Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/3acd9a1c824c2b5131c8f42052555e/659_b6o-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/Homo_sapiens.GRCh38.102.gtf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/beae35fc5ce8fb9a16aa49e88bc11a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/3acd9a1c824c2b5131c8f42052555e/659_b6o-T1-TRNA-1_B23MHV2LT4_1_2.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/1d240687c0fcc10395485d5ad93b23/kallisto
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9b/beae35fc5ce8fb9a16aa49e88bc11a/.command.run
==> STAGING COMPLETE (6 inputs)


[quant] fragment length distribution will be estimated from the data
[index] k-mer length: 31
[index] number of targets: 194,360
[index] number of k-mers: 112,035,259
[quant] running in paired-end mode
[quant] will process pair 1: 659_b6o-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz
                             659_b6o-T1-TRNA-1_B23MHV2LT4_1_2.fastp.fastq.gz
[quant] finding pseudoalignments for the reads ... done
[quant] processed 37,961 reads, 1,823 reads pseudoaligned
[quant] estimated average fragment length: 99.8021
[   em] quantifying the abundances ... done
[   em] the Expectation-Maximization algorithm ran for 569 rounds