Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2500817	2500976	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000334651.11_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-201"; exon_number 1; exon_id "ENSE00001679842.3"; level 2; protein_id "ENSP00000334113.5"; transcript_support_level "1"; hgnc_id "HGNC:18399"; tag "basic"; tag "MANE_Select"; tag "appris_principal_1"; tag "CCDS"; tag "PAR"; ccdsid "CCDS35195.1"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055617.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2500817,2500976,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	CDS	2500817	2500925	.	-	0	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000334651.11_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-201"; exon_number 1; exon_id "ENSE00001679842.3"; level 2; protein_id "ENSP00000334113.5"; transcript_support_level "1"; hgnc_id "HGNC:18399"; tag "basic"; tag "MANE_Select"; tag "appris_principal_1"; tag "CCDS"; tag "PAR"; ccdsid "CCDS35195.1"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055617.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2500817,2500925,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2425197	2425304	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000334651.11_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-201"; exon_number 2; exon_id "ENSE00003549694.1"; level 2; protein_id "ENSP00000334113.5"; transcript_support_level "1"; hgnc_id "HGNC:18399"; tag "basic"; tag "MANE_Select"; tag "appris_principal_1"; tag "CCDS"; tag "PAR"; ccdsid "CCDS35195.1"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055617.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2425197,2425304,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	CDS	2425197	2425304	.	-	2	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000334651.11_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-201"; exon_number 2; exon_id "ENSE00003549694.1"; level 2; protein_id "ENSP00000334113.5"; transcript_support_level "1"; hgnc_id "HGNC:18399"; tag "basic"; tag "MANE_Select"; tag "appris_principal_1"; tag "CCDS"; tag "PAR"; ccdsid "CCDS35195.1"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055617.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2425197,2425304,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2408745	2408813	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000334651.11_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-201"; exon_number 3; exon_id "ENSE00003638780.1"; level 2; protein_id "ENSP00000334113.5"; transcript_support_level "1"; hgnc_id "HGNC:18399"; tag "basic"; tag "MANE_Select"; tag "appris_principal_1"; tag "CCDS"; tag "PAR"; ccdsid "CCDS35195.1"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055617.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2408745,2408813,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	CDS	2408745	2408813	.	-	2	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000334651.11_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-201"; exon_number 3; exon_id "ENSE00003638780.1"; level 2; protein_id "ENSP00000334113.5"; transcript_support_level "1"; hgnc_id "HGNC:18399"; tag "basic"; tag "MANE_Select"; tag "appris_principal_1"; tag "CCDS"; tag "PAR"; ccdsid "CCDS35195.1"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055617.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2408745,2408813,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2291502	2291603	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000334651.11_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-201"; exon_number 4; exon_id "ENSE00003532451.1"; level 2; protein_id "ENSP00000334113.5"; transcript_support_level "1"; hgnc_id "HGNC:18399"; tag "basic"; tag "MANE_Select"; tag "appris_principal_1"; tag "CCDS"; tag "PAR"; ccdsid "CCDS35195.1"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055617.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2291502,2291603,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	CDS	2291502	2291603	.	-	2	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000334651.11_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-201"; exon_number 4; exon_id "ENSE00003532451.1"; level 2; protein_id "ENSP00000334113.5"; transcript_support_level "1"; hgnc_id "HGNC:18399"; tag "basic"; tag "MANE_Select"; tag "appris_principal_1"; tag "CCDS"; tag "PAR"; ccdsid "CCDS35195.1"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055617.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2291502,2291603,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2266740	2266947	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000334651.11_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-201"; exon_number 5; exon_id "ENSE00001761946.1"; level 2; protein_id "ENSP00000334113.5"; transcript_support_level "1"; hgnc_id "HGNC:18399"; tag "basic"; tag "MANE_Select"; tag "appris_principal_1"; tag "CCDS"; tag "PAR"; ccdsid "CCDS35195.1"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055617.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2266740,2266947,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	CDS	2266740	2266947	.	-	2	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000334651.11_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-201"; exon_number 5; exon_id "ENSE00001761946.1"; level 2; protein_id "ENSP00000334113.5"; transcript_support_level "1"; hgnc_id "HGNC:18399"; tag "basic"; tag "MANE_Select"; tag "appris_principal_1"; tag "CCDS"; tag "PAR"; ccdsid "CCDS35195.1"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055617.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2266740,2266947,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2243023	2243230	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000334651.11_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-201"; exon_number 6; exon_id "ENSE00001931920.1"; level 2; protein_id "ENSP00000334113.5"; transcript_support_level "1"; hgnc_id "HGNC:18399"; tag "basic"; tag "MANE_Select"; tag "appris_principal_1"; tag "CCDS"; tag "PAR"; ccdsid "CCDS35195.1"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055617.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2243023,2243230,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	CDS	2243023	2243230	.	-	1	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000334651.11_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-201"; exon_number 6; exon_id "ENSE00001931920.1"; level 2; protein_id "ENSP00000334113.5"; transcript_support_level "1"; hgnc_id "HGNC:18399"; tag "basic"; tag "MANE_Select"; tag "appris_principal_1"; tag "CCDS"; tag "PAR"; ccdsid "CCDS35195.1"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055617.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2243023,2243230,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2219506	2221229	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000334651.11_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-201"; exon_number 7; exon_id "ENSE00001487873.2"; level 2; protein_id "ENSP00000334113.5"; transcript_support_level "1"; hgnc_id "HGNC:18399"; tag "basic"; tag "MANE_Select"; tag "appris_principal_1"; tag "CCDS"; tag "PAR"; ccdsid "CCDS35195.1"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055617.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2219506,2221229,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	CDS	2221044	2221229	.	-	0	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000334651.11_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-201"; exon_number 7; exon_id "ENSE00001487873.2"; level 2; protein_id "ENSP00000334113.5"; transcript_support_level "1"; hgnc_id "HGNC:18399"; tag "basic"; tag "MANE_Select"; tag "appris_principal_1"; tag "CCDS"; tag "PAR"; ccdsid "CCDS35195.1"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055617.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2221044,2221229,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2500817	2500973	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000412516.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-202"; exon_number 1; exon_id "ENSE00001766079.1"; level 2; protein_id "ENSP00000391778.2"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000144307.3"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2500817,2500973,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	CDS	2500817	2500925	.	-	0	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000412516.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-202"; exon_number 1; exon_id "ENSE00001766079.1"; level 2; protein_id "ENSP00000391778.2"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000144307.3"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2500817,2500925,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2425197	2425304	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000412516.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-202"; exon_number 2; exon_id "ENSE00003549694.1"; level 2; protein_id "ENSP00000391778.2"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000144307.3"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2425197,2425304,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	CDS	2425197	2425304	.	-	2	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000412516.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-202"; exon_number 2; exon_id "ENSE00003549694.1"; level 2; protein_id "ENSP00000391778.2"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000144307.3"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2425197,2425304,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2291502	2291603	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000412516.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-202"; exon_number 3; exon_id "ENSE00003532451.1"; level 2; protein_id "ENSP00000391778.2"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000144307.3"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2291502,2291603,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	CDS	2291502	2291603	.	-	2	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000412516.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-202"; exon_number 3; exon_id "ENSE00003532451.1"; level 2; protein_id "ENSP00000391778.2"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000144307.3"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2291502,2291603,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2266740	2266947	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000412516.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-202"; exon_number 4; exon_id "ENSE00001761946.1"; level 2; protein_id "ENSP00000391778.2"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000144307.3"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2266740,2266947,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	CDS	2266740	2266947	.	-	2	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000412516.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-202"; exon_number 4; exon_id "ENSE00001761946.1"; level 2; protein_id "ENSP00000391778.2"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000144307.3"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2266740,2266947,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2243062	2243230	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000412516.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-202"; exon_number 5; exon_id "ENSE00001855840.1"; level 2; protein_id "ENSP00000391778.2"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000144307.3"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2243062,2243230,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	CDS	2243062	2243230	.	-	1	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000412516.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-202"; exon_number 5; exon_id "ENSE00001855840.1"; level 2; protein_id "ENSP00000391778.2"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000144307.3"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2243062,2243230,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2266740	2266937	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000464935.6_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "processed_transcript"; transcript_name "DHRSX-206"; exon_number 1; exon_id "ENSE00001855267.1"; level 2; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000144306.1"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2266740,2266937,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2261394	2261767	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000464935.6_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "processed_transcript"; transcript_name "DHRSX-206"; exon_number 2; exon_id "ENSE00001941233.1"; level 2; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000144306.1"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2261394,2261767,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2500311	2500650	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000444280.6_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-205"; exon_number 1; exon_id "ENSE00001487870.1"; level 2; protein_id "ENSP00000402741.1"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055618.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2500311,2500650,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2425197	2425304	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000444280.6_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-205"; exon_number 2; exon_id "ENSE00003508589.1"; level 2; protein_id "ENSP00000402741.1"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055618.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2425197,2425304,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	CDS	2425197	2425212	.	-	0	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000444280.6_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-205"; exon_number 2; exon_id "ENSE00003508589.1"; level 2; protein_id "ENSP00000402741.1"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055618.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2425197,2425212,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2408745	2408813	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000444280.6_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-205"; exon_number 3; exon_id "ENSE00003638780.1"; level 2; protein_id "ENSP00000402741.1"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055618.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2408745,2408813,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	CDS	2408745	2408813	.	-	2	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000444280.6_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-205"; exon_number 3; exon_id "ENSE00003638780.1"; level 2; protein_id "ENSP00000402741.1"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055618.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2408745,2408813,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2291502	2291603	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000444280.6_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-205"; exon_number 4; exon_id "ENSE00003532451.1"; level 2; protein_id "ENSP00000402741.1"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055618.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2291502,2291603,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	CDS	2291502	2291603	.	-	2	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000444280.6_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-205"; exon_number 4; exon_id "ENSE00003532451.1"; level 2; protein_id "ENSP00000402741.1"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055618.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2291502,2291603,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2266770	2266947	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000444280.6_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-205"; exon_number 5; exon_id "ENSE00001689320.1"; level 2; protein_id "ENSP00000402741.1"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055618.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2266770,2266947,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	CDS	2266770	2266947	.	-	2	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000444280.6_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-205"; exon_number 5; exon_id "ENSE00001689320.1"; level 2; protein_id "ENSP00000402741.1"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000055618.4"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2266770,2266947,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2502761	2502805	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000441131.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "processed_transcript"; transcript_name "DHRSX-204"; exon_number 1; exon_id "ENSE00001932007.1"; level 2; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000354624.2"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2502761,2502805,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2425197	2425304	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000441131.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "processed_transcript"; transcript_name "DHRSX-204"; exon_number 2; exon_id "ENSE00003524028.1"; level 2; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000354624.2"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2425197,2425304,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2408745	2408813	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000441131.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "processed_transcript"; transcript_name "DHRSX-204"; exon_number 3; exon_id "ENSE00003683335.1"; level 2; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000354624.2"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2408745,2408813,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2392354	2392474	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000441131.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "processed_transcript"; transcript_name "DHRSX-204"; exon_number 4; exon_id "ENSE00001866858.1"; level 2; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000354624.2"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2392354,2392474,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2291502	2291603	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000441131.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "processed_transcript"; transcript_name "DHRSX-204"; exon_number 5; exon_id "ENSE00003879199.1"; level 2; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000354624.2"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2291502,2291603,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2266854	2266947	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000441131.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "processed_transcript"; transcript_name "DHRSX-204"; exon_number 6; exon_id "ENSE00001840771.1"; level 2; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000354624.2"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2266854,2266947,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2500311	2500589	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000478825.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-207"; exon_number 1; exon_id "ENSE00001956040.1"; level 2; protein_id "ENSP00000420788.2"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000354625.2"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2500311,2500589,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2425197	2425304	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000478825.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-207"; exon_number 2; exon_id "ENSE00003524028.1"; level 2; protein_id "ENSP00000420788.2"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000354625.2"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2425197,2425304,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2408745	2408813	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000478825.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-207"; exon_number 3; exon_id "ENSE00003683335.1"; level 2; protein_id "ENSP00000420788.2"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000354625.2"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2408745,2408813,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2392354	2392474	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000478825.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-207"; exon_number 4; exon_id "ENSE00001866858.1"; level 2; protein_id "ENSP00000420788.2"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000354625.2"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2392354,2392474,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2291502	2291603	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000478825.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-207"; exon_number 5; exon_id "ENSE00003851665.1"; level 2; protein_id "ENSP00000420788.2"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000354625.2"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2291502,2291603,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	CDS	2291502	2291574	.	-	0	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000478825.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "protein_coding"; transcript_name "DHRSX-207"; exon_number 5; exon_id "ENSE00003851665.1"; level 2; protein_id "ENSP00000420788.2"; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "mRNA_end_NF"; tag "cds_end_NF"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000354625.2"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2291502,2291574,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2500817	2500960	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000430536.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "processed_transcript"; transcript_name "DHRSX-203"; exon_number 1; exon_id "ENSE00001401837.4"; level 2; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000354626.1"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2500817,2500960,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2425197	2425304	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000430536.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "processed_transcript"; transcript_name "DHRSX-203"; exon_number 2; exon_id "ENSE00003524028.1"; level 2; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000354626.1"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2425197,2425304,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2408745	2408813	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000430536.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "processed_transcript"; transcript_name "DHRSX-203"; exon_number 3; exon_id "ENSE00003683335.1"; level 2; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000354626.1"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2408745,2408813,-";
Error, chr discrepancy in gtf info for chrY	HAVANA	exon	2337831	2337999	.	-	.	gene_id "DHRSX^ENSG00000169084.15_PAR_Y"; transcript_id "ENST00000430536.7_PAR_Y"; gene_type "protein_coding"; gene_name "DHRSX"; transcript_type "processed_transcript"; transcript_name "DHRSX-203"; exon_number 4; exon_id "ENSE00001949530.1"; level 2; transcript_support_level "2"; hgnc_id "HGNC:18399"; tag "PAR"; havana_gene "OTTHUMG00000021068.6"; havana_transcript "OTTHUMT00000354626.1"; FI_gene_label "DHRSX^ENSG00000169084.15_PAR_Y"; orig_coord_info "chrY,2337831,2337999,-";
Done.
-parsing GTF file: /tmp/nxf.6yEE1rtDOQ/659_zO-T1-TRNA-1_B23MHV2LT4_1.gtf
* Running CMD: /usr/local/bin/STAR  --runThreadN 8  --genomeDir /tmp/nxf.6yEE1rtDOQ/ctat_genome_lib_build_dir/ref_genome.fa.star.idx  --outSAMtype BAM SortedByCoordinate  --twopassMode None  --alignSJDBoverhangMin 10  --genomeSuffixLengthMax 10000 --limitBAMsortRAM 47271261705  --alignInsertionFlush Right   --alignMatesGapMax 100000  --alignIntronMax 100000  --outSAMattributes All  --readFilesIn /tmp/nxf.6yEE1rtDOQ/659_zO-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz /tmp/nxf.6yEE1rtDOQ/659_zO-T1-TRNA-1_B23MHV2LT4_1_2.fastp.fastq.gz  --genomeFastaFiles /tmp/nxf.6yEE1rtDOQ/fi_workdir/659_zO-T1-TRNA-1_B23MHV2LT4_1.fa  --outSAMfilter KeepAllAddedReferences  --sjdbGTFfile /tmp/nxf.6yEE1rtDOQ/fi_workdir/659_zO-T1-TRNA-1_B23MHV2LT4_1.gtf  --alignSJstitchMismatchNmax 5 -1 5 5  --scoreGapNoncan -6  --readFilesCommand 'gunzip -c' 
* Running CMD: mv Aligned.sortedByCoord.out.bam 659_zO-T1-TRNA-1_B23MHV2LT4_1.star.sortedByCoord.out.bam
* Running CMD: samtools index 659_zO-T1-TRNA-1_B23MHV2LT4_1.star.sortedByCoord.out.bam
11:14:14 : INFO : Done.
-parsing GTF file: /tmp/nxf.6yEE1rtDOQ/fi_workdir/659_zO-T1-TRNA-1_B23MHV2LT4_1.gtf
-parsing /tmp/nxf.6yEE1rtDOQ/fi_workdir/659_zO-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam

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[6220000]   -done parsing /tmp/nxf.6yEE1rtDOQ/fi_workdir/659_zO-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam.  Extracting junction info.
junction read elimination tally: $VAR1 = {
          'num_hits: 4 != num_counted_on_fusion_contigs 1 ' => 40,
          'num_hits: 4 != num_counted_on_fusion_contigs 3 ' => 273,
          'num_hits: 5 != num_counted_on_fusion_contigs 1 ' => 36,
          'num_hits: 7 != num_counted_on_fusion_contigs 5 ' => 15,
          'num_hits: 8 != num_counted_on_fusion_contigs 4 ' => 64,
          'per_id < 96' => 20366,
          'num_hits: 7 != num_counted_on_fusion_contigs 3 ' => 3,
          'num_hits: 5 != num_counted_on_fusion_contigs 2 ' => 4,
          'num_hits: 6 != num_counted_on_fusion_contigs 4 ' => 24,
          'exons hit < 2' => 12,
          'excessive soft clipping' => 38117,
          'seq-similar region overlap' => 1037,
          'num_hits: 3 != num_counted_on_fusion_contigs 2 ' => 206,
          'num_hits: 5 != num_counted_on_fusion_contigs 4 ' => 120,
          'num_hits: 4 != num_counted_on_fusion_contigs 2 ' => 136,
          'small anchor length' => 483,
          'num_hits: 6 != num_counted_on_fusion_contigs 3 ' => 54,
          'num_hits: 9 != num_counted_on_fusion_contigs 3 ' => 24,
          ' ** passed ** ' => 62824,
          'num_hits: 5 != num_counted_on_fusion_contigs 3 ' => 27,
          'num genes matched < 2' => 69,
          'num_hits: 3 != num_counted_on_fusion_contigs 1 ' => 840,
          'num_hits: 2 != num_counted_on_fusion_contigs 1 ' => 770,
          'low complexity anchor region' => 131
        };
-writing fusion junction support info.
-outputting the spanning read info: /tmp/nxf.6yEE1rtDOQ/fi_workdir/659_zO-T1-TRNA-1_B23MHV2LT4_1.star.cSorted.dupsMarked.bam.fusion_spanning_info.
 - counting read alignments among fusion contigs.

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[9000]   -fusion SPANNING read extraction for scaff: AC006008.1--ACTR3B

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[41000]   -fusion SPANNING read extraction for scaff: AC063965.2--USP9Y

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[9000]   -fusion SPANNING read extraction for scaff: AC092666.1--ACTR3B

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[18000]   -fusion SPANNING read extraction for scaff: AC092691.1--LSAMP

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[194000]   -fusion SPANNING read extraction for scaff: ANK3--USP9Y

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[204000]   -fusion SPANNING read extraction for scaff: AP3B1--HSD17B4

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[46000]   -fusion SPANNING read extraction for scaff: AP3B1--TNFAIP8

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[36000]   -fusion SPANNING read extraction for scaff: AP3B1--RNA5SP190

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[94000]   -fusion SPANNING read extraction for scaff: ARRB1--OPHN1

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[6000]   -fusion SPANNING read extraction for scaff: BCL7A--AC068790.9

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[7000]   -fusion SPANNING read extraction for scaff: BCL7A--RFLNA

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[77000]   -fusion SPANNING read extraction for scaff: DHRSX--ZMYM3

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[5000]   -fusion SPANNING read extraction for scaff: DNA2--RNA5-8SP6

[1000]   
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[4000]   
[5000]   -fusion SPANNING read extraction for scaff: DNA2--AC140113.4

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[407000]   
[408000]   
[409000]   -fusion SPANNING read extraction for scaff: ELK4--MX1

[1000]   
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[43000]   
[44000]   
[45000]   -fusion SPANNING read extraction for scaff: GLUD1--PHYHIPL

[1000]   
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[24000]   
[25000]   -fusion SPANNING read extraction for scaff: GOLGA6L10--GOLGA2P6

[1000]   
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[472000]   -fusion SPANNING read extraction for scaff: KIAA1217--CHD8

[1000]   -fusion SPANNING read extraction for scaff: KLRC4--KLRK1

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[33000]   
[34000]   -fusion SPANNING read extraction for scaff: LARGE1--CARD8

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[430000]   
[431000]   -fusion SPANNING read extraction for scaff: MAPK10--FAHD1

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[232000]   
[233000]   -fusion SPANNING read extraction for scaff: MX1--OR13J1

[1000]   
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[6000]   
[7000]   
[8000]   
[9000]   -fusion SPANNING read extraction for scaff: NLN--TMEM232

[1000]   
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[6000]   
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[8000]   
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[64000]   
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[67000]   
[68000]   
[69000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC1

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
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[8000]   
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[59000]   
[60000]   
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[62000]   
[63000]   
[64000]   
[65000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHAC2

[1000]   
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[8000]   
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[69000]   
[70000]   -fusion SPANNING read extraction for scaff: PCDHA10--PCDHA13

[1000]   
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[53000]   
[54000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC1

[1000]   
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[49000]   
[50000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHAC2

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[53000]   
[54000]   -fusion SPANNING read extraction for scaff: PCDHA4--PCDHA13

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[56000]   
[57000]   -fusion SPANNING read extraction for scaff: PCDHA7--PCDHAC1

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[4000]   
[5000]   
[6000]   
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[8000]   
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[52000]   
[53000]   -fusion SPANNING read extraction for scaff: PCDHA7--PCDHAC2

[1000]   
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[57000]   
[58000]   -fusion SPANNING read extraction for scaff: PCDHA7--PCDHA13

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[6000]   
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[60000]   
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[63000]   
[64000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGA8

[1000]   
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[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
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[17000]   
[18000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGC5

[1000]   
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[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGC4

[1000]   
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[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
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[20000]   
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[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGA10

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
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[8000]   
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[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGB6

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
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[20000]   
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[26000]   
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[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGC3

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
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[14000]   
[15000]   
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[18000]   
[19000]   
[20000]   
[21000]   
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[25000]   
[26000]   
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[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGA11

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGA12

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
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[12000]   
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[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGB7

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
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[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
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[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   -fusion SPANNING read extraction for scaff: PCDHGA2--PCDHGA9

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
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[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
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[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGA8

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGC5

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGC4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGA10

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGB6

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGC3

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGA11

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGA12

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGB7

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   -fusion SPANNING read extraction for scaff: PCDHGA4--PCDHGA9

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA8

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGC5

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGC4

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA10

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGB6

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGC3

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA11

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA12

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGB7

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   -fusion SPANNING read extraction for scaff: PCDHGA5--PCDHGA9

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   
[19000]   
[20000]   
[21000]   
[22000]   
[23000]   
[24000]   
[25000]   
[26000]   
[27000]   
[28000]   
[29000]   
[30000]   
[31000]   
[32000]   
[33000]   
[34000]   
[35000]   
[36000]   
[37000]   
[38000]   
[39000]   
[40000]   
[41000]   
[42000]   
[43000]   
[44000]   
[45000]   
[46000]   
[47000]   
[48000]   
[49000]   
[50000]   
[51000]   
[52000]   
[53000]   
[54000]   
[55000]   
[56000]   
[57000]   
[58000]   
[59000]   
[60000]   
[61000]   
[62000]   
[63000]   
[64000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA8

[1000]   
[2000]   
[3000]   
[4000]   
[5000]   
[6000]   
[7000]   
[8000]   
[9000]   
[10000]   
[11000]   
[12000]   
[13000]   
[14000]   
[15000]   
[16000]   
[17000]   
[18000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC5

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[16000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC4

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[44000]   
[45000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA10

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[36000]   
[37000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB6

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[46000]   
[47000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGC3

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[42000]   
[43000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA11

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[35000]   
[36000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA12

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[32000]   
[33000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGB7

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[39000]   
[40000]   -fusion SPANNING read extraction for scaff: PCDHGB2--PCDHGA9

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[163000]   
[164000]   -fusion SPANNING read extraction for scaff: RHPN2P1--IGH-@-ext

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[56000]   
[57000]   -fusion SPANNING read extraction for scaff: SAMHD1--RTCB

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[31000]   
[32000]   -fusion SPANNING read extraction for scaff: SAMHD1--RFPL3S

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[30000]   
[31000]   -fusion SPANNING read extraction for scaff: SAMHD1--AL021937.4

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[34000]   
[35000]   
[36000]   -fusion SPANNING read extraction for scaff: SEC24D--METTL14-DT

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[640000]   
[641000]   -fusion SPANNING read extraction for scaff: SLC45A3--ERG

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[33000]   
[34000]   -fusion SPANNING read extraction for scaff: TLK2--AC240565.1

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[7000]   
[8000]   -fusion SPANNING read extraction for scaff: TLK2P1--AC110079.1

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[27000]   
[28000]   -fusion SPANNING read extraction for scaff: TNFAIP8--SLC25A46

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[9000]   
[10000]   -fusion SPANNING read extraction for scaff: TNFAIP8--AC008782.1

[1000]   
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[55000]   
[56000]   
[57000]   -fusion SPANNING read extraction for scaff: TRPC4AP--BPIFC

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[78000]   
[79000]   
[80000]   
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[83000]   
[84000]   
[85000]   
[86000]   -fusion SPANNING read extraction for scaff: TSBP1--NOTCH4

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[50000]   
[51000]   
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[54000]   
[55000]   
[56000]   -fusion SPANNING read extraction for scaff: TSBP1--TSBP1-AS1

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[10000]   
[11000]   
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[17000]   
[18000]   -fusion SPANNING read extraction for scaff: TVP23C--CDRT4

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[7000]   -fusion SPANNING read extraction for scaff: UPK3B--AC211486.3

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[39000]   
[40000]   -fusion SPANNING read extraction for scaff: USP9Y--AC063965.2

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[110000]   
[111000]   -fusion SPANNING read extraction for scaff: USP9Y--PTEN

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[58000]   
[59000]   -fusion SPANNING read extraction for scaff: USP9Y--XPNPEP1

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[8000]   
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[41000]   -fusion SPANNING read extraction for scaff: UTY--AC099753.1

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[47000]   
[48000]   -fusion SPANNING read extraction for scaff: UTY--VENTXP7

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[59000]   -fusion SPANNING read extraction for scaff: VWA2--TDRD1

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[18000]   -fusion SPANNING read extraction for scaff: XPNPEP1--CTNNA3

