Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/ccf01394707df4ef8768d5f8d57cbe/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/f1ac8f0fecd46ebb3889adff47e4a4/659_dfA-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/ccf01394707df4ef8768d5f8d57cbe/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory