File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/a89271042e75a647cdcec8a060f184/.command.log
Size
1.3 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (659_8h-T1-TRNA-1_B23MHV2LT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/4e956a0a8b9d9cde85368043eb6f69/659_8h-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/0243baf59143a09530ee8911e13e43/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/a89271042e75a647cdcec8a060f184/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/a89271042e75a647cdcec8a060f184/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/1f1c14e0ccb2c16a2d68d7b3a749de/659_8h-T1-TRNA-1_B23MHV2LT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 151
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	151
Known Splicing Events:	77
Partial Novel Splicing Events:	0
Novel Splicing Events:	74
Filtered Splicing Events:	0

Total splicing  Junctions:	21
Known Splicing Junctions:	6
Partial Novel Splicing Junctions:	0
Novel Splicing Junctions:	15

===================================================================
Create BED file ...
Create Interact file ...