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[80000]   -fusion SPANNING read extraction for scaff: ZNF341--SPHK2
-filtered reads reasons: $VAR1 = {
          'seq similar region alignment' => 247461,
          'lacks exon overlap' => 223287
        };
EM: Starting log likelihood: -33680.311701
EM: Round [1] log likelihood: -33673.821439
EM: Round [2] log likelihood: -33670.114234
EM: Round [3] log likelihood: -33667.007640
EM: Round [4] log likelihood: -33664.339441
EM: Round [5] log likelihood: -33662.007248
EM: Round [6] log likelihood: -33659.940328
EM: Round [7] log likelihood: -33658.087440
EM: Round [8] log likelihood: -33656.410348
EM: Round [9] log likelihood: -33654.879946
EM: Round [10] log likelihood: -33653.473731
EM: Round [11] log likelihood: -33652.174076
EM: Round [12] log likelihood: -33650.967007
EM: Round [13] log likelihood: -33649.841305
EM: Round [14] log likelihood: -33648.787855
EM: Round [15] log likelihood: -33647.799154
EM: Round [16] log likelihood: -33646.868942
EM: Round [17] log likelihood: -33645.991925
EM: Round [18] log likelihood: -33645.163565
EM: Round [19] log likelihood: -33644.379925
EM: Round [20] log likelihood: -33643.637546
EM: Round [21] log likelihood: -33642.933358
EM: Round [22] log likelihood: -33642.264609
EM: Round [23] log likelihood: -33641.628814
EM: Round [24] log likelihood: -33641.023714
EM: Round [25] log likelihood: -33640.447242
EM: Round [26] log likelihood: -33639.897505
EM: Round [27] log likelihood: -33639.372756
EM: Round [28] log likelihood: -33638.871384
EM: Round [29] log likelihood: -33638.391901
EM: Round [30] log likelihood: -33637.932925
EM: Round [31] log likelihood: -33637.493179
EM: Round [32] log likelihood: -33637.071477
EM: Round [33] log likelihood: -33636.666720
EM: Round [34] log likelihood: -33636.277886
EM: Round [35] log likelihood: -33635.904028
EM: Round [36] log likelihood: -33635.544267
EM: Round [37] log likelihood: -33635.197785
EM: Round [38] log likelihood: -33634.863826
EM: Round [39] log likelihood: -33634.541683
EM: Round [40] log likelihood: -33634.230704
EM: Round [41] log likelihood: -33633.930279
EM: Round [42] log likelihood: -33633.639844
EM: Round [43] log likelihood: -33633.358873
EM: Round [44] log likelihood: -33633.086876
EM: Round [45] log likelihood: -33632.823398
EM: Round [46] log likelihood: -33632.568015
EM: Round [47] log likelihood: -33632.320331
EM: Round [48] log likelihood: -33632.079977
EM: Round [49] log likelihood: -33631.846609
EM: Round [50] log likelihood: -33631.619906
EM: Round [51] log likelihood: -33631.399564
EM: Round [52] log likelihood: -33631.185304
EM: Round [53] log likelihood: -33630.976861
EM: Round [54] log likelihood: -33630.773987
EM: Round [55] log likelihood: -33630.576449
EM: Round [56] log likelihood: -33630.384029
EM: Round [57] log likelihood: -33630.196522
EM: Round [58] log likelihood: -33630.013733
EM: Round [59] log likelihood: -33629.835480
EM: Round [60] log likelihood: -33629.661591
EM: Round [61] log likelihood: -33629.491902
EM: Round [62] log likelihood: -33629.326260
EM: Round [63] log likelihood: -33629.164519
EM: Round [64] log likelihood: -33629.006541
EM: Round [65] log likelihood: -33628.852194
EM: Round [66] log likelihood: -33628.701354
EM: Round [67] log likelihood: -33628.553902
EM: Round [68] log likelihood: -33628.409727
EM: Round [69] log likelihood: -33628.268720
EM: Round [70] log likelihood: -33628.130780
EM: Round [71] log likelihood: -33627.995809
EM: Round [72] log likelihood: -33627.863714
EM: Round [73] log likelihood: -33627.734406
EM: Round [74] log likelihood: -33627.607800
EM: Round [75] log likelihood: -33627.483815
EM: Round [76] log likelihood: -33627.362372
EM: Round [77] log likelihood: -33627.243398
EM: Round [78] log likelihood: -33627.126820
EM: Round [79] log likelihood: -33627.012570
EM: Round [80] log likelihood: -33626.900582
EM: Round [81] log likelihood: -33626.790792
EM: Round [82] log likelihood: -33626.683140
EM: Round [83] log likelihood: -33626.577566
EM: Round [84] log likelihood: -33626.474016
EM: Round [85] log likelihood: -33626.372433
EM: Round [86] log likelihood: -33626.272767
EM: Round [87] log likelihood: -33626.174966
EM: Round [88] log likelihood: -33626.078983
EM: Round [89] log likelihood: -33625.984769
EM: Round [90] log likelihood: -33625.892280
EM: Round [91] log likelihood: -33625.801473
EM: Round [92] log likelihood: -33625.712305
EM: Round [93] log likelihood: -33625.624735
EM: Round [94] log likelihood: -33625.538724
EM: Round [95] log likelihood: -33625.454234
EM: Round [96] log likelihood: -33625.371227
EM: Round [97] log likelihood: -33625.289670
EM: Round [98] log likelihood: -33625.209526
EM: Round [99] log likelihood: -33625.130762
EM: Round [100] log likelihood: -33625.053347
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EM: Round [564] log likelihood: -33619.029799
EM: Round [565] log likelihood: -33619.028752
EM: Round [566] log likelihood: -33619.027713
EM: Round [567] log likelihood: -33619.026680
EM: Round [568] log likelihood: -33619.025654
EM: Round [569] log likelihood: -33619.024634
EM: Round [570] log likelihood: -33619.023622
EM: Round [571] log likelihood: -33619.022615
EM: Round [572] log likelihood: -33619.021615
EM: Round [573] log likelihood: -33619.020622
EM: Round [574] log likelihood: -33619.019635
EM: Round [575] log likelihood: -33619.018654
EM: Round [576] log likelihood: -33619.017680
EM: Round [577] log likelihood: -33619.016712
EM: Round [578] log likelihood: -33619.015750
EM: Round [579] log likelihood: -33619.014795
EM: Round [580] log likelihood: -33619.013845
EM: Round [581] log likelihood: -33619.012902
EM: Round [582] log likelihood: -33619.011965
EM: Round [583] log likelihood: -33619.011033
EM: Round [584] log likelihood: -33619.010108
EM: Round [585] log likelihood: -33619.009189
EM: Round [586] log likelihood: -33619.008275
EM: Round [587] log likelihood: -33619.007367
EM: Round [588] log likelihood: -33619.006466
EM: Round [589] log likelihood: -33619.005570
EM: Round [590] log likelihood: -33619.004679
EM: Round [591] log likelihood: -33619.003795
EM: Round [592] log likelihood: -33619.002916
EM: Round [593] log likelihood: -33619.002042
EM: Round [594] log likelihood: -33619.001175
EM: Round [595] log likelihood: -33619.000312
EM: Round [596] log likelihood: -33618.999456
EM: Round [597] log likelihood: -33618.998604
EM: Round [598] log likelihood: -33618.997759
EM: Round [599] log likelihood: -33618.996918
EM: Round [600] log likelihood: -33618.996083
EM: Round [601] log likelihood: -33618.995253
EM: Round [602] log likelihood: -33618.994429
EM: Round [603] log likelihood: -33618.993609
EM: Round [604] log likelihood: -33618.992795
EM: Round [605] log likelihood: -33618.991986
EM: Round [606] log likelihood: -33618.991183
EM: Round [607] log likelihood: -33618.990384
EM: Round [608] log likelihood: -33618.989590
EM: Round [609] log likelihood: -33618.988802
EM: Round [610] log likelihood: -33618.988018
EM: Round [611] log likelihood: -33618.987239
EM: Round [612] log likelihood: -33618.986466
EM: Round [613] log likelihood: -33618.985697
EM: Round [614] log likelihood: -33618.984933
EM: Round [615] log likelihood: -33618.984174
EM: Round [616] log likelihood: -33618.983419
EM: Round [617] log likelihood: -33618.982670
EM: Round [618] log likelihood: -33618.981925
EM: Round [619] log likelihood: -33618.981184
EM: Round [620] log likelihood: -33618.980449
EM: Round [621] log likelihood: -33618.979718
EM: Round [622] log likelihood: -33618.978992
EM: Round [623] log likelihood: -33618.978270
EM: Round [624] log likelihood: -33618.977553
EM: Round [625] log likelihood: -33618.976840
EM: Round [626] log likelihood: -33618.976132
EM: Round [627] log likelihood: -33618.975428
EM: Round [628] log likelihood: -33618.974729
EM: Round [629] log likelihood: -33618.974034
EM: Round [630] log likelihood: -33618.973343
EM: Round [631] log likelihood: -33618.972657
EM: Round [632] log likelihood: -33618.971975
EM: Round [633] log likelihood: -33618.971297
EM: Round [634] log likelihood: -33618.970623
EM: Round [635] log likelihood: -33618.969954
EM: Round [636] log likelihood: -33618.969289
EM: Round [637] log likelihood: -33618.968628
EM: Round [638] log likelihood: -33618.967971
EM: Round [639] log likelihood: -33618.967319
EM: Round [640] log likelihood: -33618.966670
EM: Round [641] log likelihood: -33618.966025
EM: Round [642] log likelihood: -33618.965385
EM: Round [643] log likelihood: -33618.964748
EM: Round [644] log likelihood: -33618.964116
EM: Round [645] log likelihood: -33618.963487
EM: Round [646] log likelihood: -33618.962862
EM: Round [647] log likelihood: -33618.962241
EM: Round [648] log likelihood: -33618.961624
EM: Round [649] log likelihood: -33618.961011
EM: Round [650] log likelihood: -33618.960401
EM: Round [651] log likelihood: -33618.959796
EM: Round [652] log likelihood: -33618.959194
EM: Round [653] log likelihood: -33618.958596
EM: Round [654] log likelihood: -33618.958001
EM: Round [655] log likelihood: -33618.957411
EM: Round [656] log likelihood: -33618.956824
EM: Round [657] log likelihood: -33618.956240
EM: Round [658] log likelihood: -33618.955660
EM: Round [659] log likelihood: -33618.955084
EM: Round [660] log likelihood: -33618.954511
EM: Round [661] log likelihood: -33618.953942
EM: Round [662] log likelihood: -33618.953376
EM: Round [663] log likelihood: -33618.952814
EM: Round [664] log likelihood: -33618.952256
EM: Round [665] log likelihood: -33618.951700
EM: Round [666] log likelihood: -33618.951148
EM: Round [667] log likelihood: -33618.950600
EM: Round [668] log likelihood: -33618.950055
EM: Round [669] log likelihood: -33618.949513
EM: Round [670] log likelihood: -33618.948975
EM: Round [671] log likelihood: -33618.948440
EM: Round [672] log likelihood: -33618.947908
EM: Round [673] log likelihood: -33618.947380
EM: Round [674] log likelihood: -33618.946854
EM: Round [675] log likelihood: -33618.946332
EM: Round [676] log likelihood: -33618.945813
EM: Round [677] log likelihood: -33618.945298
EM: Round [678] log likelihood: -33618.944785
EM: Round [679] log likelihood: -33618.944276
EM: Round [680] log likelihood: -33618.943770
EM: Round [681] log likelihood: -33618.943267
EM: Round [682] log likelihood: -33618.942767
EM: Round [683] log likelihood: -33618.942270
EM: Round [684] log likelihood: -33618.941776
EM: Round [685] log likelihood: -33618.941285
EM: Round [686] log likelihood: -33618.940797
EM: Round [687] log likelihood: -33618.940312
EM: Round [688] log likelihood: -33618.939830
EM: Round [689] log likelihood: -33618.939351
EM: Round [690] log likelihood: -33618.938875
EM: Round [691] log likelihood: -33618.938402
EM: Round [692] log likelihood: -33618.937931
EM: Round [693] log likelihood: -33618.937464
EM: Round [694] log likelihood: -33618.936999
EM: Round [695] log likelihood: -33618.936537
EM: Round [696] log likelihood: -33618.936078
EM: Round [697] log likelihood: -33618.935622
EM: Round [698] log likelihood: -33618.935169
EM: Round [699] log likelihood: -33618.934718
EM: Round [700] log likelihood: -33618.934270
EM: Round [701] log likelihood: -33618.933825
EM: Round [702] log likelihood: -33618.933382
EM: Round [703] log likelihood: -33618.932943
EM: Round [704] log likelihood: -33618.932505
EM: Round [705] log likelihood: -33618.932071
EM: Round [706] log likelihood: -33618.931639
EM: Round [707] log likelihood: -33618.931210
EM: Round [708] log likelihood: -33618.930783
EM: Round [709] log likelihood: -33618.930359
EM: Round [710] log likelihood: -33618.929937
EM: Round [711] log likelihood: -33618.929518
EM: Round [712] log likelihood: -33618.929102
EM: Round [713] log likelihood: -33618.928688
EM: Round [714] log likelihood: -33618.928277
EM: Round [715] log likelihood: -33618.927868
EM: Round [716] log likelihood: -33618.927461
EM: Round [717] log likelihood: -33618.927057
EM: Round [718] log likelihood: -33618.926656
EM: Round [719] log likelihood: -33618.926257
EM: Round [720] log likelihood: -33618.925860
EM: Round [721] log likelihood: -33618.925465
EM: Round [722] log likelihood: -33618.925073
EM: Round [723] log likelihood: -33618.924684
EM: Round [724] log likelihood: -33618.924296
EM: Round [725] log likelihood: -33618.923912
EM: Round [726] log likelihood: -33618.923529
EM: Round [727] log likelihood: -33618.923149
EM: Round [728] log likelihood: -33618.922770
EM: Round [729] log likelihood: -33618.922395
EM: Round [730] log likelihood: -33618.922021
EM: Round [731] log likelihood: -33618.921650
EM: Round [732] log likelihood: -33618.921281
EM: Round [733] log likelihood: -33618.920914
EM: Round [734] log likelihood: -33618.920549
EM: Round [735] log likelihood: -33618.920187
EM: Round [736] log likelihood: -33618.919826
EM: Round [737] log likelihood: -33618.919468
EM: Round [738] log likelihood: -33618.919112
EM: Round [739] log likelihood: -33618.918758
EM: Round [740] log likelihood: -33618.918407
EM: Round [741] log likelihood: -33618.918057
EM: Round [742] log likelihood: -33618.917709
EM: Round [743] log likelihood: -33618.917364
EM: Round [744] log likelihood: -33618.917020
EM: Round [745] log likelihood: -33618.916679
EM: Round [746] log likelihood: -33618.916340
EM: Round [747] log likelihood: -33618.916002
EM: Round [748] log likelihood: -33618.915667
EM: Round [749] log likelihood: -33618.915334
EM: Round [750] log likelihood: -33618.915002
EM: Round [751] log likelihood: -33618.914673
EM: Round [752] log likelihood: -33618.914346
EM: Round [753] log likelihood: -33618.914020
EM: Round [754] log likelihood: -33618.913697
EM: Round [755] log likelihood: -33618.913375
EM: Round [756] log likelihood: -33618.913055
EM: Round [757] log likelihood: -33618.912737
EM: Round [758] log likelihood: -33618.912422
EM: Round [759] log likelihood: -33618.912107
EM: Round [760] log likelihood: -33618.911795
EM: Round [761] log likelihood: -33618.911485
EM: Round [762] log likelihood: -33618.911176
EM: Round [763] log likelihood: -33618.910870
EM: Round [764] log likelihood: -33618.910565
EM: Round [765] log likelihood: -33618.910262
EM: Round [766] log likelihood: -33618.909961
EM: Round [767] log likelihood: -33618.909661
EM: Round [768] log likelihood: -33618.909364
EM: Round [769] log likelihood: -33618.909068
EM: Round [770] log likelihood: -33618.908773
EM: Round [771] log likelihood: -33618.908481
EM: Round [772] log likelihood: -33618.908190
EM: Round [773] log likelihood: -33618.907901
EM: Round [774] log likelihood: -33618.907614
EM: Round [775] log likelihood: -33618.907328
EM: Round [776] log likelihood: -33618.907044
EM: Round [777] log likelihood: -33618.906762
EM: Round [778] log likelihood: -33618.906482
EM: Round [779] log likelihood: -33618.906203
EM: Round [780] log likelihood: -33618.905925
EM: Round [781] log likelihood: -33618.905650
EM: Round [782] log likelihood: -33618.905376
EM: Round [783] log likelihood: -33618.905103
EM: Round [784] log likelihood: -33618.904833
EM: Round [785] log likelihood: -33618.904563
EM: Round [786] log likelihood: -33618.904296
EM: Round [787] log likelihood: -33618.904030
EM: Round [788] log likelihood: -33618.903765
EM: Round [789] log likelihood: -33618.903502
EM: Round [790] log likelihood: -33618.903241
EM: Round [791] log likelihood: -33618.902981
EM: Round [792] log likelihood: -33618.902723
EM: Round [793] log likelihood: -33618.902466
EM: Round [794] log likelihood: -33618.902210
EM: Round [795] log likelihood: -33618.901956
EM: Round [796] log likelihood: -33618.901704
EM: Round [797] log likelihood: -33618.901453
EM: Round [798] log likelihood: -33618.901204
EM: Round [799] log likelihood: -33618.900956
EM: Round [800] log likelihood: -33618.900709
EM: Round [801] log likelihood: -33618.900464
EM: Round [802] log likelihood: -33618.900221
EM: Round [803] log likelihood: -33618.899979
EM: Round [804] log likelihood: -33618.899738
EM: Round [805] log likelihood: -33618.899498
EM: Round [806] log likelihood: -33618.899260
EM: Round [807] log likelihood: -33618.899024
EM: Round [808] log likelihood: -33618.898789
EM: Round [809] log likelihood: -33618.898555
EM: Round [810] log likelihood: -33618.898322
EM: Round [811] log likelihood: -33618.898091
EM: Round [812] log likelihood: -33618.897861
EM: Round [813] log likelihood: -33618.897633
EM: Round [814] log likelihood: -33618.897406
EM: Round [815] log likelihood: -33618.897180
EM: Round [816] log likelihood: -33618.896955
EM: Round [817] log likelihood: -33618.896732
EM: Round [818] log likelihood: -33618.896510
EM: Round [819] log likelihood: -33618.896290
EM: Round [820] log likelihood: -33618.896070
EM: Round [821] log likelihood: -33618.895852
EM: Round [822] log likelihood: -33618.895636
EM: Round [823] log likelihood: -33618.895420
EM: Round [824] log likelihood: -33618.895206
EM: Round [825] log likelihood: -33618.894993
EM: Round [826] log likelihood: -33618.894781
EM: Round [827] log likelihood: -33618.894570
EM: Round [828] log likelihood: -33618.894361
EM: Round [829] log likelihood: -33618.894153
EM: Round [830] log likelihood: -33618.893946
EM: Round [831] log likelihood: -33618.893740
EM: Round [832] log likelihood: -33618.893536
EM: Round [833] log likelihood: -33618.893332
EM: Round [834] log likelihood: -33618.893130
EM: Round [835] log likelihood: -33618.892929
EM: Round [836] log likelihood: -33618.892729
EM: Round [837] log likelihood: -33618.892531
EM: Round [838] log likelihood: -33618.892333
EM: Round [839] log likelihood: -33618.892137
EM: Round [840] log likelihood: -33618.891941
EM: Round [841] log likelihood: -33618.891747
EM: Round [842] log likelihood: -33618.891554
EM: Round [843] log likelihood: -33618.891362
EM: Round [844] log likelihood: -33618.891171
EM: Round [845] log likelihood: -33618.890982
EM: Round [846] log likelihood: -33618.890793
EM: Round [847] log likelihood: -33618.890605
EM: Round [848] log likelihood: -33618.890419
EM: Round [849] log likelihood: -33618.890234
EM: Round [850] log likelihood: -33618.890049
EM: Round [851] log likelihood: -33618.889866
EM: Round [852] log likelihood: -33618.889684
EM: Round [853] log likelihood: -33618.889503
EM: Round [854] log likelihood: -33618.889322
EM: Round [855] log likelihood: -33618.889143
EM: Round [856] log likelihood: -33618.888965
EM: Round [857] log likelihood: -33618.888788
EM: Round [858] log likelihood: -33618.888612
EM: Round [859] log likelihood: -33618.888437
EM: Round [860] log likelihood: -33618.888263
EM: Round [861] log likelihood: -33618.888090
EM: Round [862] log likelihood: -33618.887918
EM: Round [863] log likelihood: -33618.887747
EM: Round [864] log likelihood: -33618.887577
EM: Round [865] log likelihood: -33618.887408
EM: Round [866] log likelihood: -33618.887240
EM: Round [867] log likelihood: -33618.887072
EM: Round [868] log likelihood: -33618.886906
EM: Round [869] log likelihood: -33618.886741
EM: Round [870] log likelihood: -33618.886577
EM: Round [871] log likelihood: -33618.886413
EM: Round [872] log likelihood: -33618.886251
EM: Round [873] log likelihood: -33618.886089
EM: Round [874] log likelihood: -33618.885929
EM: Round [875] log likelihood: -33618.885769
EM: Round [876] log likelihood: -33618.885610
EM: Round [877] log likelihood: -33618.885452
EM: Round [878] log likelihood: -33618.885295
EM: Round [879] log likelihood: -33618.885139
EM: Round [880] log likelihood: -33618.884984
EM: Round [881] log likelihood: -33618.884830
EM: Round [882] log likelihood: -33618.884676
EM: Round [883] log likelihood: -33618.884524
EM: Round [884] log likelihood: -33618.884372
EM: Round [885] log likelihood: -33618.884221
EM: Round [886] log likelihood: -33618.884071
EM: Round [887] log likelihood: -33618.883922
EM: Round [888] log likelihood: -33618.883774
EM: Round [889] log likelihood: -33618.883627
EM: Round [890] log likelihood: -33618.883480
EM: Round [891] log likelihood: -33618.883334
EM: Round [892] log likelihood: -33618.883189
EM: Round [893] log likelihood: -33618.883045
EM: Round [894] log likelihood: -33618.882902
EM: Round [895] log likelihood: -33618.882759
EM: Round [896] log likelihood: -33618.882618
EM: Round [897] log likelihood: -33618.882477
EM: Round [898] log likelihood: -33618.882337
EM: Round [899] log likelihood: -33618.882198
EM: Round [900] log likelihood: -33618.882059
EM: Round [901] log likelihood: -33618.881921
EM: Round [902] log likelihood: -33618.881784
EM: Round [903] log likelihood: -33618.881648
EM: Round [904] log likelihood: -33618.881513
EM: Round [905] log likelihood: -33618.881378
EM: Round [906] log likelihood: -33618.881244
EM: Round [907] log likelihood: -33618.881111
EM: Round [908] log likelihood: -33618.880979
EM: Round [909] log likelihood: -33618.880847
EM: Round [910] log likelihood: -33618.880716
EM: Round [911] log likelihood: -33618.880586
EM: Round [912] log likelihood: -33618.880457
EM: Round [913] log likelihood: -33618.880328
EM: Round [914] log likelihood: -33618.880200
EM: Round [915] log likelihood: -33618.880073
EM: Round [916] log likelihood: -33618.879947
EM: Round [917] log likelihood: -33618.879821
EM: Round [918] log likelihood: -33618.879696
EM: Round [919] log likelihood: -33618.879571
EM: Round [920] log likelihood: -33618.879448
EM: Round [921] log likelihood: -33618.879325
EM: Round [922] log likelihood: -33618.879202
EM: Round [923] log likelihood: -33618.879081
EM: Round [924] log likelihood: -33618.878960
EM: Round [925] log likelihood: -33618.878840
EM: Round [926] log likelihood: -33618.878720
EM: Round [927] log likelihood: -33618.878601
EM: Round [928] log likelihood: -33618.878483
EM: Round [929] log likelihood: -33618.878365
EM: Round [930] log likelihood: -33618.878249
EM: Round [931] log likelihood: -33618.878132
EM: Round [932] log likelihood: -33618.878017
EM: Round [933] log likelihood: -33618.877902
EM: Round [934] log likelihood: -33618.877787
EM: Round [935] log likelihood: -33618.877674
EM: Round [936] log likelihood: -33618.877561
EM: Round [937] log likelihood: -33618.877448
EM: Round [938] log likelihood: -33618.877337
EM: Round [939] log likelihood: -33618.877225
EM: Round [940] log likelihood: -33618.877115
EM: Round [941] log likelihood: -33618.877005
EM: Round [942] log likelihood: -33618.876896
EM: Round [943] log likelihood: -33618.876787
EM: Round [944] log likelihood: -33618.876679
EM: Round [945] log likelihood: -33618.876572
EM: Round [946] log likelihood: -33618.876465
EM: Round [947] log likelihood: -33618.876358
EM: Round [948] log likelihood: -33618.876253
EM: Round [949] log likelihood: -33618.876148
EM: Round [950] log likelihood: -33618.876043
EM: Round [951] log likelihood: -33618.875939
EM: Round [952] log likelihood: -33618.875836
EM: Round [953] log likelihood: -33618.875733
EM: Round [954] log likelihood: -33618.875631
EM: Round [955] log likelihood: -33618.875529
EM: Round [956] log likelihood: -33618.875428
EM: Round [957] log likelihood: -33618.875328
EM: Round [958] log likelihood: -33618.875228
EM: Stopping iterations at round 958 due to insufficient improvement in likelihood.
[bam_sort_core] merging from 0 files and 8 in-memory blocks...
-extracting read coordinates from /tmp/nxf.6yEE1rtDOQ/659_zO-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam into /tmp/nxf.6yEE1rtDOQ/659_zO-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam.read_coords

CMD: touch /tmp/nxf.6yEE1rtDOQ/659_zO-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam.read_coords.ok
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k2,2 -k4,4n /tmp/nxf.6yEE1rtDOQ/659_zO-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam.read_coords > /tmp/nxf.6yEE1rtDOQ/659_zO-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam.read_coords.sort_by_readname
CMD: /usr/bin/sort --parallel=1 -S10G -T . -k1,1 -k3,3n /tmp/nxf.6yEE1rtDOQ/659_zO-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam.frag_coords > /tmp/nxf.6yEE1rtDOQ/659_zO-T1-TRNA-1_B23MHV2LT4_1.consolidated.bam.frag_coords.coord_sorted
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.6yEE1rtDOQ/fi_workdir/659_zO-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo --genome_lib_dir ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionInspector/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.6yEE1rtDOQ/fi_workdir/659_zO-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter  --genome_lib_dir ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 50 
CMD: cp /tmp/nxf.6yEE1rtDOQ/fi_workdir/659_zO-T1-TRNA-1_B23MHV2LT4_1.fusion_preds.coalesced.summary.EMadj.min_frag_thresh.wSpliceInfo.post_blast_filter.post_promisc_filter /tmp/nxf.6yEE1rtDOQ/659_zO-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter
-done, see /tmp/nxf.6yEE1rtDOQ/659_zO-T1-TRNA-1_B23MHV2LT4_1.post_blast_and_promiscuity_filter.annot_filter.pass
EM: Starting log likelihood: -23654.364574
EM: Round [1] log likelihood: -23653.406669
EM: Round [2] log likelihood: -23653.405700
EM: Round [3] log likelihood: -23653.405691
EM: Stopping iterations at round 3 due to insufficient improvement in likelihood.
-total frags in /tmp/nxf.6yEE1rtDOQ/659_zO-T1-TRNA-1_B23MHV2LT4_1_1.fastp.fastq.gz: 296392849
Warning - not locating file: /tmp/nxf.6yEE1rtDOQ/659_zO-T1-TRNA-1_B23MHV2LT4_1.gmap_trinity_GG.fusions.gff3.bed
WARNING, no entry stored in dbm for [ENSG00000273598.1]
WARNING, no entry stored in dbm for [ENSG00000273598.1]
WARNING, no entry stored in dbm for [ENSG00000239268.3]
WARNING, no entry stored in dbm for [ENSG00000239268.3]
WARNING, no entry stored in dbm for [ENSG00000224745.1]
WARNING, no entry stored in dbm for [ENSG00000224745.1]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000241621.1]
WARNING, no entry stored in dbm for [ENSG00000241621.1]
WARNING, no entry stored in dbm for [ENSG00000275389.1]
WARNING, no entry stored in dbm for [ENSG00000281731.3]
WARNING, no entry stored in dbm for [ENSG00000281731.3]
WARNING, no entry stored in dbm for [ENSG00000281731.3]
WARNING, no entry stored in dbm for [ENSG00000281731.3]
ls: cannot access 'IGV_inputs': No such file or directory