + . FI_gene_label "AC068196.1^ENSG00000238171.1" ; ID "ORC2--AC068196.1^AC068196.1^ENSG00000238171.1" ; exon_id "ENSE00001781619.1" ; exon_number 1 ; gene_id "ORC2--AC068196.1^AC068196.1^ENSG00000238171.1" ; gene_name "AC068196.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154203.1" ; havana_transcript "OTTHUMT00000334382.1" ; level 2 ; orig_coord_info "chr2,181105853,181105968,-" ; tag basic ; transcript_id "ORC2--AC068196.1^ENST00000456895.1" ; transcript_name "AC068196.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
ORC2--AC068196.1 HAVANA RNA 25173 29548 . + . FI_gene_label "AC068196.1^ENSG00000238171.1" ; ID "ORC2--AC068196.1^ENST00000456895.1" ; Parent "ORC2--AC068196.1^AC068196.1^ENSG00000238171.1" ; exon_id "ENSE00001781619.1" ; exon_number 1 ; gene_id "ORC2--AC068196.1^AC068196.1^ENSG00000238171.1" ; gene_name "AC068196.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000154203.1" ; havana_transcript "OTTHUMT00000334382.1" ; level 2 ; orig_coord_info "chr2,181105853,181105968,-" ; tag basic ; transcript_id "ORC2--AC068196.1^ENST00000456895.1" ; transcript_name "AC068196.1-201" ; transcript_support_level 3 ; transcript_type lncRNA
L1 and L2 created:
PARP8--LINC00276 HAVANA gene 40010 49857 . + . FI_gene_label "LINC00276^ENSG00000230448.5" ; ID "PARP8--LINC00276^LINC00276^ENSG00000230448.5" ; exon_id "ENSE00001625128.1" ; exon_number 1 ; gene_id "PARP8--LINC00276^LINC00276^ENSG00000230448.5" ; gene_name LINC00276 ; gene_type lncRNA ; havana_gene "OTTHUMG00000151716.2" ; havana_transcript "OTTHUMT00000323616.2" ; hgnc_id "HGNC:38663" ; level 2 ; orig_coord_info "chr2,14400843,14400963,-" ; tag basic ; transcript_id "PARP8--LINC00276^ENST00000417751.5" ; transcript_name "LINC00276-201" ; transcript_support_level 2 ; transcript_type lncRNA
PARP8--LINC00276 HAVANA RNA 40010 49857 . + . FI_gene_label "LINC00276^ENSG00000230448.5" ; ID "PARP8--LINC00276^ENST00000417751.5" ; Parent "PARP8--LINC00276^LINC00276^ENSG00000230448.5" ; exon_id "ENSE00001625128.1" ; exon_number 1 ; gene_id "PARP8--LINC00276^LINC00276^ENSG00000230448.5" ; gene_name LINC00276 ; gene_type lncRNA ; havana_gene "OTTHUMG00000151716.2" ; havana_transcript "OTTHUMT00000323616.2" ; hgnc_id "HGNC:38663" ; level 2 ; orig_coord_info "chr2,14400843,14400963,-" ; tag basic ; transcript_id "PARP8--LINC00276^ENST00000417751.5" ; transcript_name "LINC00276-201" ; transcript_support_level 2 ; transcript_type lncRNA
L1 and L2 created:
PMS2P6--CCDC146 HAVANA gene 1001 5876 . + . FI_gene_label "PMS2P6^ENSG00000174384.9" ; ID "PMS2P6--CCDC146^PMS2P6^ENSG00000174384.9" ; exon_id "ENSE00002441642.1" ; exon_number 1 ; gene_id "PMS2P6--CCDC146^PMS2P6^ENSG00000174384.9" ; gene_name PMS2P6 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000157066.2" ; havana_transcript "OTTHUMT00000347345.2" ; hgnc_id "HGNC:33514" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,73093657,73093796,+" ; tag basic ; transcript_id "PMS2P6--CCDC146^ENST00000333674.5" ; transcript_name "PMS2P6-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
PMS2P6--CCDC146 HAVANA RNA 1001 5876 . + . FI_gene_label "PMS2P6^ENSG00000174384.9" ; ID "PMS2P6--CCDC146^ENST00000333674.5" ; Parent "PMS2P6--CCDC146^PMS2P6^ENSG00000174384.9" ; exon_id "ENSE00002441642.1" ; exon_number 1 ; gene_id "PMS2P6--CCDC146^PMS2P6^ENSG00000174384.9" ; gene_name PMS2P6 ; gene_type unprocessed_pseudogene ; havana_gene "OTTHUMG00000157066.2" ; havana_transcript "OTTHUMT00000347345.2" ; hgnc_id "HGNC:33514" ; level 2 ; ont "PGO:0000005" ; orig_coord_info "chr7,73093657,73093796,+" ; tag basic ; transcript_id "PMS2P6--CCDC146^ENST00000333674.5" ; transcript_name "PMS2P6-201" ; transcript_support_level NA ; transcript_type unprocessed_pseudogene
L1 and L2 created:
PTPN20--BMS1P7 HAVANA gene 23485 30059 . + . FI_gene_label "BMS1P7^ENSG00000270025.2" ; ID "PTPN20--BMS1P7^BMS1P7^ENSG00000270025.2" ; exon_id "ENSE00001675840.2" ; exon_number 1 ; gene_id "PTPN20--BMS1P7^BMS1P7^ENSG00000270025.2" ; gene_name BMS1P7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018163.3" ; havana_transcript "OTTHUMT00000047911.2" ; hgnc_id "HGNC:23655" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48059827,48060016,-" ; tag basic ; transcript_id "PTPN20--BMS1P7^ENST00000602440.2" ; transcript_name "BMS1P7-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
PTPN20--BMS1P7 HAVANA RNA 23485 30059 . + . FI_gene_label "BMS1P7^ENSG00000270025.2" ; ID "PTPN20--BMS1P7^ENST00000602440.2" ; Parent "PTPN20--BMS1P7^BMS1P7^ENSG00000270025.2" ; exon_id "ENSE00001675840.2" ; exon_number 1 ; gene_id "PTPN20--BMS1P7^BMS1P7^ENSG00000270025.2" ; gene_name BMS1P7 ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000018163.3" ; havana_transcript "OTTHUMT00000047911.2" ; hgnc_id "HGNC:23655" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr10,48059827,48060016,-" ; tag basic ; transcript_id "PTPN20--BMS1P7^ENST00000602440.2" ; transcript_name "BMS1P7-201" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
RNF144A--AC068725.1 HAVANA gene 20604 23820 . + . FI_gene_label "AC068725.1^ENSG00000285548.1" ; ID "RNF144A--AC068725.1^AC068725.1^ENSG00000285548.1" ; exon_id "ENSE00003836457.1" ; exon_number 1 ; gene_id "RNF144A--AC068725.1^AC068725.1^ENSG00000285548.1" ; gene_name "AC068725.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193261.1" ; havana_transcript "OTTHUMT00000500592.1" ; level 2 ; orig_coord_info "chr2,50324643,50324712,+" ; tag basic ; transcript_id "RNF144A--AC068725.1^ENST00000649515.1" ; transcript_name "AC068725.1-201" ; transcript_type lncRNA
RNF144A--AC068725.1 HAVANA RNA 20604 23820 . + . FI_gene_label "AC068725.1^ENSG00000285548.1" ; ID "RNF144A--AC068725.1^ENST00000649515.1" ; Parent "RNF144A--AC068725.1^AC068725.1^ENSG00000285548.1" ; exon_id "ENSE00003836457.1" ; exon_number 1 ; gene_id "RNF144A--AC068725.1^AC068725.1^ENSG00000285548.1" ; gene_name "AC068725.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000193261.1" ; havana_transcript "OTTHUMT00000500592.1" ; level 2 ; orig_coord_info "chr2,50324643,50324712,+" ; tag basic ; transcript_id "RNF144A--AC068725.1^ENST00000649515.1" ; transcript_name "AC068725.1-201" ; transcript_type lncRNA
L1 and L2 created:
SLC25A12--AC092623.1 HAVANA gene 31126 33019 . + . FI_gene_label "AC092623.1^ENSG00000286697.1" ; ID "SLC25A12--AC092623.1^AC092623.1^ENSG00000286697.1" ; exon_id "ENSE00003855112.1" ; exon_number 1 ; gene_id "SLC25A12--AC092623.1^AC092623.1^ENSG00000286697.1" ; gene_name "AC092623.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195238.1" ; havana_transcript "OTTHUMT00000525509.1" ; level 2 ; orig_coord_info "chr2,134028608,134028728,+" ; tag basic TAGENE ; transcript_id "SLC25A12--AC092623.1^ENST00000662423.1" ; transcript_name "AC092623.1-201" ; transcript_type lncRNA
SLC25A12--AC092623.1 HAVANA RNA 31126 33019 . + . FI_gene_label "AC092623.1^ENSG00000286697.1" ; ID "SLC25A12--AC092623.1^ENST00000662423.1" ; Parent "SLC25A12--AC092623.1^AC092623.1^ENSG00000286697.1" ; exon_id "ENSE00003855112.1" ; exon_number 1 ; gene_id "SLC25A12--AC092623.1^AC092623.1^ENSG00000286697.1" ; gene_name "AC092623.1" ; gene_type lncRNA ; havana_gene "OTTHUMG00000195238.1" ; havana_transcript "OTTHUMT00000525509.1" ; level 2 ; orig_coord_info "chr2,134028608,134028728,+" ; tag basic TAGENE ; transcript_id "SLC25A12--AC092623.1^ENST00000662423.1" ; transcript_name "AC092623.1-201" ; transcript_type lncRNA
L1 and L2 created:
TLK2--AL669831.1 HAVANA gene 41389 47379 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "TLK2--AL669831.1^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
TLK2--AL669831.1 HAVANA RNA 41389 47379 . + . FI_gene_label "AL669831.1^ENSG00000228327.3" ; ID "TLK2--AL669831.1^ENST00000428504.2" ; Parent "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; exon_id "ENSE00001630466.1" ; exon_number 1 ; gene_id "TLK2--AL669831.1^AL669831.1^ENSG00000228327.3" ; gene_name "AL669831.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000002406.2" ; havana_transcript "OTTHUMT00000488438.1" ; level 2 ; ont "PGO:0000005" "PGO:0000019" ; orig_coord_info "chr1,774171,774280,-" ; tag basic ; transcript_id "TLK2--AL669831.1^ENST00000428504.2" ; transcript_name "AL669831.1-202" ; transcript_support_level NA ; transcript_type transcribed_unprocessed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
TLK2P1--AC110079.1 HAVANA RNA 1001 4192 . + . FI_gene_label "TLK2P1^ENSG00000226049.3" ; ID "TLK2P1--AC110079.1^ENST00000530992.1" ; Parent "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; exon_id "ENSE00002174619.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^TLK2P1^ENSG00000226049.3" ; gene_name TLK2P1 ; gene_type processed_pseudogene ; havana_gene "OTTHUMG00000166422.1" ; havana_transcript "OTTHUMT00000389700.1" ; hgnc_id "HGNC:18048" ; level 1 ; ont "PGO:0000004" ; orig_coord_info "chr17,34036681,34039872,-" ; tag pseudo_consens basic ; transcript_id "TLK2P1--AC110079.1^ENST00000530992.1" ; transcript_name "TLK2P1-201" ; transcript_support_level NA ; transcript_type processed_pseudogene
L1 and L2 created:
TLK2P1--AC110079.1 HAVANA gene 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
TLK2P1--AC110079.1 HAVANA RNA 7193 19707 . + . FI_gene_label "AC110079.1^ENSG00000260404.3" ; ID "TLK2P1--AC110079.1^ENST00000567913.2" ; Parent "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; exon_id "ENSE00002625896.1" ; exon_number 1 ; gene_id "TLK2P1--AC110079.1^AC110079.1^ENSG00000260404.3" ; gene_name "AC110079.1" ; gene_type transcribed_unprocessed_pseudogene ; havana_gene "OTTHUMG00000161164.4" ; havana_transcript "OTTHUMT00000364170.2" ; level 2 ; orig_coord_info "chr4,118591773,118591895,+" ; tag dotter_confirmed basic ; transcript_id "TLK2P1--AC110079.1^ENST00000567913.2" ; transcript_name "AC110079.1-201" ; transcript_support_level 5 ; transcript_type processed_transcript
L1 and L2 created:
ZNF521--RN7SL97P ENSEMBL gene 24133 24431 . + . FI_gene_label "RN7SL97P^ENSG00000242216.3" ; ID "ZNF521--RN7SL97P^RN7SL97P^ENSG00000242216.3" ; exon_id "ENSE00001867556.3" ; exon_number 1 ; gene_id "ZNF521--RN7SL97P^RN7SL97P^ENSG00000242216.3" ; gene_name RN7SL97P ; gene_type misc_RNA ; hgnc_id "HGNC:46113" ; level 3 ; orig_coord_info "chr18,25818234,25818532,-" ; tag basic ; transcript_id "ZNF521--RN7SL97P^ENST00000486780.3" ; transcript_name "RN7SL97P-201" ; transcript_support_level NA ; transcript_type misc_RNA
ZNF521--RN7SL97P ENSEMBL RNA 24133 24431 . + . FI_gene_label "RN7SL97P^ENSG00000242216.3" ; ID "ZNF521--RN7SL97P^ENST00000486780.3" ; Parent "ZNF521--RN7SL97P^RN7SL97P^ENSG00000242216.3" ; exon_id "ENSE00001867556.3" ; exon_number 1 ; gene_id "ZNF521--RN7SL97P^RN7SL97P^ENSG00000242216.3" ; gene_name RN7SL97P ; gene_type misc_RNA ; hgnc_id "HGNC:46113" ; level 3 ; orig_coord_info "chr18,25818234,25818532,-" ; tag basic ; transcript_id "ZNF521--RN7SL97P^ENST00000486780.3" ; transcript_name "RN7SL97P-201" ; transcript_support_level NA ; transcript_type misc_RNA
L1 and L2 created:
ZNF92--LINC02604 HAVANA gene 9999 13439 . + . FI_gene_label "LINC02604^ENSG00000273142.1" ; ID "ZNF92--LINC02604^LINC02604^ENSG00000273142.1" ; exon_id "ENSE00003708581.1" ; exon_number 1 ; gene_id "ZNF92--LINC02604^LINC02604^ENSG00000273142.1" ; gene_name LINC02604 ; gene_type lncRNA ; havana_gene "OTTHUMG00000186265.1" ; havana_transcript "OTTHUMT00000472525.1" ; hgnc_id "HGNC:53972" ; level 2 ; orig_coord_info "chr7,66902857,66906297,+" ; tag basic ; transcript_id "ZNF92--LINC02604^ENST00000610177.1" ; transcript_name "LINC02604-201" ; transcript_support_level NA ; transcript_type lncRNA
