[W::hts_idx_load3] The index file is older than the data file: 659_1q-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	316329000
Known Splicing Events:	313681564
Partial Novel Splicing Events:	1804483
Novel Splicing Events:	748516
Filtered Splicing Events:	94437

Total splicing  Junctions:	622101
Known Splicing Junctions:	284349
Partial Novel Splicing Junctions:	194458
Novel Splicing Junctions:	143294

===================================================================
Create BED file ...
Create Interact file ...