File Info

Filename
samplesheet_input.csv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/4bc031af960524d270f2e27afe0618/samplesheet_input.csv
Size
78.4 KB
Task
NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet)
Attempt

Content

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normal_sample_id,normal_sample_bam,normal_sample_bai,tumor_sample_id,tumor_sample_bam,tumor_sample_bai,id,germline_cnv_model
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0001_gDNA_0001_235YY7LT3_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260203_LH00527_0049_A235YY7LT3__5d8e7d70--20260228-200337/alignments/recalibrated/NA12878_c_0001_gDNA_0001_235YY7LT3_1/NA12878_c_0001_gDNA_0001_235YY7LT3_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260203_LH00527_0049_A235YY7LT3__5d8e7d70--20260228-200337/alignments/recalibrated/NA12878_c_0001_gDNA_0001_235YY7LT3_1/NA12878_c_0001_gDNA_0001_235YY7LT3_1.recalibrated.bam.bai,neg_somatic_000,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0001_gDNA_0001_2375WFLT3_s92,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20251222_LH00527_0042_A2375WFLT3__5d8e7d70--20260228-200339/alignments/recalibrated/NA12878_c_0001_gDNA_0001_2375WFLT3_s92/NA12878_c_0001_gDNA_0001_2375WFLT3_s92.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20251222_LH00527_0042_A2375WFLT3__5d8e7d70--20260228-200339/alignments/recalibrated/NA12878_c_0001_gDNA_0001_2375WFLT3_s92/NA12878_c_0001_gDNA_0001_2375WFLT3_s92.recalibrated.bam.bai,neg_somatic_001,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0001_gDNA_0001_B23H2H2LT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20251215_LH00166_0222_B23H2H2LT4__c669fb6c--20260304-055747/alignments/recalibrated/NA12878_c_0001_gDNA_0001_B23H2H2LT4_1/NA12878_c_0001_gDNA_0001_B23H2H2LT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20251215_LH00166_0222_B23H2H2LT4__c669fb6c--20260304-055747/alignments/recalibrated/NA12878_c_0001_gDNA_0001_B23H2H2LT4_1/NA12878_c_0001_gDNA_0001_B23H2H2LT4_1.recalibrated.bam.bai,neg_somatic_002,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0001_gDNA_0001_B23H2H2LT4_2,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20251215_LH00166_0222_B23H2H2LT4__c669fb6c--20260304-055747/alignments/recalibrated/NA12878_c_0001_gDNA_0001_B23H2H2LT4_2/NA12878_c_0001_gDNA_0001_B23H2H2LT4_2.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20251215_LH00166_0222_B23H2H2LT4__c669fb6c--20260304-055747/alignments/recalibrated/NA12878_c_0001_gDNA_0001_B23H2H2LT4_2/NA12878_c_0001_gDNA_0001_B23H2H2LT4_2.recalibrated.bam.bai,neg_somatic_003,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0001_gDNA_0001_B23H2H2LT4_3,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20251215_LH00166_0222_B23H2H2LT4__c669fb6c--20260304-055747/alignments/recalibrated/NA12878_c_0001_gDNA_0001_B23H2H2LT4_3/NA12878_c_0001_gDNA_0001_B23H2H2LT4_3.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20251215_LH00166_0222_B23H2H2LT4__c669fb6c--20260304-055747/alignments/recalibrated/NA12878_c_0001_gDNA_0001_B23H2H2LT4_3/NA12878_c_0001_gDNA_0001_B23H2H2LT4_3.recalibrated.bam.bai,neg_somatic_004,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0001_gDNA_0001_B23H2H2LT4_4,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20251215_LH00166_0222_B23H2H2LT4__c669fb6c--20260304-055747/alignments/recalibrated/NA12878_c_0001_gDNA_0001_B23H2H2LT4_4/NA12878_c_0001_gDNA_0001_B23H2H2LT4_4.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20251215_LH00166_0222_B23H2H2LT4__c669fb6c--20260304-055747/alignments/recalibrated/NA12878_c_0001_gDNA_0001_B23H2H2LT4_4/NA12878_c_0001_gDNA_0001_B23H2H2LT4_4.recalibrated.bam.bai,neg_somatic_005,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0001_gDNA_0001_B23H2H2LT4_5,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20251215_LH00166_0222_B23H2H2LT4__c669fb6c--20260304-055747/alignments/recalibrated/NA12878_c_0001_gDNA_0001_B23H2H2LT4_5/NA12878_c_0001_gDNA_0001_B23H2H2LT4_5.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20251215_LH00166_0222_B23H2H2LT4__c669fb6c--20260304-055747/alignments/recalibrated/NA12878_c_0001_gDNA_0001_B23H2H2LT4_5/NA12878_c_0001_gDNA_0001_B23H2H2LT4_5.recalibrated.bam.bai,neg_somatic_006,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0001_gDNA_0001_B23H2H2LT4_6,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20251215_LH00166_0222_B23H2H2LT4__c669fb6c--20260304-055747/alignments/recalibrated/NA12878_c_0001_gDNA_0001_B23H2H2LT4_6/NA12878_c_0001_gDNA_0001_B23H2H2LT4_6.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20251215_LH00166_0222_B23H2H2LT4__c669fb6c--20260304-055747/alignments/recalibrated/NA12878_c_0001_gDNA_0001_B23H2H2LT4_6/NA12878_c_0001_gDNA_0001_B23H2H2LT4_6.recalibrated.bam.bai,neg_somatic_007,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0001_gDNA_0001_B23H3Y2LT3_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260309_LH00166_0264_B23H3Y2LT3__5d7f62c6--20260311-041011/alignments/recalibrated/NA12878_c_0001_gDNA_0001_B23H3Y2LT3_1/NA12878_c_0001_gDNA_0001_B23H3Y2LT3_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260309_LH00166_0264_B23H3Y2LT3__5d7f62c6--20260311-041011/alignments/recalibrated/NA12878_c_0001_gDNA_0001_B23H3Y2LT3_1/NA12878_c_0001_gDNA_0001_B23H3Y2LT3_1.recalibrated.bam.bai,neg_somatic_008,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0001_A23KFG7LT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260320_LH00519_0072_A23KFG7LT4__d7a6b981--20260322-104015/alignments/recalibrated/NA12878_c_0002_gDNA_0001_A23KFG7LT4_1/NA12878_c_0002_gDNA_0001_A23KFG7LT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260320_LH00519_0072_A23KFG7LT4__d7a6b981--20260322-104015/alignments/recalibrated/NA12878_c_0002_gDNA_0001_A23KFG7LT4_1/NA12878_c_0002_gDNA_0001_A23KFG7LT4_1.recalibrated.bam.bai,neg_somatic_009,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0001_A23MHW3LT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260311_LH00519_0064_A23MHW3LT4__5d7f62c6--20260313-122016/alignments/recalibrated/NA12878_c_0002_gDNA_0001_A23MHW3LT4_1/NA12878_c_0002_gDNA_0001_A23MHW3LT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260311_LH00519_0064_A23MHW3LT4__5d7f62c6--20260313-122016/alignments/recalibrated/NA12878_c_0002_gDNA_0001_A23MHW3LT4_1/NA12878_c_0002_gDNA_0001_A23MHW3LT4_1.recalibrated.bam.bai,neg_somatic_010,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0001_B23KGCJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260320_LH00527_0067_B23KGCJLT4__d7a6b981--20260322-105015/alignments/recalibrated/NA12878_c_0002_gDNA_0001_B23KGCJLT4_1/NA12878_c_0002_gDNA_0001_B23KGCJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260320_LH00527_0067_B23KGCJLT4__d7a6b981--20260322-105015/alignments/recalibrated/NA12878_c_0002_gDNA_0001_B23KGCJLT4_1/NA12878_c_0002_gDNA_0001_B23KGCJLT4_1.recalibrated.bam.bai,neg_somatic_011,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0001_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0001_B23KYWJLT4_1/NA12878_c_0002_gDNA_0001_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0001_B23KYWJLT4_1/NA12878_c_0002_gDNA_0001_B23KYWJLT4_1.recalibrated.bam.bai,neg_somatic_012,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0001_B23L5TMLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260227_LH00519_0059_B23L5TMLT4__444aee1e--20260301-135529/alignments/recalibrated/NA12878_c_0002_gDNA_0001_B23L5TMLT4_1/NA12878_c_0002_gDNA_0001_B23L5TMLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260227_LH00519_0059_B23L5TMLT4__444aee1e--20260301-135529/alignments/recalibrated/NA12878_c_0002_gDNA_0001_B23L5TMLT4_1/NA12878_c_0002_gDNA_0001_B23L5TMLT4_1.recalibrated.bam.bai,neg_somatic_013,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0001_B23MHTGLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260311_LH00519_0063_B23MHTGLT4__5d7f62c6--20260313-121014/alignments/recalibrated/NA12878_c_0002_gDNA_0001_B23MHTGLT4_1/NA12878_c_0002_gDNA_0001_B23MHTGLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260311_LH00519_0063_B23MHTGLT4__5d7f62c6--20260313-121014/alignments/recalibrated/NA12878_c_0002_gDNA_0001_B23MHTGLT4_1/NA12878_c_0002_gDNA_0001_B23MHTGLT4_1.recalibrated.bam.bai,neg_somatic_014,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0002_A23KFG7LT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260320_LH00519_0072_A23KFG7LT4__d7a6b981--20260322-104015/alignments/recalibrated/NA12878_c_0002_gDNA_0002_A23KFG7LT4_1/NA12878_c_0002_gDNA_0002_A23KFG7LT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260320_LH00519_0072_A23KFG7LT4__d7a6b981--20260322-104015/alignments/recalibrated/NA12878_c_0002_gDNA_0002_A23KFG7LT4_1/NA12878_c_0002_gDNA_0002_A23KFG7LT4_1.recalibrated.bam.bai,neg_somatic_015,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0002_A23KFG7LT4_2,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260320_LH00519_0072_A23KFG7LT4__d7a6b981--20260322-104015/alignments/recalibrated/NA12878_c_0002_gDNA_0002_A23KFG7LT4_2/NA12878_c_0002_gDNA_0002_A23KFG7LT4_2.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260320_LH00519_0072_A23KFG7LT4__d7a6b981--20260322-104015/alignments/recalibrated/NA12878_c_0002_gDNA_0002_A23KFG7LT4_2/NA12878_c_0002_gDNA_0002_A23KFG7LT4_2.recalibrated.bam.bai,neg_somatic_016,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0002_A23MHW3LT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260311_LH00519_0064_A23MHW3LT4__5d7f62c6--20260313-122016/alignments/recalibrated/NA12878_c_0002_gDNA_0002_A23MHW3LT4_1/NA12878_c_0002_gDNA_0002_A23MHW3LT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260311_LH00519_0064_A23MHW3LT4__5d7f62c6--20260313-122016/alignments/recalibrated/NA12878_c_0002_gDNA_0002_A23MHW3LT4_1/NA12878_c_0002_gDNA_0002_A23MHW3LT4_1.recalibrated.bam.bai,neg_somatic_017,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0002_B23KGCJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260320_LH00527_0067_B23KGCJLT4__d7a6b981--20260322-105015/alignments/recalibrated/NA12878_c_0002_gDNA_0002_B23KGCJLT4_1/NA12878_c_0002_gDNA_0002_B23KGCJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260320_LH00527_0067_B23KGCJLT4__d7a6b981--20260322-105015/alignments/recalibrated/NA12878_c_0002_gDNA_0002_B23KGCJLT4_1/NA12878_c_0002_gDNA_0002_B23KGCJLT4_1.recalibrated.bam.bai,neg_somatic_018,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0002_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0002_B23KYWJLT4_1/NA12878_c_0002_gDNA_0002_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0002_B23KYWJLT4_1/NA12878_c_0002_gDNA_0002_B23KYWJLT4_1.recalibrated.bam.bai,neg_somatic_019,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0002_B23MHTGLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260311_LH00519_0063_B23MHTGLT4__5d7f62c6--20260313-121014/alignments/recalibrated/NA12878_c_0002_gDNA_0002_B23MHTGLT4_1/NA12878_c_0002_gDNA_0002_B23MHTGLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260311_LH00519_0063_B23MHTGLT4__5d7f62c6--20260313-121014/alignments/recalibrated/NA12878_c_0002_gDNA_0002_B23MHTGLT4_1/NA12878_c_0002_gDNA_0002_B23MHTGLT4_1.recalibrated.bam.bai,neg_somatic_020,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0003_A23KFG7LT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260320_LH00519_0072_A23KFG7LT4__d7a6b981--20260322-104015/alignments/recalibrated/NA12878_c_0002_gDNA_0003_A23KFG7LT4_1/NA12878_c_0002_gDNA_0003_A23KFG7LT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260320_LH00519_0072_A23KFG7LT4__d7a6b981--20260322-104015/alignments/recalibrated/NA12878_c_0002_gDNA_0003_A23KFG7LT4_1/NA12878_c_0002_gDNA_0003_A23KFG7LT4_1.recalibrated.bam.bai,neg_somatic_021,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0003_B23KGCJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260320_LH00527_0067_B23KGCJLT4__d7a6b981--20260322-105015/alignments/recalibrated/NA12878_c_0002_gDNA_0003_B23KGCJLT4_1/NA12878_c_0002_gDNA_0003_B23KGCJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260320_LH00527_0067_B23KGCJLT4__d7a6b981--20260322-105015/alignments/recalibrated/NA12878_c_0002_gDNA_0003_B23KGCJLT4_1/NA12878_c_0002_gDNA_0003_B23KGCJLT4_1.recalibrated.bam.bai,neg_somatic_022,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0003_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0003_B23KYWJLT4_1/NA12878_c_0002_gDNA_0003_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0003_B23KYWJLT4_1/NA12878_c_0002_gDNA_0003_B23KYWJLT4_1.recalibrated.bam.bai,neg_somatic_023,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0004_B23KGCJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260320_LH00527_0067_B23KGCJLT4__d7a6b981--20260322-105015/alignments/recalibrated/NA12878_c_0002_gDNA_0004_B23KGCJLT4_1/NA12878_c_0002_gDNA_0004_B23KGCJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260320_LH00527_0067_B23KGCJLT4__d7a6b981--20260322-105015/alignments/recalibrated/NA12878_c_0002_gDNA_0004_B23KGCJLT4_1/NA12878_c_0002_gDNA_0004_B23KGCJLT4_1.recalibrated.bam.bai,neg_somatic_024,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0004_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0004_B23KYWJLT4_1/NA12878_c_0002_gDNA_0004_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0004_B23KYWJLT4_1/NA12878_c_0002_gDNA_0004_B23KYWJLT4_1.recalibrated.bam.bai,neg_somatic_025,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0005_B23KFG5LT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260323_LH00519_0074_B23KFG5LT4__d7a6b981--20260325-091021/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KFG5LT4_1/NA12878_c_0002_gDNA_0005_B23KFG5LT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260323_LH00519_0074_B23KFG5LT4__d7a6b981--20260325-091021/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KFG5LT4_1/NA12878_c_0002_gDNA_0005_B23KFG5LT4_1.recalibrated.bam.bai,neg_somatic_026,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0006_B23KFG5LT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260323_LH00519_0074_B23KFG5LT4__d7a6b981--20260325-091021/alignments/recalibrated/NA12878_c_0002_gDNA_0006_B23KFG5LT4_1/NA12878_c_0002_gDNA_0006_B23KFG5LT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260323_LH00519_0074_B23KFG5LT4__d7a6b981--20260325-091021/alignments/recalibrated/NA12878_c_0002_gDNA_0006_B23KFG5LT4_1/NA12878_c_0002_gDNA_0006_B23KFG5LT4_1.recalibrated.bam.bai,neg_somatic_027,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0006_B23L5TMLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260227_LH00519_0059_B23L5TMLT4__444aee1e--20260301-135529/alignments/recalibrated/NA12878_c_0002_gDNA_0006_B23L5TMLT4_1/NA12878_c_0002_gDNA_0006_B23L5TMLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260227_LH00519_0059_B23L5TMLT4__444aee1e--20260301-135529/alignments/recalibrated/NA12878_c_0002_gDNA_0006_B23L5TMLT4_1/NA12878_c_0002_gDNA_0006_B23L5TMLT4_1.recalibrated.bam.bai,neg_somatic_028,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0007_A23MHW3LT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260311_LH00519_0064_A23MHW3LT4__5d7f62c6--20260313-122016/alignments/recalibrated/NA12878_c_0002_gDNA_0007_A23MHW3LT4_1/NA12878_c_0002_gDNA_0007_A23MHW3LT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260311_LH00519_0064_A23MHW3LT4__5d7f62c6--20260313-122016/alignments/recalibrated/NA12878_c_0002_gDNA_0007_A23MHW3LT4_1/NA12878_c_0002_gDNA_0007_A23MHW3LT4_1.recalibrated.bam.bai,neg_somatic_029,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0007_B23KFG5LT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260323_LH00519_0074_B23KFG5LT4__d7a6b981--20260325-091021/alignments/recalibrated/NA12878_c_0002_gDNA_0007_B23KFG5LT4_1/NA12878_c_0002_gDNA_0007_B23KFG5LT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260323_LH00519_0074_B23KFG5LT4__d7a6b981--20260325-091021/alignments/recalibrated/NA12878_c_0002_gDNA_0007_B23KFG5LT4_1/NA12878_c_0002_gDNA_0007_B23KFG5LT4_1.recalibrated.bam.bai,neg_somatic_030,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0007_B23L5TMLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260227_LH00519_0059_B23L5TMLT4__444aee1e--20260301-135529/alignments/recalibrated/NA12878_c_0002_gDNA_0007_B23L5TMLT4_1/NA12878_c_0002_gDNA_0007_B23L5TMLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260227_LH00519_0059_B23L5TMLT4__444aee1e--20260301-135529/alignments/recalibrated/NA12878_c_0002_gDNA_0007_B23L5TMLT4_1/NA12878_c_0002_gDNA_0007_B23L5TMLT4_1.recalibrated.bam.bai,neg_somatic_031,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0007_B23MHTGLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260311_LH00519_0063_B23MHTGLT4__5d7f62c6--20260313-121014/alignments/recalibrated/NA12878_c_0002_gDNA_0007_B23MHTGLT4_1/NA12878_c_0002_gDNA_0007_B23MHTGLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260311_LH00519_0063_B23MHTGLT4__5d7f62c6--20260313-121014/alignments/recalibrated/NA12878_c_0002_gDNA_0007_B23MHTGLT4_1/NA12878_c_0002_gDNA_0007_B23MHTGLT4_1.recalibrated.bam.bai,neg_somatic_032,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0008_A23MHW3LT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260311_LH00519_0064_A23MHW3LT4__5d7f62c6--20260313-122016/alignments/recalibrated/NA12878_c_0002_gDNA_0008_A23MHW3LT4_1/NA12878_c_0002_gDNA_0008_A23MHW3LT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260311_LH00519_0064_A23MHW3LT4__5d7f62c6--20260313-122016/alignments/recalibrated/NA12878_c_0002_gDNA_0008_A23MHW3LT4_1/NA12878_c_0002_gDNA_0008_A23MHW3LT4_1.recalibrated.bam.bai,neg_somatic_033,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0008_B23KFG5LT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260323_LH00519_0074_B23KFG5LT4__d7a6b981--20260325-091021/alignments/recalibrated/NA12878_c_0002_gDNA_0008_B23KFG5LT4_1/NA12878_c_0002_gDNA_0008_B23KFG5LT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260323_LH00519_0074_B23KFG5LT4__d7a6b981--20260325-091021/alignments/recalibrated/NA12878_c_0002_gDNA_0008_B23KFG5LT4_1/NA12878_c_0002_gDNA_0008_B23KFG5LT4_1.recalibrated.bam.bai,neg_somatic_034,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0008_B23MHTGLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260311_LH00519_0063_B23MHTGLT4__5d7f62c6--20260313-121014/alignments/recalibrated/NA12878_c_0002_gDNA_0008_B23MHTGLT4_1/NA12878_c_0002_gDNA_0008_B23MHTGLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260311_LH00519_0063_B23MHTGLT4__5d7f62c6--20260313-121014/alignments/recalibrated/NA12878_c_0002_gDNA_0008_B23MHTGLT4_1/NA12878_c_0002_gDNA_0008_B23MHTGLT4_1.recalibrated.bam.bai,neg_somatic_035,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0003_gDNA_0001_A23FG3YLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0021/20260113_LH00527_0046_A23FG3YLT4__aa3fd045--20260225-014632/alignments/recalibrated/NA12878_c_0003_gDNA_0001_A23FG3YLT4_1/NA12878_c_0003_gDNA_0001_A23FG3YLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0021/20260113_LH00527_0046_A23FG3YLT4__aa3fd045--20260225-014632/alignments/recalibrated/NA12878_c_0003_gDNA_0001_A23FG3YLT4_1/NA12878_c_0003_gDNA_0001_A23FG3YLT4_1.recalibrated.bam.bai,neg_somatic_036,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0003_gDNA_0002_A237CFYLT3_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0024/20260212_LH00166_0244_A237CFYLT3__aa3fd045--20260224-223853/alignments/recalibrated/NA12878_c_0003_gDNA_0002_A237CFYLT3_1/NA12878_c_0003_gDNA_0002_A237CFYLT3_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/cgp_dna_exp0024/20260212_LH00166_0244_A237CFYLT3__aa3fd045--20260224-223853/alignments/recalibrated/NA12878_c_0003_gDNA_0002_A237CFYLT3_1/NA12878_c_0003_gDNA_0002_A237CFYLT3_1.recalibrated.bam.bai,neg_somatic_037,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0003_gDNA_0002_A237FLHLT3_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260202_LH00166_0235_A237FLHLT3__aa3fd045--20260226-233316/alignments/recalibrated/NA12878_c_0003_gDNA_0002_A237FLHLT3_1/NA12878_c_0003_gDNA_0002_A237FLHLT3_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260202_LH00166_0235_A237FLHLT3__aa3fd045--20260226-233316/alignments/recalibrated/NA12878_c_0003_gDNA_0002_A237FLHLT3_1/NA12878_c_0003_gDNA_0002_A237FLHLT3_1.recalibrated.bam.bai,neg_somatic_038,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0003_gDNA_0002_A237FLHLT3_2,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260202_LH00166_0235_A237FLHLT3__aa3fd045--20260226-233316/alignments/recalibrated/NA12878_c_0003_gDNA_0002_A237FLHLT3_2/NA12878_c_0003_gDNA_0002_A237FLHLT3_2.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260202_LH00166_0235_A237FLHLT3__aa3fd045--20260226-233316/alignments/recalibrated/NA12878_c_0003_gDNA_0002_A237FLHLT3_2/NA12878_c_0003_gDNA_0002_A237FLHLT3_2.recalibrated.bam.bai,neg_somatic_039,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0003_gDNA_0002_A23H3NYLT3_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260302_LH00166_0256_A23H3NYLT3__444aee1e--20260303-100014/alignments/recalibrated/NA12878_c_0003_gDNA_0002_A23H3NYLT3_1/NA12878_c_0003_gDNA_0002_A23H3NYLT3_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260302_LH00166_0256_A23H3NYLT3__444aee1e--20260303-100014/alignments/recalibrated/NA12878_c_0003_gDNA_0002_A23H3NYLT3_1/NA12878_c_0003_gDNA_0002_A23H3NYLT3_1.recalibrated.bam.bai,neg_somatic_040,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0003_gDNA_0002_A23H3W5LT3_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260318_LH00166_0269_A23H3W5LT3__d7a6b981--20260320-054016/alignments/recalibrated/NA12878_c_0003_gDNA_0002_A23H3W5LT3_1/NA12878_c_0003_gDNA_0002_A23H3W5LT3_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260318_LH00166_0269_A23H3W5LT3__d7a6b981--20260320-054016/alignments/recalibrated/NA12878_c_0003_gDNA_0002_A23H3W5LT3_1/NA12878_c_0003_gDNA_0002_A23H3W5LT3_1.recalibrated.bam.bai,neg_somatic_041,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0003_gDNA_0002_A23H3W5LT3_2,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260318_LH00166_0269_A23H3W5LT3__d7a6b981--20260320-054016/alignments/recalibrated/NA12878_c_0003_gDNA_0002_A23H3W5LT3_2/NA12878_c_0003_gDNA_0002_A23H3W5LT3_2.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260318_LH00166_0269_A23H3W5LT3__d7a6b981--20260320-054016/alignments/recalibrated/NA12878_c_0003_gDNA_0002_A23H3W5LT3_2/NA12878_c_0003_gDNA_0002_A23H3W5LT3_2.recalibrated.bam.bai,neg_somatic_042,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0003_gDNA_0002_B2377KTLT3_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260209_LH00166_0241_B2377KTLT3__8aacaa71--20260305-220745/alignments/recalibrated/NA12878_c_0003_gDNA_0002_B2377KTLT3_1/NA12878_c_0003_gDNA_0002_B2377KTLT3_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260209_LH00166_0241_B2377KTLT3__8aacaa71--20260305-220745/alignments/recalibrated/NA12878_c_0003_gDNA_0002_B2377KTLT3_1/NA12878_c_0003_gDNA_0002_B2377KTLT3_1.recalibrated.bam.bai,neg_somatic_043,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0003_gDNA_0002_B23H2GYLT3_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260316_LH00166_0268_B23H2GYLT3__d7a6b981--20260318-065009/alignments/recalibrated/NA12878_c_0003_gDNA_0002_B23H2GYLT3_1/NA12878_c_0003_gDNA_0002_B23H2GYLT3_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260316_LH00166_0268_B23H2GYLT3__d7a6b981--20260318-065009/alignments/recalibrated/NA12878_c_0003_gDNA_0002_B23H2GYLT3_1/NA12878_c_0003_gDNA_0002_B23H2GYLT3_1.recalibrated.bam.bai,neg_somatic_044,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0003_gDNA_0002_B23H3TCLT3_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260223_LH00166_0251_B23H3TCLT3__aa3fd045--20260225-013009/alignments/recalibrated/NA12878_c_0003_gDNA_0002_B23H3TCLT3_1/NA12878_c_0003_gDNA_0002_B23H3TCLT3_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260223_LH00166_0251_B23H3TCLT3__aa3fd045--20260225-013009/alignments/recalibrated/NA12878_c_0003_gDNA_0002_B23H3TCLT3_1/NA12878_c_0003_gDNA_0002_B23H3TCLT3_1.recalibrated.bam.bai,neg_somatic_045,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0003_gDNA_0002_B23H3TCLT3_2,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260223_LH00166_0251_B23H3TCLT3__aa3fd045--20260225-013009/alignments/recalibrated/NA12878_c_0003_gDNA_0002_B23H3TCLT3_2/NA12878_c_0003_gDNA_0002_B23H3TCLT3_2.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260223_LH00166_0251_B23H3TCLT3__aa3fd045--20260225-013009/alignments/recalibrated/NA12878_c_0003_gDNA_0002_B23H3TCLT3_2/NA12878_c_0003_gDNA_0002_B23H3TCLT3_2.recalibrated.bam.bai,neg_somatic_046,
NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0003_gDNA_0002_B23H3Y2LT3_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260309_LH00166_0264_B23H3Y2LT3__5d7f62c6--20260311-041011/alignments/recalibrated/NA12878_c_0003_gDNA_0002_B23H3Y2LT3_1/NA12878_c_0003_gDNA_0002_B23H3Y2LT3_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260309_LH00166_0264_B23H3Y2LT3__5d7f62c6--20260311-041011/alignments/recalibrated/NA12878_c_0003_gDNA_0002_B23H3Y2LT3_1/NA12878_c_0003_gDNA_0002_B23H3Y2LT3_1.recalibrated.bam.bai,neg_somatic_047,
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NA12878_c_0002_gDNA_0005_B23KYWJLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260225_LH00527_0055_B23KYWJLT4__5d8e7d70--20260227-170008/alignments/recalibrated/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1/NA12878_c_0002_gDNA_0005_B23KYWJLT4_1.recalibrated.bam.bai,NA12878_c_0002_gDNA_0008_A23TNVNLT4_1,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260508_LH00519_0089_A23TNVNLT4__8afaba2b--20260511-081020/alignments/recalibrated/NA12878_c_0002_gDNA_0008_A23TNVNLT4_1/NA12878_c_0002_gDNA_0008_A23TNVNLT4_1.recalibrated.bam,s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/daq/20260508_LH00519_0089_A23TNVNLT4__8afaba2b--20260511-081020/alignments/recalibrated/NA12878_c_0002_gDNA_0008_A23TNVNLT4_1/NA12878_c_0002_gDNA_0008_A23TNVNLT4_1.recalibrated.bam.bai,neg_somatic_066,
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