ZNF92--LINC02604 HAVANA RNA 9999 13439 . + . FI_gene_label "LINC02604^ENSG00000273142.1" ; ID "ZNF92--LINC02604^ENST00000610177.1" ; Parent "ZNF92--LINC02604^LINC02604^ENSG00000273142.1" ; exon_id "ENSE00003708581.1" ; exon_number 1 ; gene_id "ZNF92--LINC02604^LINC02604^ENSG00000273142.1" ; gene_name LINC02604 ; gene_type lncRNA ; havana_gene "OTTHUMG00000186265.1" ; havana_transcript "OTTHUMT00000472525.1" ; hgnc_id "HGNC:53972" ; level 2 ; orig_coord_info "chr7,66902857,66906297,+" ; tag basic ; transcript_id "ZNF92--LINC02604^ENST00000610177.1" ; transcript_name "LINC02604-201" ; transcript_support_level NA ; transcript_type lncRNA
L1 and L2 created:
ZNF92--RNU6-1254P ENSEMBL gene 9999 10102 . + . FI_gene_label "RNU6-1254P^ENSG00000212568.1" ; ID "ZNF92--RNU6-1254P^RNU6-1254P^ENSG00000212568.1" ; exon_id "ENSE00001806964.1" ; exon_number 1 ; gene_id "ZNF92--RNU6-1254P^RNU6-1254P^ENSG00000212568.1" ; gene_name "RNU6-1254P" ; gene_type snRNA ; hgnc_id "HGNC:48217" ; level 3 ; orig_coord_info "chr7,66891188,66891291,+" ; tag basic ; transcript_id "ZNF92--RNU6-1254P^ENST00000391266.1" ; transcript_name "RNU6-1254P-201" ; transcript_support_level NA ; transcript_type snRNA
ZNF92--RNU6-1254P ENSEMBL RNA 9999 10102 . + . FI_gene_label "RNU6-1254P^ENSG00000212568.1" ; ID "ZNF92--RNU6-1254P^ENST00000391266.1" ; Parent "ZNF92--RNU6-1254P^RNU6-1254P^ENSG00000212568.1" ; exon_id "ENSE00001806964.1" ; exon_number 1 ; gene_id "ZNF92--RNU6-1254P^RNU6-1254P^ENSG00000212568.1" ; gene_name "RNU6-1254P" ; gene_type snRNA ; hgnc_id "HGNC:48217" ; level 3 ; orig_coord_info "chr7,66891188,66891291,+" ; tag basic ; transcript_id "ZNF92--RNU6-1254P^ENST00000391266.1" ; transcript_name "RNU6-1254P-201" ; transcript_support_level NA ; transcript_type snRNA
926 cases fixed where L3 features have parent feature(s) missing
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check5: l1 linked to l2 ----------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
--------------------------- Check6: remove orphan l1 ---------------------------
We remove only those not supposed to be orphan
None found
------------------------------ done in 0 seconds -------------------------------
------------------------- Check7: all level3 locations -------------------------
------------------------------ done in 1 seconds -------------------------------
------------------------------ Check8: check cds -------------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check9: check exons ------------------------------
No exons created
No exons locations modified
No supernumerary exons removed
No level2 locations modified
------------------------------ done in 0 seconds -------------------------------
----------------------------- Check10: check utrs ------------------------------
1728 UTRs created that were missing
No UTRs locations modified
No supernumerary UTRs removed
------------------------------ done in 0 seconds -------------------------------
------------------------ Check11: all level2 locations -------------------------
No problem found
------------------------------ done in 0 seconds -------------------------------
------------------------ Check12: all level1 locations -------------------------
We fixed 76 wrong level1 location cases
------------------------------ done in 0 seconds -------------------------------
---------------------- Check13: remove identical isoforms ----------------------
None found
------------------------------ done in 0 seconds -------------------------------
------ End checks (done in 1 second) ------
GFF3 file parsed