File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/622344ffd22014ff617d2e3f33f966/.command.log
Size
2.0 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bMa-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/622344ffd22014ff617d2e3f33f966/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/ba5949e24e12ece69326fcde6d6218/659_bMa-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cd/622344ffd22014ff617d2e3f33f966/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fc/49ca88595ba9a7053dd3ce9d1be996/659_bMa-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)

Running application...
SLC7A1--FLT3
starfusion
arriba
POLD3--NRG1
starfusion
arriba
TPCN2--PPME1
starfusion
arriba
FAF1--AL139383.1
arriba
FAF1--AL139081.2
arriba

  0%|          | 0/5 [00:00<?, ?it/s]
Processing SLC7A1--FLT3:   0%|          | 0/5 [00:00<?, ?it/s]
Processing SLC7A1--FLT3:  20%|██        | 1/5 [00:00<00:00,  8.97it/s]
Processing POLD3--NRG1:  20%|██        | 1/5 [00:00<00:00,  8.97it/s] 
Processing POLD3--NRG1:  40%|████      | 2/5 [00:00<00:00,  9.25it/s]
Processing TPCN2--PPME1:  40%|████      | 2/5 [00:00<00:00,  9.25it/s]
Processing TPCN2--PPME1:  60%|██████    | 3/5 [00:00<00:00,  9.21it/s]
Processing FAF1--AL139383.1:  60%|██████    | 3/5 [00:00<00:00,  9.21it/s]
Processing FAF1--AL139383.1:  80%|████████  | 4/5 [00:00<00:00,  9.20it/s]
Processing FAF1--AL139081.2:  80%|████████  | 4/5 [00:00<00:00,  9.20it/s]
Processing FAF1--AL139081.2: 100%|██████████| 5/5 [00:00<00:00,  9.19it/s]
Processing FAF1--AL139081.2: 100%|██████████| 5/5 [00:00<00:00,  9.18it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory