File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/8e6ee9582a0347812d686319eedc98/.command.log
Size
7.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (659_bIB-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a0/6f74c2c9dc2bfd41ab7c3418f4dbec/659_bIB-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-0c31b8cc-cacb-407a-8f2b-eb2d8317e249/8e/a92a5c6841e438b1fa5ad00b3d0441/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/8e6ee9582a0347812d686319eedc98/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/6434ceda85a3d48d4a4a69da725818/659_bIB-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/8e6ee9582a0347812d686319eedc98/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
PTPRK--RSPO3
starfusion
arriba
CD2AP--FILNC1
starfusion
arriba
ZFAND3--MRS2
starfusion
arriba
ZFAND3--AL356534.1
starfusion
arriba
SLC2A13--DCDC2
starfusion
arriba
REPS1--ECHDC1
starfusion
arriba
UTRN--AL138828.1
starfusion
arriba
HAS3--CYB5B
starfusion
TRERF1--RIPOR2
starfusion
arriba
PRSS27--TPSB2
starfusion
PHF3--KIAA0408
starfusion
arriba
TLK2P1--AC110079.1
starfusion
UBA6--NAA11
starfusion
TLK2--AC240565.1
starfusion
LINC00271--ALDH5A1
starfusion
arriba
SNU13--LLPH
starfusion
HECA--UTRN
starfusion
arriba
PPFIBP1--TRERF1
starfusion
FOXP4--FOXP4
arriba
CUL9--AL592429.2
arriba
PTPRK--AL445250.1
arriba
AC092807.3--DDAH1
arriba
NFYA--KIAA0408
arriba
NFYA--SOGA3
arriba
CARMIL1--AL356534.1
arriba
TVP23C--CDRT4
arriba
PTPRK--AL356534.1
arriba
ARFGEF3--AL590652.1
arriba
AC015911.9--SLFN12L
arriba
SENP3--ASGR2
arriba
ALOX5--AC026884.1
arriba
ALOX5--IPMK
arriba
PHF3--ADGRF2
arriba
GTF2A1L--STON1-GTF2A1L
arriba

  0%|          | 0/34 [00:00<?, ?it/s]
Processing PTPRK--RSPO3:   0%|          | 0/34 [00:00<?, ?it/s]
Processing PTPRK--RSPO3:   3%|▎         | 1/34 [00:00<00:03,  9.24it/s]
Processing CD2AP--FILNC1:   3%|▎         | 1/34 [00:00<00:03,  9.24it/s]
Processing CD2AP--FILNC1:   6%|▌         | 2/34 [00:00<00:03,  9.47it/s]
Processing ZFAND3--MRS2:   6%|▌         | 2/34 [00:00<00:03,  9.47it/s] 
Processing ZFAND3--MRS2:   9%|▉         | 3/34 [00:00<00:03,  9.54it/s]
Processing ZFAND3--AL356534.1:   9%|▉         | 3/34 [00:00<00:03,  9.54it/s]
Processing ZFAND3--AL356534.1:  12%|█▏        | 4/34 [00:00<00:03,  9.58it/s]
Processing SLC2A13--DCDC2:  12%|█▏        | 4/34 [00:00<00:03,  9.58it/s]    
Processing SLC2A13--DCDC2:  15%|█▍        | 5/34 [00:00<00:03,  9.59it/s]
Processing REPS1--ECHDC1:  15%|█▍        | 5/34 [00:00<00:03,  9.59it/s] 
Processing REPS1--ECHDC1:  18%|█▊        | 6/34 [00:00<00:02,  9.61it/s]
Processing UTRN--AL138828.1:  18%|█▊        | 6/34 [00:00<00:02,  9.61it/s]
Processing UTRN--AL138828.1:  21%|██        | 7/34 [00:00<00:02,  9.61it/s]
Processing HAS3--CYB5B:  21%|██        | 7/34 [00:00<00:02,  9.61it/s]     
Processing HAS3--CYB5B:  24%|██▎       | 8/34 [00:00<00:02,  9.61it/s]
Processing TRERF1--RIPOR2:  24%|██▎       | 8/34 [00:00<00:02,  9.61it/s]
Processing TRERF1--RIPOR2:  26%|██▋       | 9/34 [00:00<00:02,  9.61it/s]
Processing PRSS27--TPSB2:  26%|██▋       | 9/34 [00:00<00:02,  9.61it/s] 
Processing PRSS27--TPSB2:  29%|██▉       | 10/34 [00:01<00:02,  9.60it/s]
Processing PHF3--KIAA0408:  29%|██▉       | 10/34 [00:01<00:02,  9.60it/s]
Processing PHF3--KIAA0408:  32%|███▏      | 11/34 [00:01<00:02,  9.60it/s]
Processing TLK2P1--AC110079.1:  32%|███▏      | 11/34 [00:01<00:02,  9.60it/s]
Processing TLK2P1--AC110079.1:  35%|███▌      | 12/34 [00:01<00:02,  9.60it/s]
Processing UBA6--NAA11:  35%|███▌      | 12/34 [00:01<00:02,  9.60it/s]       
Processing UBA6--NAA11:  38%|███▊      | 13/34 [00:01<00:02,  9.60it/s]
Processing TLK2--AC240565.1:  38%|███▊      | 13/34 [00:01<00:02,  9.60it/s]
Processing TLK2--AC240565.1:  41%|████      | 14/34 [00:01<00:02,  9.60it/s]
Processing LINC00271--ALDH5A1:  41%|████      | 14/34 [00:01<00:02,  9.60it/s]
Processing LINC00271--ALDH5A1:  44%|████▍     | 15/34 [00:01<00:01,  9.60it/s]
Processing SNU13--LLPH:  44%|████▍     | 15/34 [00:01<00:01,  9.60it/s]       
Processing SNU13--LLPH:  47%|████▋     | 16/34 [00:01<00:01,  9.60it/s]
Processing HECA--UTRN:  47%|████▋     | 16/34 [00:01<00:01,  9.60it/s] 
Processing HECA--UTRN:  50%|█████     | 17/34 [00:01<00:01,  9.61it/s]
Processing PPFIBP1--TRERF1:  50%|█████     | 17/34 [00:01<00:01,  9.61it/s]
Processing PPFIBP1--TRERF1:  53%|█████▎    | 18/34 [00:01<00:01,  9.62it/s]
Processing FOXP4--FOXP4:  53%|█████▎    | 18/34 [00:01<00:01,  9.62it/s]   
Processing FOXP4--FOXP4:  56%|█████▌    | 19/34 [00:01<00:01,  9.63it/s]
Processing CUL9--AL592429.2:  56%|█████▌    | 19/34 [00:01<00:01,  9.63it/s]
Processing CUL9--AL592429.2:  59%|█████▉    | 20/34 [00:02<00:01,  9.63it/s]
Processing PTPRK--AL445250.1:  59%|█████▉    | 20/34 [00:02<00:01,  9.63it/s]
Processing PTPRK--AL445250.1:  62%|██████▏   | 21/34 [00:02<00:01,  9.64it/s]
Processing AC092807.3--DDAH1:  62%|██████▏   | 21/34 [00:02<00:01,  9.64it/s]
Processing AC092807.3--DDAH1:  65%|██████▍   | 22/34 [00:02<00:01,  9.64it/s]
Processing NFYA--KIAA0408:  65%|██████▍   | 22/34 [00:02<00:01,  9.64it/s]   
Processing NFYA--KIAA0408:  68%|██████▊   | 23/34 [00:02<00:01,  9.64it/s]
Processing NFYA--SOGA3:  68%|██████▊   | 23/34 [00:02<00:01,  9.64it/s]   
Processing NFYA--SOGA3:  71%|███████   | 24/34 [00:02<00:01,  9.64it/s]
Processing CARMIL1--AL356534.1:  71%|███████   | 24/34 [00:02<00:01,  9.64it/s]
Processing CARMIL1--AL356534.1:  74%|███████▎  | 25/34 [00:02<00:00,  9.64it/s]
Processing TVP23C--CDRT4:  74%|███████▎  | 25/34 [00:02<00:00,  9.64it/s]      
Processing TVP23C--CDRT4:  76%|███████▋  | 26/34 [00:02<00:00,  9.64it/s]
Processing PTPRK--AL356534.1:  76%|███████▋  | 26/34 [00:02<00:00,  9.64it/s]
Processing PTPRK--AL356534.1:  79%|███████▉  | 27/34 [00:02<00:00,  9.64it/s]
Processing ARFGEF3--AL590652.1:  79%|███████▉  | 27/34 [00:02<00:00,  9.64it/s]
Processing ARFGEF3--AL590652.1:  82%|████████▏ | 28/34 [00:02<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  82%|████████▏ | 28/34 [00:02<00:00,  9.65it/s]
Processing AC015911.9--SLFN12L:  85%|████████▌ | 29/34 [00:03<00:00,  9.65it/s]
Processing SENP3--ASGR2:  85%|████████▌ | 29/34 [00:03<00:00,  9.65it/s]       
Processing SENP3--ASGR2:  88%|████████▊ | 30/34 [00:03<00:00,  9.65it/s]
Processing ALOX5--AC026884.1:  88%|████████▊ | 30/34 [00:03<00:00,  9.65it/s]
Processing ALOX5--AC026884.1:  91%|█████████ | 31/34 [00:03<00:00,  9.65it/s]
Processing ALOX5--IPMK:  91%|█████████ | 31/34 [00:03<00:00,  9.65it/s]      
Processing ALOX5--IPMK:  94%|█████████▍| 32/34 [00:03<00:00,  9.65it/s]
Processing PHF3--ADGRF2:  94%|█████████▍| 32/34 [00:03<00:00,  9.65it/s]
Processing PHF3--ADGRF2:  97%|█████████▋| 33/34 [00:03<00:00,  9.65it/s]
Processing GTF2A1L--STON1-GTF2A1L:  97%|█████████▋| 33/34 [00:03<00:00,  9.65it/s]
Processing GTF2A1L--STON1-GTF2A1L: 100%|██████████| 34/34 [00:03<00:00,  9.65it/s]
Processing GTF2A1L--STON1-GTF2A1L: 100%|██████████| 34/34 [00:03<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory