Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3f/57db900aaefd36817fd9c2b7d1bb60/659_bQZ-T1-TRNA-1_B23MHV2LT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/abbef24b906db9dff39ef9569fa42b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/abbef24b906db9dff39ef9569fa42b/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory