Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0e/ce342ec72a56a63b3c624087e67a95/659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/a8f0722cd96643a4796053a4d09a6a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/a8f0722cd96643a4796053a4d09a6a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/9742a23f2a3c7761b1ce7d9ad23ac5/659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (4 inputs)

[W::hts_idx_load3] The index file is older than the data file: 659_bGc-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Load BAM file ...  Done
report duplicte rate based on sequence ...
report duplicte rate based on mapping  ...
generate R script ...
null device 
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