pos_somatic_053.snv_indel.tmb.vars.txt

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Filename: pos_somatic_053.snv_indel.tmb.vars.txt
Full Path: s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/sarek_dna_qc/snv_indel_rerun_20260604/positive_somatic/dna-qc-pos-snv-indel-20260604-0604-1916__624ba641--20260604-191650/variant_calling/snv_indel/pos_somatic_053/pos_somatic_053.snv_indel.tmb.vars.txt
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Workflow Run: dna-qc-pos-snv-indel-20260604-0604-1916
Published: Jun 04, 2026 2:44 PM
Content

CHROM,POS,REF,ALT,IMPACT,CONSEQUENCE,IS_NON_SYNONYMOUS,TUMOR_GT,NORMAL_GT,TUMOR_VAF
chr1,930314,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.052700
chr1,1014372,T,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.053000
chr1,1041532,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.054800
chr1,1041577,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.055400
chr1,1044340,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.096900
chr1,1048197,A,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.071400
chr1,1051746,C,CG,HIGH,frameshift_variant,TRUE,0|1,0/0,0.059800
chr1,1051811,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.102000
chr1,1179319,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.093700
chr1,1183966,C,T,MODERATE,missense_variant,TRUE,1|0,0/0,0.108000
chr1,1197627,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.105000
chr1,1206444,G,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.085200
chr1,1217721,C,A,MODERATE,missense_variant,TRUE,1|0,0/0,0.087300
chr1,1232859,C,CG,HIGH,frameshift_variant,TRUE,0|1,0/0,0.134100
chr1,1242601,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.079300
chr1,1284070,CG,C,HIGH,frameshift_variant,TRUE,0|1,0/0,0.130400
chr1,1285621,A,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.101000
chr1,1286887,G,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.199000
chr1,1288005,G,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.189000
chr1,1290519,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.058400
chr1,1296624,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.060600
chr1,1313091,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.089000
chr1,1331434,G,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.050600
chr1,1333889,T,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.111000
chr1,1336281,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.080400
chr1,1338108,G,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.054100
chr1,1339410,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.118000
chr1,1354729,CG,C,HIGH,frameshift_variant,TRUE,0|1,0/0,0.213500
chr1,1419134,TC,T,HIGH,frameshift_variant,TRUE,0|1,0/0,0.100400
chr1,1427743,C,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.070100
chr1,1437393,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.094700
chr1,1455470,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.082400
chr1,1455828,T,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.093000
chr1,1477279,G,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.086100
chr1,1486574,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.085600
chr1,1495489,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.078500
chr1,1520210,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.060800
chr1,1637773,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.126000
chr1,1754642,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.083400
chr1,1757128,GC,G,HIGH,frameshift_variant,TRUE,0|1,0/0,0.101300
chr1,1922591,C,CA,HIGH,frameshift_variant,TRUE,0/1,0/0,0.124900
chr1,1965046,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.053500
chr1,1966450,G,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.116000
chr1,1966499,G,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.054300
chr1,1970786,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.085800
chr1,2029663,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.062400
chr1,2185409,CT,C,HIGH,frameshift_variant,TRUE,0|1,0/0,0.166100
chr1,2324130,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.111000
chr1,2372561,G,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.072600
chr1,2406576,T,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.060500
chr1,2499108,C,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.076500
chr1,2502535,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.123000
chr1,2504821,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.064800
chr1,2504965,G,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.103000
chr1,2508891,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.062400
chr1,2558366,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.106000
chr1,2559867,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.101000
chr1,2629400,GC,G,HIGH,frameshift_variant,TRUE,0|1,0/0,0.180700
chr1,2789591,T,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.150000
chr1,3425595,A,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.094300
chr1,3490548,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.087600
chr1,3495901,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.118000
chr1,3501835,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.081300
chr1,3515461,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.103000
chr1,3631486,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.101000
chr1,3638819,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.054900
chr1,3752700,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.051300
chr1,3763364,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.052100
chr1,3890694,G,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.072600
chr1,3890886,C,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.066300
chr1,4712295,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.103000
chr1,5952729,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.107000
chr1,5986204,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.083600
chr1,6096647,G,A,HIGH,stop_gained,TRUE,0|1,0/0,0.056300
chr1,6112158,C,T,MODERATE,missense_variant,TRUE,1|0,0/0,0.094600
chr1,6121131,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.071300
chr1,6130248,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.050600
chr1,6130323,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.055500
chr1,6207392,C,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.112000
chr1,6249964,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.109000
chr1,6251437,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.062600
chr1,6465532,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.099900
chr1,6471045,A,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.062000
chr1,6550479,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.051400
chr1,6580630,GCA,G,HIGH,frameshift_variant,TRUE,0/1,0/0,0.103800
chr1,6593622,TC,T,HIGH,frameshift_variant,TRUE,0/1,0/0,0.084900
chr1,6620067,A,AG,HIGH,frameshift_variant,TRUE,0/1,0/0,0.119500
chr1,6634039,A,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.111000
chr1,7664870,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.064300
chr1,7777247,C,T,HIGH,stop_gained,TRUE,0/1,0/0,0.113000
chr1,7827202,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.087200
chr1,7933266,A,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.114000
chr1,8359868,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.057600
chr1,8360415,TG,T,HIGH,frameshift_variant,TRUE,0|1,0/0,0.103000
chr1,9038502,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.130000
chr1,9039554,C,A,MODERATE,missense_variant&splice_region_variant,TRUE,0|1,0/0,0.085900
chr1,9039574,T,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.060300
chr1,9128729,A,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.058200
chr1,9128817,T,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.091200
chr1,9601378,C,T,HIGH,stop_gained,TRUE,0|1,0/0,0.106000
chr1,9773304,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.074700
chr1,9823670,A,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.094200
chr1,10130715,G,A,MODERATE,missense_variant&splice_region_variant,TRUE,0/1,0/0,0.112000
chr1,10629881,TG,T,HIGH,frameshift_variant,TRUE,0|1,0/0,0.110700
chr1,10654446,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.111000
chr1,11027630,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.110000
chr1,11124529,T,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.054700
chr1,11194540,T,TG,HIGH,frameshift_variant,TRUE,0|1,0/0,0.059500
chr1,11285994,T,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.060800
chr1,11515382,C,CT,HIGH,frameshift_variant,TRUE,0/1,0/0,0.120600
chr1,11523978,A,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.063800
chr1,11529818,C,CT,HIGH,frameshift_variant,TRUE,0|1,0/0,0.053900
chr1,11535609,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.092500
chr1,11661264,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.106000
chr1,11765872,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.051500
chr1,11766569,AC,A,HIGH,frameshift_variant,TRUE,0|1,0/0,0.053800
chr1,11775542,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.095700
chr1,11775556,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.104000
chr1,11784367,G,A,MODERATE,missense_variant,TRUE,1|0,0/0,0.118000
chr1,11784463,C,T,HIGH,stop_gained,TRUE,1|0,0/0,0.061500
chr1,11787392,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.103000
chr1,11790870,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.089100
chr1,11838551,T,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.085900
chr1,12001464,C,T,HIGH,stop_gained,TRUE,0|1,0/0,0.092900
chr1,12021838,G,A,MODERATE,missense_variant&splice_region_variant,TRUE,0/1,0/0,0.052200
chr1,12031782,C,T,MODERATE,missense_variant,TRUE,1|0,0/0,0.125000
chr1,12138248,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.057100
chr1,12206926,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.054600
chr1,12256336,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.098900
chr1,12268756,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.093900
chr1,12354018,C,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.089700
chr1,12383094,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.108000
chr1,12755722,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.183000
chr1,12775932,T,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.103000
chr1,12825004,T,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.086700
chr1,12859290,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.172000
chr1,12859926,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.058400
chr1,12882118,A,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.194000
chr1,12894742,AGTTC,A,HIGH,frameshift_variant,TRUE,0/1,0/0,0.090700
chr1,13178963,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.229000
chr1,13321711,A,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.079600
chr1,13322083,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.132000
chr1,13344585,C,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.122000
chr1,13780421,A,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.095800
chr1,13780617,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.091000
chr1,15114594,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.136000
chr1,15272525,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.147000
chr1,15328320,T,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.067600
chr1,15381357,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.109000
chr1,15518223,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.079500
chr1,15578868,G,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.074900
chr1,15661697,C,CA,HIGH,frameshift_variant,TRUE,0/1,0/0,0.099100
chr1,15719866,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.052700
chr1,15730589,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.118000
chr1,15742576,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.063700
chr1,15768609,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.093800
chr1,15934977,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.081100
chr1,16019205,A,C,MODERATE,missense_variant,TRUE,1|0,0/0,0.108000
chr1,16031793,AG,A,HIGH,frameshift_variant,TRUE,0|1,0/0,0.089200
chr1,16059496,T,C,MODERATE,missense_variant&splice_region_variant,TRUE,0|1,0/0,0.104000
chr1,16137994,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.079800
chr1,16138310,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.085500
chr1,16209002,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.109000
chr1,16250899,T,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.052300
chr1,16305888,C,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.070700
chr1,16405093,A,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.057000
chr1,16409602,G,A,MODERATE,missense_variant&splice_region_variant,TRUE,0|1,0/0,0.115000
chr1,16410031,T,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.116000
chr1,16458968,T,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.093500
chr1,16944158,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.070200
chr1,16965851,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.051000
chr1,16966429,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.101000
chr1,17086657,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.061400
chr1,17105001,C,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.062300
chr1,17244076,C,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.083200
chr1,17244196,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.084400
chr1,17271096,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.109000
chr1,17276579,GC,G,HIGH,frameshift_variant,TRUE,0|1,0/0,0.054900
chr1,17331112,C,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.053400
chr1,17438292,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.189000
chr1,17621915,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.054900
chr1,17656032,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.074400
chr1,18227955,C,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.054800
chr1,18365416,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.109000
chr1,18631652,G,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.053700
chr1,18839606,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.112000
chr1,18872954,G,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.082600
chr1,18875425,T,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.087300
chr1,19153378,C,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.050800
chr1,19239888,A,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.095300
chr1,19282801,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.104000
chr1,19342790,C,CGCTG,HIGH,frameshift_variant,TRUE,0/1,0/0,0.050100
chr1,19665805,G,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.103000
chr1,19747256,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.087600
chr1,19780638,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.105000
chr1,20327970,C,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.083800
chr1,20342560,G,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.093000
chr1,20345465,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.158000
chr1,20685017,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.090700
chr1,20721979,A,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.110000
chr1,21290391,CG,C,HIGH,frameshift_variant,TRUE,0|1,0/0,0.106100
chr1,21468810,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.098700
chr1,21608290,A,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.071400
chr1,21833322,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.050800
chr1,21833527,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.097200
chr1,21834811,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.059800
chr1,21855832,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.113000
chr1,21887254,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.056800
chr1,21895964,C,T,MODERATE,missense_variant&splice_region_variant,TRUE,0/1,0/0,0.051100
chr1,22001714,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.108000
chr1,22006996,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.053500
chr1,22086820,G,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.091600
chr1,22586558,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.113000
chr1,22639321,GA,G,HIGH,frameshift_variant,TRUE,0/1,0/0,0.121000
chr1,22913501,GA,G,HIGH,frameshift_variant,TRUE,0|1,0/0,0.059600
chr1,22953767,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.052300
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chrX,129921438,A,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.120000
chrX,129926301,A,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.050300
chrX,130012986,C,CG,HIGH,frameshift_variant,TRUE,0/1,0/0,0.126900
chrX,130016118,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.110000
chrX,130051916,C,T,HIGH,stop_gained,TRUE,0/1,0/0,0.055100
chrX,130236294,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.055700
chrX,130670037,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.123000
chrX,131275097,C,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.101000
chrX,131275101,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.105000
chrX,131275205,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.060800
chrX,131276945,C,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.059400
chrX,132072288,A,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.098000
chrX,132628996,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.067500
chrX,132957139,G,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.094700
chrX,133026798,G,A,MODERATE,missense_variant,TRUE,1|0,0/0,0.116000
chrX,133027727,A,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.143000
chrX,133027851,G,GTGT,MODERATE,inframe_insertion,TRUE,0|1,0/0,0.122100
chrX,134245257,G,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.062300
chrX,135032442,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.056800
chrX,135294022,AT,A,HIGH,frameshift_variant,TRUE,0|1,0/0,0.075400
chrX,135883220,A,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.111000
chrX,135911655,T,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.143000
chrX,135998486,A,AT,HIGH,frameshift_variant,TRUE,0/1,0/0,0.077800
chrX,136208516,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.054200
chrX,136322808,AT,A,HIGH,frameshift_variant,TRUE,0/1,0/0,0.063200
chrX,136347253,T,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.121000
chrX,136347255,T,A,HIGH,stop_gained,TRUE,0|1,0/0,0.121000
chrX,136349555,G,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.085600
chrX,136361499,GG,TT,MODERATE,missense_variant,TRUE,0/1,0/0,0.051900
chrX,136490272,C,T,HIGH,stop_gained,TRUE,0|1,0/0,0.059700
chrX,138857660,AG,A,HIGH,frameshift_variant,TRUE,0/1,0/0,0.221400
chrX,139626677,C,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.050400
chrX,139787209,T,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.167000
chrX,140092538,A,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.119000
chrX,141176687,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.107000
chrX,141865499,A,G,MODERATE,missense_variant,TRUE,0/1,0/0,0.096900
chrX,141897002,C,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.097400
chrX,141907086,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.091800
chrX,143630136,T,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.054800
chrX,145824488,TC,T,HIGH,frameshift_variant,TRUE,0|1,0/0,0.126800
chrX,147981424,G,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.092400
chrX,148662658,T,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.058300
chrX,148980774,T,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.100000
chrX,148980790,A,G,MODERATE,missense_variant&splice_region_variant,TRUE,0|1,0/0,0.102000
chrX,149545872,G,C,MODERATE,missense_variant,TRUE,0/1,0/0,0.057700
chrX,149885189,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.104000
chrX,149929876,CT,C,HIGH,frameshift_variant,TRUE,0/1,0/0,0.083500
chrX,150470546,AC,A,HIGH,frameshift_variant,TRUE,0|1,0/0,0.107400
chrX,150471087,T,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.092600
chrX,150471341,G,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.117000
chrX,150471488,C,T,HIGH,stop_gained&splice_region_variant,TRUE,0|1,0/0,0.059400
chrX,150659681,TA,T,HIGH,frameshift_variant,TRUE,0/1,0/0,0.090600
chrX,150693625,CG,C,HIGH,frameshift_variant,TRUE,0|1,0/0,0.092900
chrX,150762653,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.098100
chrX,151672370,A,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.133000
chrX,151739696,G,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.091200
chrX,151954912,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.094300
chrX,151955391,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.106000
chrX,151970359,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.084200
chrX,152134744,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.096900
chrX,152652877,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.078900
chrX,153182604,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.141000
chrX,153319732,G,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.055500
chrX,153397784,C,A,HIGH,stop_gained,TRUE,0|1,0/0,0.099200
chrX,153420913,C,CT,HIGH,frameshift_variant,TRUE,0|1,0/0,0.091700
chrX,153421124,C,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.094800
chrX,153421230,A,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.092000
chrX,153456353,G,C,MODERATE,missense_variant,TRUE,1|0,0/0,0.097800
chrX,153580152,GC,G,HIGH,frameshift_variant,TRUE,0|1,0/0,0.115900
chrX,153671927,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.102000
chrX,153673952,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.065900
chrX,153725360,GTC,G,HIGH,frameshift_variant,TRUE,0|1,0/0,0.052900
chrX,153725918,C,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.061300
chrX,153770197,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.111000
chrX,153775269,T,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.078900
chrX,153778412,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.099000
chrX,153781744,C,T,MODERATE,missense_variant&splice_region_variant,TRUE,0|1,0/0,0.096900
chrX,153803566,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.117000
chrX,153803868,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.095200
chrX,153906605,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.219000
chrX,153921489,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.105000
chrX,153954831,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.151000
chrX,154018721,A,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.103000
chrX,154019752,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.103000
chrX,154315258,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.098600
chrX,154320904,G,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.055500
chrX,154366066,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.105000
chrX,154450064,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.083700
chrX,154461424,C,T,MODERATE,missense_variant,TRUE,0|1,0/0,0.104000
chrX,154461618,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.050600
chrX,154470577,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.107000
chrX,154508561,T,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.088200
chrX,154508592,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.054200
chrX,154652276,G,A,MODERATE,missense_variant,TRUE,0|1,0/0,0.118000
chrX,154652360,C,G,MODERATE,missense_variant,TRUE,0|1,0/0,0.090600
chrX,154695922,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.088300
chrX,154930822,T,C,MODERATE,missense_variant,TRUE,0|1,0/0,0.053900
chrX,155077219,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.082400
chrX,155298858,C,T,MODERATE,missense_variant,TRUE,0/1,0/0,0.053400
chrX,155774352,G,A,MODERATE,missense_variant,TRUE,0/1,0/0,0.063300