Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/8337a5fe6f5e62dae820cbfb0369a4/659_eGK-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/f99c1dcb20af556efd75cd5c445526/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f7/f99c1dcb20af556efd75cd5c445526/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.csi: No such file or directory
ls: *.crai: No such file or directory