File Info
- Filename
- pos_somatic_000.tnseq.orientation_data.tsv
- Full Path
- s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/sarek_dna_qc/snv_indel_rerun_20260604/positive_somatic/dna-qc-pos-snv-indel-20260604-0604-1916__624ba641--20260604-191650/variant_calling/tnseq/pos_somatic_000/pos_somatic_000.tnseq.orientation_data.tsv
- Size
- 9.0 KB
- Workflow Run
- dna-qc-pos-snv-indel-20260604-0604-1916
- Published
- Jun 04, 2026 12:35 PM
Content
View in new tab| #<METADATA>SAMPLE=FFPE_HD789_01_gDNA_0001_A23KYMYLT4_1 | |||||||||||||||
| context | rev_comp | f1r2_a | f1r2_c | f1r2_g | f1r2_t | f2r1_a | f2r1_c | f2r1_g | f2r1_t | hom_ref | germline_het | somatic_het | hom_var | num_examples | num_alt_examples |
| AAA | TTT | 0 | 5.69173e-08 | 3.58069e-07 | 5.14508e-08 | 0 | 7.06832e-07 | 1.20242e-07 | 3.37447e-08 | 0.998013 | 1.74132e-05 | 0.00191397 | 5.41054e-05 | 3070230 | 9004 |
| AAC | GTT | 0 | 7.25544e-08 | 1.61783e-06 | 6.85377e-08 | 0 | 7.26265e-08 | 1.25297e-07 | 7.98754e-08 | 0.997594 | 4.26286e-05 | 0.00219936 | 0.00016213 | 1500124 | 4783 |
| AAG | CTT | 0 | 4.46067e-08 | 1.3405e-07 | 4.34049e-08 | 0 | 4.47515e-08 | 2.24114e-07 | 4.45164e-08 | 0.997571 | 2.68149e-05 | 0.00227537 | 0.000126697 | 2366298 | 8142 |
| AAT | ATT | 0 | 5.53919e-08 | 2.38184e-07 | 5.55211e-08 | 0 | 5.48713e-08 | 9.81004e-08 | 5.59368e-08 | 0.997786 | 3.69833e-05 | 0.0020459 | 0.000130154 | 1909749 | 5520 |
| ACA | TGT | 5.49587e-08 | 0 | 5.19353e-08 | 1.29628e-07 | 5.71304e-08 | 0 | 5.09725e-08 | 8.09303e-08 | 0.997548 | 4.05182e-05 | 0.00224595 | 0.000164909 | 2130319 | 6302 |
| ACC | GGT | 7.61953e-08 | 0 | 6.56186e-08 | 5.41234e-07 | 7.29326e-08 | 0 | 6.64708e-08 | 9.71683e-08 | 0.998054 | 2.71817e-05 | 0.00181509 | 0.000102334 | 1736135 | 4236 |
| ACG | CGT | 1.76053e-07 | 0 | 1.75188e-07 | 3.69082e-07 | 1.05914e-06 | 0 | 1.84977e-07 | 2.91165e-06 | 0.988741 | 0.000575027 | 0.00987948 | 0.000799194 | 593166 | 5691 |
| ACT | AGT | 6.64486e-08 | 0 | 5.56962e-07 | 1.10742e-07 | 6.92012e-08 | 0 | 6.35108e-08 | 3.54074e-07 | 0.997949 | 4.89074e-05 | 0.00180727 | 0.000193866 | 1703991 | 4031 |
| AGA | TCT | 6.33164e-08 | 4.54011e-08 | 0 | 5.94834e-08 | 6.08769e-08 | 4.61849e-08 | 0 | 4.45312e-08 | 0.998392 | 2.2827e-05 | 0.00151799 | 6.70778e-05 | 2503380 | 5262 |
| AGC | GCT | 2.45833e-07 | 5.00351e-08 | 0 | 5.84287e-08 | 2.76975e-07 | 7.17708e-08 | 0 | 5.8812e-08 | 0.99811 | 1.87653e-05 | 0.0017974 | 7.32787e-05 | 2188839 | 5753 |
| AGG | CCT | 1.19198e-06 | 4.42221e-08 | 0 | 6.41744e-07 | 6.98694e-08 | 3.97945e-08 | 0 | 4.77799e-08 | 0.998186 | 2.13898e-05 | 0.00170594 | 8.44781e-05 | 2707547 | 6480 |
| AGT | ACT | 3.54074e-07 | 6.35108e-08 | 0 | 6.92012e-08 | 1.10742e-07 | 5.56962e-07 | 0 | 6.64486e-08 | 0.997949 | 4.89074e-05 | 0.00180727 | 0.000193866 | 1703991 | 4031 |
| ATA | TAT | 7.3435e-08 | 1.32947e-07 | 7.59051e-08 | 0 | 7.36162e-08 | 1.24627e-07 | 1.07453e-07 | 0 | 0.996774 | 6.56701e-05 | 0.0029209 | 0.000238938 | 1425083 | 5413 |
| ATC | GAT | 7.34497e-08 | 4.45076e-07 | 7.09796e-08 | 0 | 7.07617e-08 | 1.83706e-07 | 8.56168e-08 | 0 | 0.997737 | 3.21302e-05 | 0.00207121 | 0.000159182 | 1468412 | 4816 |
| ATG | CAT | 5.38292e-08 | 9.08949e-08 | 5.66447e-08 | 0 | 5.45872e-08 | 2.53994e-07 | 5.57532e-08 | 0 | 0.996564 | 0.000113207 | 0.00297058 | 0.000351188 | 1948295 | 7642 |
| ATT | AAT | 5.59368e-08 | 9.81004e-08 | 5.48713e-08 | 0 | 5.55211e-08 | 2.38184e-07 | 5.53919e-08 | 0 | 0.997786 | 3.69833e-05 | 0.0020459 | 0.000130154 | 1909749 | 5520 |
| CAA | TTG | 0 | 6.04681e-08 | 1.1786e-07 | 5.39959e-08 | 0 | 5.73e-08 | 1.20174e-07 | 5.37207e-08 | 0.997583 | 3.02443e-05 | 0.00219294 | 0.000193735 | 1917864 | 6433 |
| CAC | GTG | 0 | 5.67793e-08 | 9.59928e-08 | 5.30601e-08 | 0 | 3.39022e-07 | 1.96732e-07 | 5.19988e-08 | 0.997166 | 6.01122e-05 | 0.00248078 | 0.000291814 | 2075048 | 7684 |
| CAG | CTG | 0 | 3.35172e-08 | 7.66275e-08 | 3.28303e-08 | 0 | 3.33047e-08 | 2.56591e-07 | 3.2834e-08 | 0.997038 | 5.23477e-05 | 0.00267627 | 0.000232626 | 3207856 | 12439 |
| CAT | ATG | 0 | 5.57532e-08 | 2.53994e-07 | 5.45872e-08 | 0 | 5.66447e-08 | 9.08949e-08 | 5.38292e-08 | 0.996564 | 0.000113207 | 0.00297058 | 0.000351188 | 1948295 | 7642 |
| CCA | TGG | 4.4122e-08 | 0 | 3.94375e-08 | 1.04868e-06 | 1.17436e-07 | 0 | 4.70823e-08 | 1.01094e-07 | 0.998323 | 1.41809e-05 | 0.00161044 | 5.07136e-05 | 2702988 | 6586 |
| CCC | GGG | 4.54745e-08 | 0 | 4.18264e-08 | 2.10678e-07 | 3.94648e-07 | 0 | 3.65327e-07 | 2.12941e-06 | 0.997975 | 2.27975e-05 | 0.00193006 | 6.93547e-05 | 2666875 | 7111 |
| CCG | CGG | 1.02081e-07 | 0 | 1.02888e-07 | 1.87374e-06 | 1.03976e-06 | 0 | 1.02553e-07 | 3.02184e-06 | 0.991721 | 0.000274139 | 0.00751831 | 0.000480693 | 1061829 | 8235 |
| CCT | AGG | 4.77799e-08 | 0 | 3.97945e-08 | 6.98694e-08 | 6.41744e-07 | 0 | 4.42221e-08 | 1.19198e-06 | 0.998186 | 2.13898e-05 | 0.00170594 | 8.44781e-05 | 2707547 | 6480 |
| CGA | TCG | 3.20689e-07 | 1.93207e-07 | 0 | 1.93731e-07 | 3.75087e-06 | 1.94197e-07 | 0 | 1.83536e-07 | 0.993339 | 0.000219569 | 0.00599321 | 0.000443282 | 575458 | 3603 |
| CGC | GCG | 2.21183e-06 | 1.20234e-07 | 0 | 2.31562e-07 | 2.63996e-07 | 3.04917e-07 | 0 | 1.19585e-07 | 0.992001 | 0.000198167 | 0.0074541 | 0.000343002 | 912233 | 7087 |
| CGG | CCG | 3.02184e-06 | 1.02553e-07 | 0 | 1.03976e-06 | 1.87374e-06 | 1.02888e-07 | 0 | 1.02081e-07 | 0.991721 | 0.000274139 | 0.00751831 | 0.000480693 | 1061829 | 8235 |
| CGT | ACG | 2.91165e-06 | 1.84977e-07 | 0 | 1.05914e-06 | 3.69082e-07 | 1.75188e-07 | 0 | 1.76053e-07 | 0.988741 | 0.000575027 | 0.00987948 | 0.000799194 | 593166 | 5691 |
| CTA | TAG | 9.47551e-08 | 1.79974e-07 | 9.60353e-08 | 0 | 9.41045e-08 | 2.19785e-07 | 9.48036e-08 | 0 | 0.997393 | 4.30994e-05 | 0.00235713 | 0.000205656 | 1098607 | 3995 |
| CTC | GAG | 4.58909e-08 | 1.98186e-07 | 4.64646e-08 | 0 | 4.33265e-08 | 2.46142e-07 | 4.29423e-08 | 0 | 0.997332 | 2.29948e-05 | 0.00252919 | 0.000114755 | 2432986 | 9640 |
| CTG | CAG | 3.2834e-08 | 2.56591e-07 | 3.33047e-08 | 0 | 3.28303e-08 | 7.66275e-08 | 3.35172e-08 | 0 | 0.997038 | 5.23477e-05 | 0.00267627 | 0.000232626 | 3207856 | 12439 |
| CTT | AAG | 4.45164e-08 | 2.24114e-07 | 4.47515e-08 | 0 | 4.34049e-08 | 1.3405e-07 | 4.46067e-08 | 0 | 0.997571 | 2.68149e-05 | 0.00227537 | 0.000126697 | 2366298 | 8142 |
| GAA | TTC | 0 | 4.73418e-08 | 8.58886e-07 | 4.5292e-08 | 0 | 4.64379e-08 | 1.65514e-07 | 4.6776e-08 | 0.997829 | 1.44483e-05 | 0.00204339 | 0.000111802 | 2287638 | 7431 |
| GAC | GTC | 0 | 7.44215e-08 | 2.00512e-07 | 7.43896e-08 | 0 | 7.27433e-08 | 4.39049e-07 | 7.5854e-08 | 0.997633 | 3.83515e-05 | 0.00212498 | 0.000202794 | 1442479 | 4858 |
| GAG | CTC | 0 | 4.29423e-08 | 2.46142e-07 | 4.33265e-08 | 0 | 4.64646e-08 | 1.98186e-07 | 4.58909e-08 | 0.997332 | 2.29948e-05 | 0.00252919 | 0.000114755 | 2432986 | 9640 |
| GAT | ATC | 0 | 8.56168e-08 | 1.83706e-07 | 7.07617e-08 | 0 | 7.09796e-08 | 4.45076e-07 | 7.34497e-08 | 0.997737 | 3.21302e-05 | 0.00207121 | 0.000159182 | 1468412 | 4816 |
| GCA | TGC | 3.01061e-07 | 0 | 5.2786e-08 | 1.24118e-06 | 5.87141e-08 | 0 | 5.67507e-08 | 1.1382e-07 | 0.997888 | 1.80144e-05 | 0.002015 | 7.67675e-05 | 2121916 | 6169 |
| GCC | GGC | 5.28914e-08 | 0 | 9.09994e-08 | 8.93479e-08 | 6.29774e-07 | 0 | 4.76275e-08 | 7.76427e-08 | 0.998012 | 1.86149e-05 | 0.00189821 | 6.99848e-05 | 2376506 | 6583 |
| GCG | CGC | 1.19585e-07 | 0 | 3.04917e-07 | 2.63996e-07 | 2.31562e-07 | 0 | 1.20234e-07 | 2.21183e-06 | 0.992001 | 0.000198167 | 0.0074541 | 0.000343002 | 912233 | 7087 |
| GCT | AGC | 5.8812e-08 | 0 | 7.17708e-08 | 2.76975e-07 | 5.84287e-08 | 0 | 5.00351e-08 | 2.45833e-07 | 0.99811 | 1.87653e-05 | 0.0017974 | 7.32787e-05 | 2188839 | 5753 |
| GGA | TCC | 7.83887e-08 | 5.91622e-08 | 0 | 5.10453e-08 | 7.72688e-08 | 5.55006e-08 | 0 | 4.79411e-08 | 0.998495 | 1.92821e-05 | 0.00144767 | 3.78211e-05 | 2359283 | 4889 |
| GGC | GCC | 7.76427e-08 | 4.76275e-08 | 0 | 6.29774e-07 | 8.93479e-08 | 9.09994e-08 | 0 | 5.28914e-08 | 0.998012 | 1.86149e-05 | 0.00189821 | 6.99848e-05 | 2376506 | 6583 |
| GGG | CCC | 2.12941e-06 | 3.65327e-07 | 0 | 3.94648e-07 | 2.10678e-07 | 4.18264e-08 | 0 | 4.54745e-08 | 0.997975 | 2.27975e-05 | 0.00193006 | 6.93547e-05 | 2666875 | 7111 |
| GGT | ACC | 9.71683e-08 | 6.64708e-08 | 0 | 7.29326e-08 | 5.41234e-07 | 6.56186e-08 | 0 | 7.61953e-08 | 0.998054 | 2.71817e-05 | 0.00181509 | 0.000102334 | 1736135 | 4236 |
| GTA | TAC | 9.5661e-08 | 1.64434e-07 | 9.56246e-08 | 0 | 9.21798e-08 | 1.95127e-07 | 9.34635e-08 | 0 | 0.997535 | 4.28721e-05 | 0.00224792 | 0.000173724 | 1146904 | 3869 |
| GTC | GAC | 7.5854e-08 | 4.39049e-07 | 7.27433e-08 | 0 | 7.43896e-08 | 2.00512e-07 | 7.44215e-08 | 0 | 0.997633 | 3.83515e-05 | 0.00212498 | 0.000202794 | 1442479 | 4858 |
| GTG | CAC | 5.19988e-08 | 1.96732e-07 | 3.39022e-07 | 0 | 5.30601e-08 | 9.59928e-08 | 5.67793e-08 | 0 | 0.997166 | 6.01122e-05 | 0.00248078 | 0.000291814 | 2075048 | 7684 |
| GTT | AAC | 7.98754e-08 | 1.25297e-07 | 7.26265e-08 | 0 | 6.85377e-08 | 1.61783e-06 | 7.25544e-08 | 0 | 0.997594 | 4.26286e-05 | 0.00219936 | 0.00016213 | 1500124 | 4783 |
| TAA | TTA | 0 | 6.81448e-08 | 5.72003e-07 | 9.6021e-08 | 0 | 6.81514e-08 | 1.25006e-07 | 7.75846e-08 | 0.997609 | 3.02605e-05 | 0.00223388 | 0.00012628 | 1569596 | 5228 |
| TAC | GTA | 0 | 9.34635e-08 | 1.95127e-07 | 9.21798e-08 | 0 | 9.56246e-08 | 1.64434e-07 | 9.5661e-08 | 0.997535 | 4.28721e-05 | 0.00224792 | 0.000173724 | 1146904 | 3869 |
| TAG | CTA | 0 | 9.48036e-08 | 2.19785e-07 | 9.41045e-08 | 0 | 9.60353e-08 | 1.79974e-07 | 9.47551e-08 | 0.997393 | 4.30994e-05 | 0.00235713 | 0.000205656 | 1098607 | 3995 |
| TAT | ATA | 0 | 1.07453e-07 | 1.24627e-07 | 7.36162e-08 | 0 | 7.59051e-08 | 1.32947e-07 | 7.3435e-08 | 0.996774 | 6.56701e-05 | 0.0029209 | 0.000238938 | 1425083 | 5413 |
| TCA | TGA | 5.00192e-08 | 0 | 5.05531e-08 | 5.98193e-07 | 5.72238e-08 | 0 | 4.86844e-08 | 4.62197e-07 | 0.998332 | 1.69784e-05 | 0.00158282 | 6.69579e-05 | 2192278 | 5050 |
| TCC | GGA | 4.79411e-08 | 0 | 5.55006e-08 | 7.72688e-08 | 5.10453e-08 | 0 | 5.91622e-08 | 7.83887e-08 | 0.998495 | 1.92821e-05 | 0.00144767 | 3.78211e-05 | 2359283 | 4889 |
| TCG | CGA | 1.83536e-07 | 0 | 1.94197e-07 | 3.75087e-06 | 1.93731e-07 | 0 | 1.93207e-07 | 3.20689e-07 | 0.993339 | 0.000219569 | 0.00599321 | 0.000443282 | 575458 | 3603 |
| TCT | AGA | 4.45312e-08 | 0 | 4.61849e-08 | 6.08769e-08 | 5.94834e-08 | 0 | 4.54011e-08 | 6.33164e-08 | 0.998392 | 2.2827e-05 | 0.00151799 | 6.70778e-05 | 2503380 | 5262 |
| TGA | TCA | 4.62197e-07 | 4.86844e-08 | 0 | 5.72238e-08 | 5.98193e-07 | 5.05531e-08 | 0 | 5.00192e-08 | 0.998332 | 1.69784e-05 | 0.00158282 | 6.69579e-05 | 2192278 | 5050 |
| TGC | GCA | 1.1382e-07 | 5.67507e-08 | 0 | 5.87141e-08 | 1.24118e-06 | 5.2786e-08 | 0 | 3.01061e-07 | 0.997888 | 1.80144e-05 | 0.002015 | 7.67675e-05 | 2121916 | 6169 |
| TGG | CCA | 1.01094e-07 | 4.70823e-08 | 0 | 1.17436e-07 | 1.04868e-06 | 3.94375e-08 | 0 | 4.4122e-08 | 0.998323 | 1.41809e-05 | 0.00161044 | 5.07136e-05 | 2702988 | 6586 |
| TGT | ACA | 8.09303e-08 | 5.09725e-08 | 0 | 5.71304e-08 | 1.29628e-07 | 5.19353e-08 | 0 | 5.49587e-08 | 0.997548 | 4.05182e-05 | 0.00224595 | 0.000164909 | 2130319 | 6302 |
| TTA | TAA | 7.75846e-08 | 1.25006e-07 | 6.81514e-08 | 0 | 9.6021e-08 | 5.72003e-07 | 6.81448e-08 | 0 | 0.997609 | 3.02605e-05 | 0.00223388 | 0.00012628 | 1569596 | 5228 |
| TTC | GAA | 4.6776e-08 | 1.65514e-07 | 4.64379e-08 | 0 | 4.5292e-08 | 8.58886e-07 | 4.73418e-08 | 0 | 0.997829 | 1.44483e-05 | 0.00204339 | 0.000111802 | 2287638 | 7431 |
| TTG | CAA | 5.37207e-08 | 1.20174e-07 | 5.73e-08 | 0 | 5.39959e-08 | 1.1786e-07 | 6.04681e-08 | 0 | 0.997583 | 3.02443e-05 | 0.00219294 | 0.000193735 | 1917864 | 6433 |
| TTT | AAA | 3.37447e-08 | 1.20242e-07 | 7.06832e-07 | 0 | 5.14508e-08 | 3.58069e-07 | 5.69173e-08 | 0 | 0.998013 | 1.74132e-05 | 0.00191397 | 5.41054e-05 | 3070230 | 9004 |
66 rows