Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/508d78e264609b343e2e4f5162da7d/659_bNS-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/e259f3e2b41b84b4bd5b11f0a1285c/659_bNS-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/028fc0edf051e02251c2e70fc7094c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/06/028fc0edf051e02251c2e70fc7094c/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 338190399
[W::hts_idx_load3] The index file is older than the data file: 659_bNS-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	338190399
Known Splicing Events:	335181015
Partial Novel Splicing Events:	1572326
Novel Splicing Events:	1311840
Filtered Splicing Events:	125218

Total splicing  Junctions:	666432
Known Splicing Junctions:	293108
Partial Novel Splicing Junctions:	186854
Novel Splicing Junctions:	186470

===================================================================
Create BED file ...
Create Interact file ...